Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Reverse (-)

60586733 .. 60587763

Gene Structure 1031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G039360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCGACTTTAACCACACCCCAAGCCCCGACCACACCCCGCACCGACGCCATCGACCTCCGCAAAGCCTTCAAGGGCTTCGGCTGCGACACCGCCGCCGTCATCAACATCCTCGCCCACCGCGACGCCGCCCACCGCGCCCAAATCGCCCGCGAGTACAGTACCATGTACTCCGAGGACTTCACCAAGCGCCTCTCCTCCGAGCTCAGCGGAAATACCAAGAAAGCCCTCCTCCTCTGGATCCCCGACCCCGCCACCCGCGACGCCACCATCGTCCGTCACGCCCTCACCGGCTCCGACCACCGCGCCGCCACCGAGGTCATCTGCTCCCGAACCCCCTCCCAGATCGCCCTATTCAAGCAAGTCTACTCCTCGATTTTCAATACCCATCTAGAACGCGACATCGGACTGTACACCTCCGGCGACCTCAAGAATCTCCTGCTGGGCTTCGTCACCACTCAGAGGTACGAGGGCTTCGAATTCGACAGGGTAGCGGCGGAGAACGACGCGAAATCCCTGTTCATGGCCGGAGAGAAAAGACTAGGGACTGATGAGAAGAAATTTATCGAAGTTTTTAGTAATCGAAGCCGGGCTCATCTGAATGCGGTGAGCTCGGCTTATGAGAGCATGTACGGAAATTCTCTGAGAAAAGCGGTGAAGAAGGAGACTTCCGGGAACTTCGAGCATGGACTGGTGACGATTCTGGAGTGTGCTGATCATCCAGGGAGGTACTTTGCTAGGGTACTGCATAAAGCCATGAAGGGTTTGGGGACGGATGATAGTACATTGTTGAGAGTGGTGGTGACGAGGGCGGAGATTGATATGATGTATGTGAAGATTGAGTACCAGAAGAAGTATGGTAAGAGTTTGAACGAGGCCGTAAAGTCTGAGACTTCTGGGAATTTCAGGGCTTTTCTTCTGGCTCTGTTAGGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

312

Amino Acids

34.79

Weight (kDa)

9.18

Isoelectric Point (pI)

