Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Forward (+)

51203676 .. 51204272

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG442900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCAGTTCAAGCAAGTCTACTTTGCGTTGTTTGGTTCTTATCTTGAGCATGACATCGAAGTTCAAGCTTCTGGGGATCACAAGAACCTGCTGCTAAGTTACGTGGCCACGCCTAGATATGAAGGTCTTGACTTTGACAGGTTCATGGTGGACAAAGATGCGAAGGCTTTGTACAAAGCAGGGGAGAGGAAATTGGGGACGGATGAGAAGAAGTTCATTGAGATTTTCAGTGGGAGGAGCAGTGCGCATTTGAATGCTGTGAGTGCTGCTTATCAGAACATGTATGGGAGTTCTTTAAAGAAGGCGGTGAAGAAGGAGACGTCGGGGCTTTTCGAGCATGGGCTGGTGACGATTCTGCAGTGTGCTGAGCATCCTGGGAGGTATTTCGCTAAGGTTTTGCATAAGGCGATGAAGGGTTTAGGGACAGATGATAGTACACTTCTGAGGGTGATTGTTTCGAGGGCGGAGATTGATTTGCAGTATATAAAGGCTGAGTATCAAAAGAAGTATGGAAAGAGTTTGGGTGATGCTGTTCGTTCTGAGACTTCTGGGAATTACAGGGATTTTCTTCTGGCTCTTATAGGCCCCAGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

198

Amino Acids

22.23

Weight (kDa)

8.95

Isoelectric Point (pI)

