Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Reverse (-)

32838520 .. 32839323

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g33390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTACCACGAAGATCTCGCCAAGCGCCTCTCCTCCGAGCTCAGCGGCAACACCAAGAAGTCCGTCCTCCTCTGGATGCAAGTGATGGGAGAGTTCGATCCCCCAACCCGCGACGCCACCATCATCCGCCAGGCTCTGGCCGGAGGCGGCATCGTGGACCTCAGAGCCGCCACCGAAGTCATCTGCTCCAGAACCCCATCTCAGATCCTCCACTTCAAGAACATCTACTTCTCCGCCTTCGGGGTTTACCTCGAGCAAGACATCGAGCTTCACACCTCCGGGGACCACAAAAAGCTCCTCCTCGCTTATGTGGCGACGCCGCGGTACGAGGGTTTGGAGATCGACAGGGCGGCGGCGGAGCATGACGCTAAAGCTCTCTTCCGCGCCGGGGAGAAGAGACTGGGAACTGATGAGAAGGTGTTTGTGCAGATATTCAGCGGGCGGAGCAGCGCCCACTTGGCCACGGTGAGCGCCGCCTACCACAACATGTACGGTAGCTCGCTGAAGAAGGCGGTGAAGAAGGAGACATCTGGGAACTTTGAGCACGCACTTCTGACTATCTTGCAGTGCGCGGAGCATCCCGGGAGGTACTTTGCGAAGGTTTTGCACCGGGCGATGAAGGGTCTGGGGACAGACGACAGTACTCTCCTGAGGGTGATCGTTTCGAGGGCCGAAATCGATATGCAGTTTATAAAGGCGGAGTATTTGAAGAAGTACGGGAAGACGTTGAATGATGCGGTTCATTCGGAGACTTCTGGGCATTACAGGGCGTTTCTGCTGGCGCTTTTAGGCCCCAATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

268

Amino Acids

29.71

Weight (kDa)

8.89

Isoelectric Point (pI)