27.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	3.4e-17	Annexin
Annexin	PF00191	88 - 148	2.9e-09	Annexin
Annexin	PF00191	169 - 234	2e-20	Annexin
Annexin	PF00191	244 - 309	2.2e-24	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	366
AccII	CGCG	7 cut(s)	123, 138, 153, 261, 306, 399, 509
AclWI	GGATC	2 cut(s)	235, 248
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	4 cut(s)	479, 560, 637, 901
AcyI	GRCGYC	3 cut(s)	48, 126, 264
AfiI	CCNNNNNNNGG	2 cut(s)	462, 523
AgsI	TTSAA	4 cut(s)	73, 358, 382, 871
AjnI	CCWGG	1 cut(s)	721
AluBI	AGCT	2 cut(s)	205, 612
AluI	AGCT	2 cut(s)	205, 612
Alw21I	GWGCWC	2 cut(s)	207, 614
Alw26I	GTCTC	2 cut(s)	659, 884
AlwI	GGATC	2 cut(s)	235, 248
AoxI	GGCC	2 cut(s)	525, 876
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	4 cut(s)	479, 560, 637, 901
AspLEI	GCGC	3 cut(s)	140, 192, 308
AsuC2I	CCSGG	2 cut(s)	590, 673
AsuHPI	GGTGA	7 cut(s)	175, 280, 445, 619, 667, 706, 814
AsuII	TTCGAA	1 cut(s)	477
BamHI	GGATCC	1 cut(s)	240
BanII	GRGCYC	3 cut(s)	207, 595, 614
BarI	GAAGNNNNNNTAC	4 cut(s)	458, 490, 827, 859
Bbv12I	GWGCWC	2 cut(s)	207, 614
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	3 cut(s)	59, 278, 396
BceAI	ACGGC	2 cut(s)	83, 863
BciT130I	CCWGG	1 cut(s)	723
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	2 cut(s)	590, 673
BcoDI	GTCTC	2 cut(s)	659, 884
BfaI	CTAG	3 cut(s)	392, 542, 738
BfoI	RGCGCY	1 cut(s)	193
BisI	GCNGC	5 cut(s)	85, 96, 129, 309, 495
BlpI	GCTNAGC	1 cut(s)	206
BlsI	GCNGC	5 cut(s)	86, 97, 130, 310, 496
Bme1390I	CCNGG	3 cut(s)	590, 673, 723
BmiI	GGNNCC	2 cut(s)	242, 295
BmrFI	CCNGG	3 cut(s)	590, 673, 723
BpmI	CTGGAG	1 cut(s)	725
Bpu1102I	GCTNAGC	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	2 cut(s)	590, 673
BsaHI	GRCGYC	3 cut(s)	48, 126, 264
BsaJI	CCNNGG	3 cut(s)	174, 315, 722
Bsc4I	CCNNNNNNNGG	2 cut(s)	462, 523
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	723
BseDI	CCNNGG	3 cut(s)	174, 315, 722
BseGI	GGATG	3 cut(s)	108, 718, 781
BseLI	CCNNNNNNNGG	2 cut(s)	462, 523
BseMII	CTCAG	4 cut(s)	220, 473, 635, 879
BseNI	ACTGG	1 cut(s)	696
BseRI	GAGGAG	4 cut(s)	187, 221, 224, 361
BseXI	GCAGC	1 cut(s)	71
BseYI	CCCAGC	1 cut(s)	442
Bsh1236I	CGCG	7 cut(s)	123, 138, 153, 261, 306, 399, 509
BshFI	GGCC	2 cut(s)	527, 878
BsiHKAI	GWGCWC	2 cut(s)	207, 614
BsiSI	CCGG	5 cut(s)	291, 420, 528, 589, 672
BslFI	GGGAC	2 cut(s)	559, 784
BslI	CCNNNNNNNGG	2 cut(s)	462, 523
BsmAI	GTCTC	2 cut(s)	659, 884
BsmFI	GGGAC	2 cut(s)	559, 784
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	2 cut(s)	527, 878
Bsp119I	TTCGAA	1 cut(s)	477
Bsp1286I	GDGCHC	3 cut(s)	207, 595, 614
Bsp1407I	TGTACA	1 cut(s)	411
Bsp143I	GATC	3 cut(s)	240, 345, 715
Bsp1720I	GCTNAGC	1 cut(s)	206
BspANI	GGCC	2 cut(s)	527, 878
BspCNI	CTCAG	4 cut(s)	219, 472, 636, 880
BspFNI	CGCG	7 cut(s)	123, 138, 153, 261, 306, 399, 509
BspLI	GGNNCC	2 cut(s)	242, 295
BspPI	GGATC	2 cut(s)	235, 248
BspT104I	TTCGAA	1 cut(s)	477