21.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	53 - 118	5.8e-21	Annexin
Annexin	PF00191	128 - 193	9.1e-26	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	323
Acc16I	TGCGCA	1 cut(s)	246
Acc36I	ACCTGC	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	2 cut(s)	305, 464
AclWI	GGATC	1 cut(s)	84
AcoI	YGGCCR	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	320
AfaI	GTAC	2 cut(s)	173, 436
AflIII	ACRYGT	1 cut(s)	279
AgsI	TTSAA	3 cut(s)	10, 65, 253
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	2 cut(s)	311, 536
AlwI	GGATC	1 cut(s)	84
AoxI	GGCC	2 cut(s)	105, 583
ApeKI	GCWGC	2 cut(s)	91, 266
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	247
AspS9I	GGNCC	1 cut(s)	584
AsuHPI	GGTGA	4 cut(s)	319, 358, 460, 536
BalI	TGGCCA	1 cut(s)	107
BarI	GAAGNNNNNNTAC	2 cut(s)	155, 187
BbvI	GCAGC	2 cut(s)	78, 253
BciT130I	CCWGG	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	311, 536
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	96
BisI	GCNGC	2 cut(s)	92, 267
BlpI	GCTNAGC	1 cut(s)	366
BlsI	GCNGC	2 cut(s)	93, 268
Bme1390I	CCNGG	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	1 cut(s)	375
BmrI	ACTGGG	1 cut(s)	582
BmsI	GCATC	3 cut(s)	148, 379, 517
BmuI	ACTGGG	1 cut(s)	582
Bpu10I	CCTNAGC	1 cut(s)	390
Bpu1102I	GCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	103
BsaHI	GRCGYC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	374
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bse1I	ACTGG	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	374
BseGI	GGATG	2 cut(s)	208, 370
BseMII	CTCAG	4 cut(s)	357, 434, 483, 531
BseNI	ACTGG	1 cut(s)	588
BseRI	GAGGAG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	78, 253
BshFI	GGCC	2 cut(s)	107, 585
BslFI	GGGAC	2 cut(s)	211, 436
BsmAI	GTCTC	2 cut(s)	311, 536
BsmBI	CGTCTC	1 cut(s)	311
BsmFI	GGGAC	2 cut(s)	211, 436
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	107, 585
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	76
Bsp1720I	GCTNAGC	1 cut(s)	366
BspACI	CCGC	2 cut(s)	305, 464
BspANI	GGCC	2 cut(s)	107, 585
BspCNI	CTCAG	4 cut(s)	358, 435, 484, 532
BspLI	GGNNCC	1 cut(s)	586
BspMAI	CTGCAG	1 cut(s)	360
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	588
BssECI	CCNNGG	1 cut(s)	374
BssMI	GATC	1 cut(s)	76
BssNI	GRCGYC	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	375
BstACI	GRCGYC	1 cut(s)	320
BstAUI	TGTACA	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	103
BstDEI	CTNAG	6 cut(s)	95, 366, 390, 443, 492, 540
BstF5I	GGATG	2 cut(s)	208, 370
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	2 cut(s)	311, 536
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 263, 334
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	356
BstV1I	GCAGC	2 cut(s)	78, 253
BsuRI	GGCC	2 cut(s)	107, 585
BtgZI	GCGATG	1 cut(s)	422
BtsCI	GGATG	2 cut(s)	208, 370
BtsI	GCAGTG	2 cut(s)	247, 365
BtsIMutI	CAGTG	3 cut(s)	235, 247, 365
BveI	ACCTGC	1 cut(s)	96
CfoI	GCGC	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	584
Csp6I	GTAC	2 cut(s)	172, 435
CviAII	CATG	4 cut(s)	50, 145, 280, 338
CviJI	RGCY	8 cut(s)	68, 107, 167, 328, 343, 491, 575, 585
CviKI_1	RGCY	8 cut(s)	68, 107, 167, 328, 343, 491, 575, 585
CviQI	GTAC	2 cut(s)	172, 435
DdeI	CTNAG	6 cut(s)	95, 366, 390, 443, 492, 540
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
DraI	TTTAAA	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	4 cut(s)	53, 148, 283, 341
FaqI	GGGAC	2 cut(s)	211, 436
FatI	CATG	4 cut(s)	49, 144, 279, 337
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	92, 267
FokI	GGATG	2 cut(s)	215, 357
Fsp4HI	GCNGC	2 cut(s)	92, 267
FspAI	RTGCGCAY	1 cut(s)	246
FspBI	CTAG	1 cut(s)	114
FspI	TGCGCA	1 cut(s)	246
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	2 cut(s)	92, 267
HaeIII	GGCC	2 cut(s)	107, 585
HhaI	GCGC	1 cut(s)	247
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	4 cut(s)	53, 148, 283, 341
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	1 cut(s)	352
HphI	GGTGA	4 cut(s)	319, 358, 460, 536
Hpy166II	GTNNAC	3 cut(s)	19, 151, 437
Hpy188I	TCNGA	3 cut(s)	276, 444, 541
Hpy188III	TCNNGA	2 cut(s)	44, 128
Hpy8I	GTNNAC	3 cut(s)	19, 151, 437
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	5 cut(s)	116, 157, 295, 307, 406
HpyCH4IV	ACGT	2 cut(s)	102, 320
HpyCH4V	TGCA	4 cut(s)	4, 358, 400, 478
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 263, 334
HpyF3I	CTNAG	6 cut(s)	95, 366, 390, 443, 492, 540
HpySE526I	ACGT	2 cut(s)	102, 320
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	4 cut(s)	53, 148, 283, 341
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	237
Lsp1109I	GCAGC	2 cut(s)	78, 253
LweI	GCATC	3 cut(s)	148, 379, 517
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	2 cut(s)	102, 320
MaeIII	GTNAC	2 cut(s)	98, 346
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	3 cut(s)	220, 322, 560
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	2 cut(s)	191, 553
MluNI	TGGCCA	1 cut(s)	107
MnlI	CCTC	5 cut(s)	180, 228, 372, 438, 453
Mox20I	TGGCCA	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	1 cut(s)	296
MslI	CAYNNNNRTG	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	3 cut(s)	10, 263, 334
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	4 cut(s)	53, 148, 283, 341
NlaIV	GGNNCC	1 cut(s)	586
NmuCI	GTSAC	1 cut(s)	346
NsbI	TGCGCA	1 cut(s)	246
NspI	RCATGY	1 cut(s)	283
PciI	ACATGT	1 cut(s)	279
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	2 cut(s)	93, 268
Ppu21I	YACGTR	1 cut(s)	103
PscI	ACATGT	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	586
PspPI	GGNCC	1 cut(s)	584
PstI	CTGCAG	1 cut(s)	360
RsaI	GTAC	2 cut(s)	173, 436
RsaNI	GTAC	2 cut(s)	172, 435
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	2 cut(s)	92, 267
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	584
ScrFI	CCNGG	1 cut(s)	375
SetI	ASST	8 cut(s)	70, 90, 105, 127, 143, 323, 383, 396
SfaNI	GCATC	3 cut(s)	148, 379, 517
SfcI	CTRYAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	2 cut(s)	191, 553
SsiI	CCGC	2 cut(s)	305, 464
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	373
TaiI	ACGT	2 cut(s)	105, 323
TaqI	TCGA	3 cut(s)	57, 333, 458
TasI	AATT	2 cut(s)	191, 553
TatI	WGTACW	2 cut(s)	171, 434
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	3 cut(s)	235, 247, 365
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	2 cut(s)	91, 266
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	4 cut(s)	133, 135, 205, 425
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	3 cut(s)	235, 247, 365
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	1 cut(s)	114
ZraI	GACGTC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.