29.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	37 - 102	1.1e-09	Annexin
Annexin	PF00191	121 - 187	3.7e-20	Annexin
Annexin	PF00191	197 - 262	2.7e-23	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	692
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccII	CGCG	4 cut(s)	111, 322, 384, 572
AclWI	GGATC	2 cut(s)	92, 199
AcoI	YGGCCR	2 cut(s)	138, 459
AcuI	CTGAAG	1 cut(s)	524
AcyI	GRCGYC	2 cut(s)	114, 317
AfaI	GTAC	6 cut(s)	5, 326, 491, 590, 643, 716
AfiI	CCNNNNNNNGG	3 cut(s)	136, 240, 388
AflIII	ACRYGT	1 cut(s)	486
AgsI	TTSAA	3 cut(s)	217, 709, 730
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	5 cut(s)	40, 268, 295, 374, 498
AluI	AGCT	5 cut(s)	40, 268, 295, 374, 498
Alw21I	GWGCWC	2 cut(s)	42, 546
Alw26I	GTCTC	3 cut(s)	391, 518, 743
AlwI	GGATC	2 cut(s)	92, 199
AlwNI	CAGNNNCTG	1 cut(s)	136
Ama87I	CYCGRG	2 cut(s)	251, 581
AoxI	GGCC	4 cut(s)	138, 459, 669, 790
ApeKI	GCWGC	1 cut(s)	447
AspLEI	GCGC	6 cut(s)	27, 386, 452, 473, 572, 784
AspS9I	GGNCC	4 cut(s)	157, 283, 669, 791
AsuC2I	CCSGG	5 cut(s)	280, 388, 582, 583, 611
AsuHPI	GGTGA	3 cut(s)	478, 526, 667
AvaI	CYCGRG	2 cut(s)	251, 581
AvaII	GGWCC	2 cut(s)	157, 283
AxyI	CCTNAGG	1 cut(s)	650
BaeI	ACNNNNGTAYC	2 cut(s)	316, 349
BalI	TGGCCA	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	728
Bbv12I	GWGCWC	2 cut(s)	42, 546
BbvI	GCAGC	1 cut(s)	459
BccI	CCATC	3 cut(s)	79, 128, 205
BcgI	CGANNNNNNTGC	2 cut(s)	586, 620
BciT130I	CCWGG	1 cut(s)	131
BcnI	CCSGG	5 cut(s)	280, 388, 582, 583, 611
BcoDI	GTCTC	3 cut(s)	391, 518, 743
BfoI	RGCGCY	4 cut(s)	28, 453, 474, 785
BglI	GCCNNNNNGGC	1 cut(s)	458
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	8 cut(s)	46, 148, 168, 320, 351, 354, 448, 474
BlpI	GCTNAGC	1 cut(s)	41
BlsI	GCNGC	8 cut(s)	47, 149, 169, 321, 352, 355, 449, 475
BmcAI	AGTACT	1 cut(s)	643
Bme1390I	CCNGG	6 cut(s)	131, 280, 388, 582, 583, 611
Bme18I	GGWCC	2 cut(s)	157, 283
BmeT110I	CYCGRG	2 cut(s)	251, 581
BmgT120I	GGNCC	4 cut(s)	157, 283, 669, 791
BmiI	GGNNCC	2 cut(s)	284, 793
BmrFI	CCNGG	6 cut(s)	131, 280, 388, 582, 583, 611
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	4 cut(s)	66, 159, 586, 724
BmuI	ACTGGG	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	728
BpmI	CTGGAG	1 cut(s)	172
Bpu1102I	GCTNAGC	1 cut(s)	41
BpuMI	CCSGG	5 cut(s)	280, 388, 582, 583, 611
Bsa29I	ATCGAT	1 cut(s)	678
BsaHI	GRCGYC	2 cut(s)	114, 317
BsaJI	CCNNGG	5 cut(s)	279, 320, 387, 462, 581
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 240, 388
Bse1I	ACTGG	1 cut(s)	405
Bse21I	CCTNAGG	1 cut(s)	650
BseBI	CCWGG	1 cut(s)	131
BseCI	ATCGAT	1 cut(s)	678
BseDI	CCNNGG	5 cut(s)	279, 320, 387, 462, 581
BseGI	GGATG	3 cut(s)	81, 123, 577
BseLI	CCNNNNNNNGG	3 cut(s)	136, 240, 388
BseMII	CTCAG	4 cut(s)	55, 175, 215, 641
BseNI	ACTGG	1 cut(s)	405
BseRI	GAGGAG	4 cut(s)	22, 59, 287, 290
BseXI	GCAGC	1 cut(s)	459
BsgI	GTGCAG	1 cut(s)	446
Bsh1236I	CGCG	4 cut(s)	111, 322, 384, 572
BshFI	GGCC	4 cut(s)	140, 461, 671, 792
BshVI	ATCGAT	1 cut(s)	678
BsiHKAI	GWGCWC	2 cut(s)	42, 546
BsiHKCI	CYCGRG	2 cut(s)	251, 581
BsiSI	CCGG	5 cut(s)	141, 279, 387, 582, 610
BslFI	GGGAC	2 cut(s)	296, 643
BslI	CCNNNNNNNGG	3 cut(s)	136, 240, 388
BsmAI	GTCTC	3 cut(s)	391, 518, 743
BsmFI	GGGAC	2 cut(s)	296, 643
BsnI	GGCC	4 cut(s)	140, 461, 671, 792
BsoBI	CYCGRG	2 cut(s)	251, 581
Bsp1286I	GDGCHC	2 cut(s)	42, 546
