Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Reverse (-)

55265619 .. 55267575

Gene Structure 1957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG329300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCATCTGTGATCATCCCACCGGTGCCACCTTCGCTGCGTGATGATGCTGCTCATCTCTACGAGGCCTTTAAAGGATTTGGATGTGATACTGCAGCAGTAGTCAATATCCTTGCTCACAGGAATATTGCAACACAGCGTGATGCCATCCAAAAAAAATACAACCCCATGCACTCCGAAGATCTCAACAAGCGCTTGTCCTCCGAACTTAGTGTACATGTCAAGAAAGCAATATTGTTGTGGATGCCTGATCCAGCAACGCGTGATGCAAACATAGTGAGGCACGCATTGGATCGTGGTGTTGATCTCAAAGCGGCCAGTGAAGTCATATGCTCTCGTACTCCGTCCCAGCTGCGACAATTCAAGCAAATCTACTTTTCAAATTTCAGTGTTGGCCTCGAGGATGACATTGCATCTAAAGCCTCAGGAGATCACAAAAAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

148

Amino Acids

16.36

Weight (kDa)

8.93

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 80	9e-13	Annexin
Annexin	PF00191	88 - 147	1.3e-09	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	25
AccII	CGCG	1 cut(s)	262
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	2 cut(s)	245, 300
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	382
AdeI	CACNNNGTG	1 cut(s)	140
AfaI	GTAC	2 cut(s)	216, 340
AfeI	AGCGCT	1 cut(s)	194
AflIII	ACRYGT	2 cut(s)	217, 260
AgeI	ACCGGT	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	364, 381
AluBI	AGCT	1 cut(s)	352
AluI	AGCT	1 cut(s)	352
AlwI	GGATC	2 cut(s)	245, 300
Ama87I	CYCGRG	1 cut(s)	398
Aor51HI	AGCGCT	1 cut(s)	194
AoxI	GGCC	3 cut(s)	66, 315, 394
ApeKI	GCWGC	4 cut(s)	37, 50, 95, 352
ApoI	RAATTY	1 cut(s)	382
AsiGI	ACCGGT	1 cut(s)	22
AspLEI	GCGC	1 cut(s)	195
AvaI	CYCGRG	1 cut(s)	398
AxyI	CCTNAGG	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	25
BbvI	GCAGC	4 cut(s)	24, 37, 107, 339
BccI	CCATC	1 cut(s)	155
BclI	TGATCA	1 cut(s)	12
BfaI	CTAG	1 cut(s)	445
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	196
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	5 cut(s)	38, 51, 96, 315, 353
BlsI	GCNGC	5 cut(s)	39, 52, 97, 316, 354
BmeT110I	CYCGRG	1 cut(s)	398
BmiI	GGNNCC	1 cut(s)	27
BmsI	GCATC	6 cut(s)	14, 37, 133, 234, 256, 422
BsaWI	WCCGGW	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	318
Bse21I	CCTNAGG	1 cut(s)	424
Bse3DI	GCAATG	1 cut(s)	408
BseGI	GGATG	5 cut(s)	15, 89, 147, 249, 409
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	4 cut(s)	24, 37, 107, 339
BseYI	CCCAGC	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	262
BshFI	GGCC	3 cut(s)	68, 317, 396
BshNI	GGYRCC	1 cut(s)	25
BshTI	ACCGGT	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	3 cut(s)	68, 317, 396
BsoBI	CYCGRG	1 cut(s)	398
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	6 cut(s)	12, 181, 250, 292, 304, 430
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	3 cut(s)	68, 317, 396
BspCNI	CTCAG	1 cut(s)	437
BspFNI	CGCG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	2 cut(s)	245, 300
BspT107I	GGYRCC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	408
BsrFI	RCCGGY	1 cut(s)	22
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	318
BssAI	RCCGGY	1 cut(s)	22
BssMI	GATC	6 cut(s)	12, 181, 250, 292, 304, 430
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	209, 424
BstF5I	GGATG	5 cut(s)	15, 89, 147, 249, 409
BstFNI	CGCG	1 cut(s)	262
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	6 cut(s)	15, 184, 253, 295, 307, 433
BstMBI	GATC	6 cut(s)	12, 181, 250, 292, 304, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 419
BstNSI	RCATGY	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	262
BstV1I	GCAGC	4 cut(s)	24, 37, 107, 339
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
Bsu36I	CCTNAGG	1 cut(s)	424
BsuRI	GGCC	3 cut(s)	68, 317, 396
BtsCI	GGATG	5 cut(s)	15, 89, 147, 249, 409
