Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Forward (+)

1043868 .. 1046872

Gene Structure 3005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1013400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCATCTGTGATTGTACCACCGATGCCACCTTCGCCCCGTGATGATGCTCTCCACCTTTACCGTGCCTTCAAAGGATTTGGGTGCGACACAGCGGCAGTAATCAACATTCTAGCGCACAGGAATGGAATGCAGCGCGCTGCCATCGAAAAGGAATACAAGGCCACCTACTCTGAAGACCTAAACAAGCGCTTGTCCTCAGAGCTTAGTGGACATCTCAAGAAAGCAGTTTTAATGTGGATGCCGGATCTGGCAATGCGTGATGCCAACGTAGTACACCATGCTTTGGAGGGAGATGTTGATCTTAAAGGTGCCACTGAAGTGATTTGTTCTCGTATTCCCTCCCAGATGCGACAATTCAAACAAATTTATTTCTCAAGCTTTGGTGTTGATCTTGAAACTGACCTTGCTAAGAAAATATCCTCCGGATATCACAGAAAGTTGCTGGTAGCATATGTTAAGGTACCGCGGTACGAAGGTCCTGAATATGATCAAGGGATAGTAAAGTCGGATGCTGAAGCGCTGTATAAGGCCGGAGAGAAGAAATTGGGAACTGATGAGAAGGTTTTCATACAAATATTTAGCGAAAGAAGCAGGGCACATTTGGTTGCTATTTGCTCTGCTTACCAAAGTATGTATGGTCATTCATTGGAAAAGGCAGTAAAAAAGGAAACATCTGGGTCGTTTTCTCATGCACTTCTGACTATTTTGCGATGTGCTGACCATCCTGGCAAGTATTTCGCAAGGGTTTTACGGAAAGCAATGAAGGGTTTGGGAACAGATGATCCCACACTGATAAGGGTAATTGTGACAAGGGCCGAGTTTGATATGCAGTACATAAAGTCAGAATATCGGAACAAATATGGAAAGTCATTGCATGATGCAGTTCATTCAGATACCTCCGGAAATTACAGGACCTTTCTTCTTTCTCTGTTAGGCAACAATCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

317

Amino Acids

35.46

Weight (kDa)

9.18

Isoelectric Point (pI)