BsrFI	RCCGGY	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	411
BsrI	ACTGG	1 cut(s)	696
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	3 cut(s)	174, 315, 722
BssMI	GATC	3 cut(s)	240, 345, 715
BssNI	GRCGYC	3 cut(s)	48, 126, 264
Bst2UI	CCWGG	1 cut(s)	723
Bst4CI	ACNGT	2 cut(s)	161, 411
BstACI	GRCGYC	3 cut(s)	48, 126, 264
BstAUI	TGTACA	1 cut(s)	411
BstBI	TTCGAA	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	4 cut(s)	206, 459, 644, 888
BstF5I	GGATG	3 cut(s)	108, 718, 781
BstFNI	CGCG	7 cut(s)	123, 138, 153, 261, 306, 399, 509
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	3 cut(s)	140, 192, 308
BstKTI	GATC	3 cut(s)	243, 348, 718
BstMAI	GTCTC	2 cut(s)	659, 884
BstMBI	GATC	3 cut(s)	240, 345, 715
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 137, 146
BstNI	CCWGG	1 cut(s)	723
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	3 cut(s)	588, 671, 721
BstUI	CGCG	7 cut(s)	123, 138, 153, 261, 306, 399, 509
BstV1I	GCAGC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	527, 878
BtsCI	GGATG	3 cut(s)	108, 718, 781
Cac8I	GCNNGC	1 cut(s)	151
CfoI	GCGC	3 cut(s)	140, 192, 308
Cfr10I	RCCGGY	1 cut(s)	290
CseI	GACGC	4 cut(s)	56, 134, 272, 515
CviAII	CATG	5 cut(s)	166, 523, 628, 686, 757
DdeI	CTNAG	4 cut(s)	206, 459, 644, 888
DpnI	GATC	3 cut(s)	242, 347, 717
DpnII	GATC	3 cut(s)	240, 345, 715
EaeI	YGGCCR	1 cut(s)	525
EciI	GGCGGA	2 cut(s)	512, 827
Ecl136II	GAGCTC	2 cut(s)	205, 612
Eco24I	GRGCYC	3 cut(s)	207, 595, 614
Eco53kI	GAGCTC	2 cut(s)	205, 612
EcoICRI	GAGCTC	2 cut(s)	205, 612
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	721
EcoT38I	GRGCYC	3 cut(s)	207, 595, 614
FaeI	CATG	5 cut(s)	169, 526, 631, 689, 760
FaqI	GGGAC	2 cut(s)	559, 784
FatI	CATG	5 cut(s)	165, 522, 627, 685, 756
FauI	CCCGC	4 cut(s)	47, 158, 259, 266
FbaI	TGATCA	1 cut(s)	715
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	5 cut(s)	85, 96, 129, 309, 495
FokI	GGATG	3 cut(s)	95, 705, 788
FriOI	GRGCYC	3 cut(s)	207, 595, 614
Fsp4HI	GCNGC	5 cut(s)	85, 96, 129, 309, 495
FspBI	CTAG	3 cut(s)	392, 542, 738
GlaI	GCGC	3 cut(s)	139, 191, 307
GluI	GCNGC	5 cut(s)	85, 96, 129, 309, 495
GsaI	CCCAGC	1 cut(s)	446
GsuI	CTGGAG	1 cut(s)	725
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	527, 878
HapII	CCGG	5 cut(s)	291, 420, 528, 589, 672
HgaI	GACGC	4 cut(s)	56, 134, 272, 515
HhaI	GCGC	3 cut(s)	140, 192, 308
Hin1I	GRCGYC	3 cut(s)	48, 126, 264
Hin1II	CATG	5 cut(s)	169, 526, 631, 689, 760
Hin6I	GCGC	3 cut(s)	138, 190, 306
HinP1I	GCGC	3 cut(s)	138, 190, 306
HinfI	GANTC	2 cut(s)	433, 700
HpaII	CCGG	5 cut(s)	291, 420, 528, 589, 672
HphI	GGTGA	7 cut(s)	175, 280, 445, 619, 667, 706, 814
Hpy166II	GTNNAC	2 cut(s)	367, 414
Hpy188I	TCNGA	8 cut(s)	175, 202, 298, 407, 462, 600, 645, 889
Hpy188III	TCNNGA	5 cut(s)	238, 330, 392, 430, 704
Hpy8I	GTNNAC	2 cut(s)	367, 414
Hpy99I	CGWCG	4 cut(s)	50, 128, 266, 509
HpyAV	CCTTC	3 cut(s)	79, 655, 754