Bsp143I	GATC	5 cut(s)	13, 97, 204, 339, 657
Bsp1720I	GCTNAGC	1 cut(s)	41
BspANI	GGCC	4 cut(s)	140, 461, 671, 792
BspCNI	CTCAG	4 cut(s)	54, 174, 214, 642
BspDI	ATCGAT	1 cut(s)	678
BspFNI	CGCG	4 cut(s)	111, 322, 384, 572
BspLI	GGNNCC	2 cut(s)	284, 793
BspPI	GGATC	2 cut(s)	92, 199
BsrI	ACTGG	1 cut(s)	405
BssECI	CCNNGG	5 cut(s)	279, 320, 387, 462, 581
BssMI	GATC	5 cut(s)	13, 97, 204, 339, 657
BssNI	GRCGYC	2 cut(s)	114, 317
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	3 cut(s)	466, 494, 641
Bst6I	CTCTTC	2 cut(s)	383, 389
BstACI	GRCGYC	2 cut(s)	114, 317
BstC8I	GCNNGC	4 cut(s)	440, 500, 546, 780
BstDEI	CTNAG	4 cut(s)	41, 161, 201, 650
BstDSI	CCRYGG	2 cut(s)	320, 462
BstF5I	GGATG	3 cut(s)	81, 123, 577
BstFNI	CGCG	4 cut(s)	111, 322, 384, 572
BstH2I	RGCGCY	4 cut(s)	28, 453, 474, 785
BstHHI	GCGC	6 cut(s)	27, 386, 452, 473, 572, 784
BstKTI	GATC	5 cut(s)	16, 100, 207, 342, 660
BstMAI	GTCTC	3 cut(s)	391, 518, 743
BstMBI	GATC	5 cut(s)	13, 97, 204, 339, 657
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 444, 458
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	490
BstSCI	CCNGG	6 cut(s)	129, 278, 386, 580, 581, 609
BstUI	CGCG	4 cut(s)	111, 322, 384, 572
BstV1I	GCAGC	1 cut(s)	459
BstV2I	GAAGAC	1 cut(s)	728
BstX2I	RGATCY	2 cut(s)	13, 204
BstYI	RGATCY	2 cut(s)	13, 204
Bsu15I	ATCGAT	1 cut(s)	678
Bsu36I	CCTNAGG	1 cut(s)	650
BsuRI	GGCC	4 cut(s)	140, 461, 671, 792
BsuTUI	ATCGAT	1 cut(s)	678
BtgI	CCRYGG	2 cut(s)	320, 462
BtgZI	GCGATG	1 cut(s)	629
BtsCI	GGATG	3 cut(s)	81, 123, 577
BtsI	GCAGTG	1 cut(s)	572
BtsIMutI	CAGTG	1 cut(s)	572
Cac8I	GCNNGC	4 cut(s)	440, 500, 546, 780
CaiI	CAGNNNCTG	1 cut(s)	136
CfoI	GCGC	6 cut(s)	27, 386, 452, 473, 572, 784
Cfr13I	GGNCC	4 cut(s)	157, 283, 669, 791
Cfr42I	CCGCGG	1 cut(s)	323
Cfr9I	CCCGGG	1 cut(s)	581
ClaI	ATCGAT	1 cut(s)	678
CseI	GACGC	3 cut(s)	122, 325, 374
Csp6I	GTAC	6 cut(s)	4, 325, 490, 589, 642, 715
CviAII	CATG	2 cut(s)	362, 487
CviQI	GTAC	6 cut(s)	4, 325, 490, 589, 642, 715
DdeI	CTNAG	4 cut(s)	41, 161, 201, 650
DpnI	GATC	5 cut(s)	15, 99, 206, 341, 659
DpnII	GATC	5 cut(s)	13, 97, 204, 339, 657
EaeI	YGGCCR	2 cut(s)	138, 459
Eam1104I	CTCTTC	2 cut(s)	383, 389
EarI	CTCTTC	2 cut(s)	383, 389
EciI	GGCGGA	5 cut(s)	116, 223, 371, 457, 713
Ecl136II	GAGCTC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	2 cut(s)	157, 283
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	524
Eco81I	CCTNAGG	1 cut(s)	650
Eco88I	CYCGRG	2 cut(s)	251, 581
EcoICRI	GAGCTC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	791
EcoRII	CCWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	2 cut(s)	365, 490
FaiI	YATR	5 cut(s)	309, 363, 488, 683, 692
FaqI	GGGAC	2 cut(s)	296, 643
FatI	CATG	2 cut(s)	361, 486
FauI	CCCGC	2 cut(s)	116, 431
Fnu4HI	GCNGC	8 cut(s)	46, 148, 168, 320, 351, 354, 448, 474
FokI	GGATG	3 cut(s)	88, 110, 564
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	8 cut(s)	46, 148, 168, 320, 351, 354, 448, 474
GlaI	GCGC	6 cut(s)	26, 385, 451, 472, 571, 783
GluI	GCNGC	8 cut(s)	46, 148, 168, 320, 351, 354, 448, 474
GsuI	CTGGAG	1 cut(s)	172
HaeII	RGCGCY	4 cut(s)	28, 453, 474, 785
HaeIII	GGCC	4 cut(s)	140, 461, 671, 792
HapII	CCGG	5 cut(s)	141, 279, 387, 582, 610
HgaI	GACGC	3 cut(s)	122, 325, 374
HhaI	GCGC	6 cut(s)	27, 386, 452, 473, 572, 784
Hin1I	GRCGYC	2 cut(s)	114, 317
Hin1II	CATG	2 cut(s)	365, 490
Hin6I	GCGC	6 cut(s)	25, 384, 450, 471, 570, 782