BtsIMutI	CAGTG	2 cut(s)	325, 394
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	215, 339
CspAI	ACCGGT	1 cut(s)	22
CviAII	CATG	2 cut(s)	169, 218
CviJI	RGCY	6 cut(s)	68, 317, 352, 396, 422, 444
CviKI_1	RGCY	6 cut(s)	68, 317, 352, 396, 422, 444
CviQI	GTAC	2 cut(s)	215, 339
DdeI	CTNAG	2 cut(s)	209, 424
DpnI	GATC	6 cut(s)	14, 183, 252, 294, 306, 432
DpnII	GATC	6 cut(s)	12, 181, 250, 292, 304, 430
DraI	TTTAAA	1 cut(s)	73
DraIII	CACNNNGTG	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	68
Eco47III	AGCGCT	1 cut(s)	194
Eco81I	CCTNAGG	1 cut(s)	424
Eco88I	CYCGRG	1 cut(s)	398
FaeI	CATG	2 cut(s)	172, 221
FaiI	YATR	5 cut(s)	170, 219, 275, 329, 331
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	2 cut(s)	168, 217
FauNDI	CATATG	1 cut(s)	329
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	38, 51, 96, 315, 353
FokI	GGATG	5 cut(s)	2, 96, 134, 256, 416
Fsp4HI	GCNGC	5 cut(s)	38, 51, 96, 315, 353
FspBI	CTAG	1 cut(s)	445
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	5 cut(s)	38, 51, 96, 315, 353
GsaI	CCCAGC	1 cut(s)	352
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	3 cut(s)	68, 317, 396
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	172, 221
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HpaII	CCGG	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	2 cut(s)	178, 205
Hpy188III	TCNNGA	2 cut(s)	223, 426
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	42
HpyCH4V	TGCA	5 cut(s)	95, 131, 172, 269, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 419
HpyF3I	CTNAG	2 cut(s)	209, 424
Hsp92II	CATG	2 cut(s)	172, 221
HspAI	GCGC	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	6 cut(s)	12, 181, 250, 292, 304, 430
LpnPI	CCDG	7 cut(s)	36, 106, 261, 267, 331, 362, 411
Lsp1109I	GCAGC	4 cut(s)	24, 37, 107, 339
LweI	GCATC	6 cut(s)	14, 37, 133, 234, 256, 422
MaeI	CTAG	1 cut(s)	445
MalI	GATC	6 cut(s)	14, 183, 252, 294, 306, 432
MboI	GATC	6 cut(s)	12, 181, 250, 292, 304, 430
MboII	GAAGA	1 cut(s)	191
MflI	RGATCY	1 cut(s)	181
MluCI	AATT	2 cut(s)	359, 382
MluI	ACGCGT	1 cut(s)	260
MnlI	CCTC	6 cut(s)	58, 211, 273, 394, 407, 433
MseI	TTAA	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	34, 419
NdeI	CATATG	1 cut(s)	329
NdeII	GATC	6 cut(s)	12, 181, 250, 292, 304, 430
NlaIII	CATG	2 cut(s)	172, 221
NlaIV	GGNNCC	1 cut(s)	27
NspI	RCATGY	1 cut(s)	221
PaeR7I	CTCGAG	1 cut(s)	398
PceI	AGGCCT	1 cut(s)	68
PciI	ACATGT	1 cut(s)	217
PinAI	ACCGGT	1 cut(s)	22
PkrI	GCNGC	5 cut(s)	39, 52, 97, 316, 354
PscI	ACATGT	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	27
PspXI	VCTCGAGB	1 cut(s)	398
PsrI	GAACNNNNNNTAC	2 cut(s)	198, 230
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	2 cut(s)	216, 340
RsaNI	GTAC	2 cut(s)	215, 339
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	5 cut(s)	38, 51, 96, 315, 353
Sau3AI	GATC	6 cut(s)	12, 181, 250, 292, 304, 430
SetI	ASST	2 cut(s)	34, 354
SfaNI	GCATC	6 cut(s)	14, 37, 133, 234, 256, 422
SfcI	CTRYAG	1 cut(s)	93
Sfr274I	CTCGAG	1 cut(s)	398
SgrAI	CRCCGGYG	1 cut(s)	22
SlaI	CTCGAG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	2 cut(s)	359, 382
SseBI	AGGCCT	1 cut(s)	68
SsiI	CCGC	1 cut(s)	314
SspI	AATATT	2 cut(s)	127, 234
SspMI	CTAG	1 cut(s)	445
StuI	AGGCCT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	399
TasI	AATT	2 cut(s)	359, 382
TatI	WGTACW	1 cut(s)	214
TauI	GCSGC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	2 cut(s)	325, 394
TseI	GCWGC	4 cut(s)	37, 50, 95, 352
TspGWI	ACGGA	1 cut(s)	333
TspRI	CASTG	2 cut(s)	325, 394
XapI	RAATTY	1 cut(s)	382
XceI	RCATGY	1 cut(s)	221
XhoI	CTCGAG	1 cut(s)	398
XspI	CTAG	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.