HpyCH4III	ACNGT	2 cut(s)	161, 411
HpyCH4V	TGCA	1 cut(s)	748
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 137, 146
HpyF3I	CTNAG	4 cut(s)	206, 459, 644, 888
Hsp92I	GRCGYC	3 cut(s)	48, 126, 264
Hsp92II	CATG	5 cut(s)	169, 526, 631, 689, 760
HspAI	GCGC	3 cut(s)	138, 190, 306
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	3 cut(s)	240, 345, 715
LmnI	GCTCC	2 cut(s)	299, 332
Lsp1109I	GCAGC	1 cut(s)	71
MaeI	CTAG	3 cut(s)	392, 542, 738
MaeIII	GTNAC	4 cut(s)	278, 451, 694, 802
MalI	GATC	3 cut(s)	242, 347, 717
MboI	GATC	3 cut(s)	240, 345, 715
MboII	GAAGA	5 cut(s)	568, 670, 847, 862, 908
MflI	RGATCY	1 cut(s)	240
MhlI	GDGCHC	3 cut(s)	207, 595, 614
MluCI	AATT	4 cut(s)	479, 560, 637, 901
MmeI	TCCRAC	1 cut(s)	321
MseI	TTAA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	5 cut(s)	291, 420, 528, 589, 672
MspR9I	CCNGG	3 cut(s)	590, 673, 723
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	1 cut(s)	723
MvnI	CGCG	7 cut(s)	123, 138, 153, 261, 306, 399, 509
MwoI	GCNNNNNNNGC	3 cut(s)	84, 137, 146
NciI	CCSGG	2 cut(s)	590, 673
NdeII	GATC	3 cut(s)	240, 345, 715
NlaIII	CATG	5 cut(s)	169, 526, 631, 689, 760
NlaIV	GGNNCC	2 cut(s)	242, 295
NmeAIII	GCCGAG	1 cut(s)	593
NmuCI	GTSAC	4 cut(s)	278, 451, 694, 802
NspI	RCATGY	1 cut(s)	631
NspV	TTCGAA	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 270, 474
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	433, 700
PfoI	TCCNGGA	1 cut(s)	671
PkrI	GCNGC	5 cut(s)	86, 97, 130, 310, 496
Psp124BI	GAGCTC	2 cut(s)	207, 614
Psp6I	CCWGG	1 cut(s)	721
PspFI	CCCAGC	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	721
PspN4I	GGNNCC	2 cut(s)	242, 295
PsuI	RGATCY	1 cut(s)	240
RseI	CAYNNNNRTG	1 cut(s)	600
SacI	GAGCTC	2 cut(s)	207, 614
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	5 cut(s)	85, 96, 129, 309, 495
Sau3AI	GATC	3 cut(s)	240, 345, 715
ScrFI	CCNGG	3 cut(s)	590, 673, 723
SduI	GDGCHC	3 cut(s)	207, 595, 614
SetI	ASST	9 cut(s)	60, 207, 321, 419, 429, 467, 614, 731, 934
SfuI	TTCGAA	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	4 cut(s)	479, 560, 637, 901
SspMI	CTAG	3 cut(s)	392, 542, 738
SstI	GAGCTC	2 cut(s)	207, 614
StyD4I	CCNGG	3 cut(s)	588, 671, 721
TaaI	ACNGT	2 cut(s)	161, 411
TaqI	TCGA	7 cut(s)	54, 374, 477, 483, 567, 583, 681
TasI	AATT	4 cut(s)	479, 560, 637, 901
TatI	WGTACW	4 cut(s)	156, 168, 411, 782
TauI	GCSGC	4 cut(s)	98, 131, 311, 497
TfiI	GAWTC	2 cut(s)	433, 700
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TseFI	GTSAC	4 cut(s)	278, 451, 694, 802
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	4 cut(s)	278, 451, 694, 802
TspDTI	ATGAA	2 cut(s)	511, 773
TspGWI	ACGGA	3 cut(s)	266, 648, 788
XapI	RAATTY	4 cut(s)	479, 560, 637, 901
XbaI	TCTAGA	1 cut(s)	391
XceI	RCATGY	1 cut(s)	631
XcmI	CCANNNNNNNNNTGG	2 cut(s)	763, 854
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	3 cut(s)	392, 542, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.