HinP1I	GCGC	6 cut(s)	25, 384, 450, 471, 570, 782
HpaII	CCGG	5 cut(s)	141, 279, 387, 582, 610
HphI	GGTGA	3 cut(s)	478, 526, 667
Hpy166II	GTNNAC	2 cut(s)	157, 247
Hpy188I	TCNGA	5 cut(s)	37, 164, 204, 555, 748
Hpy188III	TCNNGA	4 cut(s)	73, 189, 217, 649
Hpy8I	GTNNAC	2 cut(s)	157, 247
Hpy99I	CGWCG	2 cut(s)	116, 319
HpyAV	CCTTC	6 cut(s)	247, 409, 502, 514, 592, 613
HpyCH4III	ACNGT	3 cut(s)	466, 494, 641
HpyCH4IV	ACGT	1 cut(s)	725
HpyCH4V	TGCA	5 cut(s)	79, 427, 565, 607, 685
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 444, 458
HpyF3I	CTNAG	4 cut(s)	41, 161, 201, 650
HpySE526I	ACGT	1 cut(s)	725
Hsp92I	GRCGYC	2 cut(s)	114, 317
Hsp92II	CATG	2 cut(s)	365, 490
HspAI	GCGC	6 cut(s)	25, 384, 450, 471, 570, 782
KspI	CCGCGG	1 cut(s)	323
Kzo9I	GATC	5 cut(s)	13, 97, 204, 339, 657
LmnI	GCTCC	5 cut(s)	191, 300, 358, 444, 574
Lsp1109I	GCAGC	1 cut(s)	459
LweI	GCATC	4 cut(s)	66, 159, 586, 724
MaeII	ACGT	1 cut(s)	725
MalI	GATC	5 cut(s)	15, 99, 206, 341, 659
MboI	GATC	5 cut(s)	13, 97, 204, 339, 657
MboII	GAAGA	7 cut(s)	23, 370, 406, 517, 529, 721, 733
MflI	RGATCY	2 cut(s)	13, 204
MhlI	GDGCHC	2 cut(s)	42, 546
MlsI	TGGCCA	1 cut(s)	461
MluNI	TGGCCA	1 cut(s)	461
Mox20I	TGGCCA	1 cut(s)	461
MscI	TGGCCA	1 cut(s)	461
Msp20I	TGGCCA	1 cut(s)	461
MspA1I	CMGCKG	3 cut(s)	45, 322, 438
MspI	CCGG	5 cut(s)	141, 279, 387, 582, 610
MspR9I	CCNGG	6 cut(s)	131, 280, 388, 582, 583, 611
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	4 cut(s)	111, 322, 384, 572
MwoI	GCNNNNNNNGC	3 cut(s)	311, 444, 458
NciI	CCSGG	5 cut(s)	280, 388, 582, 583, 611
NdeII	GATC	5 cut(s)	13, 97, 204, 339, 657
NlaIII	CATG	2 cut(s)	365, 490
NlaIV	GGNNCC	2 cut(s)	284, 793
NspI	RCATGY	1 cut(s)	490
PaeR7I	CTCGAG	1 cut(s)	251
PciI	ACATGT	1 cut(s)	486
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	8 cut(s)	47, 149, 169, 321, 352, 355, 449, 475
PscI	ACATGT	1 cut(s)	486
PsiI	TTATAA	1 cut(s)	692
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	284, 793
PspPI	GGNCC	4 cut(s)	157, 283, 669, 791
PspXI	VCTCGAGB	1 cut(s)	251
PstNI	CAGNNNCTG	1 cut(s)	136
PsuI	RGATCY	2 cut(s)	13, 204
RsaI	GTAC	6 cut(s)	5, 326, 491, 590, 643, 716
RsaNI	GTAC	6 cut(s)	4, 325, 490, 589, 642, 715
SacI	GAGCTC	1 cut(s)	42
SacII	CCGCGG	1 cut(s)	323
SatI	GCNGC	8 cut(s)	46, 148, 168, 320, 351, 354, 448, 474
Sau3AI	GATC	5 cut(s)	13, 97, 204, 339, 657
Sau96I	GGNCC	4 cut(s)	157, 283, 669, 791
ScaI	AGTACT	1 cut(s)	643
ScrFI	CCNGG	6 cut(s)	131, 280, 388, 582, 583, 611
SduI	GDGCHC	2 cut(s)	42, 546
SfaNI	GCATC	4 cut(s)	66, 159, 586, 724
Sfr274I	CTCGAG	1 cut(s)	251
Sfr303I	CCGCGG	1 cut(s)	323
SgrBI	CCGCGG	1 cut(s)	323
SinI	GGWCC	2 cut(s)	157, 283
SlaI	CTCGAG	1 cut(s)	251
SmaI	CCCGGG	1 cut(s)	583
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	6 cut(s)	129, 278, 386, 580, 581, 609
TaaI	ACNGT	3 cut(s)	466, 494, 641
TaiI	ACGT	1 cut(s)	728
TaqI	TCGA	6 cut(s)	96, 252, 264, 342, 665, 678
TatI	WGTACW	1 cut(s)	641
TauI	GCSGC	7 cut(s)	48, 150, 170, 322, 353, 356, 476
TscAI	CASTG	1 cut(s)	572
TseI	GCWGC	1 cut(s)	447
TspDTI	ATGAA	2 cut(s)	632, 731
TspGWI	ACGGA	1 cut(s)	52
TspMI	CCCGGG	1 cut(s)	581
TspRI	CASTG	1 cut(s)	572
Van91I	CCANNNNNTGG	1 cut(s)	136
VpaK11BI	GGWCC	2 cut(s)	157, 283
XceI	RCATGY	1 cut(s)	490
XhoI	CTCGAG	1 cut(s)	251
XmaI	CCCGGG	1 cut(s)	581
ZrmI	AGTACT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.