26.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 80	2.9e-18	Annexin
Annexin	PF00191	87 - 151	1.2e-07	Annexin
Annexin	PF00191	171 - 236	8e-23	Annexin
Annexin	PF00191	246 - 311	2.3e-23	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	463
AccB1I	GGYRCC	2 cut(s)	311, 463
AccB7I	CCANNNNNTGG	1 cut(s)	286
AccII	CGCG	2 cut(s)	138, 469
AccIII	TCCGGA	2 cut(s)	425, 902
AciI	CCGC	3 cut(s)	95, 467, 469
AclWI	GGATC	2 cut(s)	255, 779
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	3 cut(s)	195, 339, 537
AfaI	GTAC	5 cut(s)	18, 276, 465, 473, 836
AfeI	AGCGCT	2 cut(s)	191, 522
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	3 cut(s)	73, 361, 398
AjnI	CCWGG	1 cut(s)	727
AleI	CACNNNNGTG	1 cut(s)	320
AloI	GAACNNNNNNTCC	2 cut(s)	769, 801
AluBI	AGCT	2 cut(s)	205, 381
AluI	AGCT	2 cut(s)	205, 381
AlwI	GGATC	2 cut(s)	255, 779
Aor13HI	TCCGGA	2 cut(s)	425, 902
Aor51HI	AGCGCT	2 cut(s)	191, 522
AoxI	GGCC	3 cut(s)	162, 531, 816
ApeKI	GCWGC	2 cut(s)	133, 140
ApoI	RAATTY	1 cut(s)	366
Asp700I	GAANNNNTTC	1 cut(s)	566
Asp718I	GGTACC	1 cut(s)	463
AspLEI	GCGC	5 cut(s)	118, 138, 140, 192, 523
AspS9I	GGNCC	3 cut(s)	479, 816, 915
AvaII	GGWCC	2 cut(s)	479, 915
BaeGI	GKGCMC	1 cut(s)	601
BaeI	ACNNNNGTAYC	4 cut(s)	455, 463, 488, 496
BanI	GGYRCC	2 cut(s)	311, 463
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	127, 145
BccI	CCATC	2 cut(s)	152, 732
BcgI	CGANNNNNNTGC	2 cut(s)	721, 755
BciT130I	CCWGG	1 cut(s)	729
BclI	TGATCA	1 cut(s)	490
BfaI	CTAG	1 cut(s)	113
BfoI	RGCGCY	2 cut(s)	193, 524
BisI	GCNGC	3 cut(s)	96, 134, 141
BlsI	GCNGC	3 cut(s)	97, 135, 142
Bme1390I	CCNGG	1 cut(s)	729
Bme18I	GGWCC	2 cut(s)	479, 915
BmgT120I	GGNCC	3 cut(s)	479, 816, 915
BmiI	GGNNCC	2 cut(s)	313, 465
BmrFI	CCNGG	1 cut(s)	729
BmsI	GCATC	8 cut(s)	14, 15, 37, 231, 253, 339, 502, 871
BpiI	GAAGAC	1 cut(s)	183
BpuEI	CTTGAG	2 cut(s)	203, 361
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	467
BsaWI	WCCGGW	2 cut(s)	425, 902
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse3DI	GCAATG	3 cut(s)	261, 768, 872
Bse8I	GATNNNNATC	1 cut(s)	300
BseAI	TCCGGA	2 cut(s)	425, 902
BseBI	CCWGG	1 cut(s)	729
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	3 cut(s)	246, 517, 724
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMI	GCAATG	3 cut(s)	261, 768, 872
BseMII	CTCAG	1 cut(s)	213
BsePI	GCGCGC	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	601
BseXI	GCAGC	2 cut(s)	127, 145
Bsh1236I	CGCG	2 cut(s)	138, 469
BshFI	GGCC	3 cut(s)	164, 533, 818
BshNI	GGYRCC	2 cut(s)	311, 463
BsiSI	CCGG	4 cut(s)	245, 426, 534, 903
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	135
BsnI	GGCC	3 cut(s)	164, 533, 818
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp13I	TCCGGA	2 cut(s)	425, 902
Bsp143I	GATC	5 cut(s)	247, 301, 391, 490, 784
BspACI	CCGC	3 cut(s)	95, 467, 469
BspANI	GGCC	3 cut(s)	164, 533, 818
BspCNI	CTCAG	1 cut(s)	212
BspEI	TCCGGA	2 cut(s)	425, 902
BspFNI	CGCG	2 cut(s)	138, 469
BspLI	GGNNCC	2 cut(s)	313, 465
BspPI	GGATC	2 cut(s)	255, 779
BspT107I	GGYRCC	2 cut(s)	311, 463
BsrDI	GCAATG	3 cut(s)	261, 768, 872
BssECI	CCNNGG	1 cut(s)	467
BssHII	GCGCGC	1 cut(s)	136
BssMI	GATC	5 cut(s)	247, 301, 391, 490, 784
Bst2UI	CCWGG	1 cut(s)	729
Bst4CI	ACNGT	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	4 cut(s)	199, 206, 411, 948
BstDSI	CCRYGG	1 cut(s)	467
BstF5I	GGATG	3 cut(s)	246, 517, 724
BstFNI	CGCG	2 cut(s)	138, 469
BstH2I	RGCGCY	2 cut(s)	193, 524
BstHHI	GCGC	5 cut(s)	118, 138, 140, 192, 523
BstKTI	GATC	5 cut(s)	250, 304, 394, 493, 787
BstMBI	GATC	5 cut(s)	247, 301, 391, 490, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 591
BstNI	CCWGG	1 cut(s)	729
BstSCI	CCNGG	1 cut(s)	727
BstSLI	GKGCMC	1 cut(s)	601
BstUI	CGCG	2 cut(s)	138, 469
BstV1I	GCAGC	2 cut(s)	127, 145
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	3 cut(s)	164, 533, 818
BtgI	CCRYGG	1 cut(s)	467
BtgZI	GCGATG	1 cut(s)	727
BtsCI	GGATG	3 cut(s)	246, 517, 724
BtsIMutI	CAGTG	2 cut(s)	315, 791
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	5 cut(s)	118, 138, 140, 192, 523
Cfr13I	GGNCC	3 cut(s)	479, 816, 915
Cfr42I	CCGCGG	1 cut(s)	470
Csp6I	GTAC	5 cut(s)	17, 275, 464, 472, 835
CviAII	CATG	3 cut(s)	281, 692, 878
CviJI	RGCY	5 cut(s)	164, 205, 381, 533, 818
CviKI_1	RGCY	5 cut(s)	164, 205, 381, 533, 818
CviQI	GTAC	5 cut(s)	17, 275, 464, 472, 835
DdeI	CTNAG	4 cut(s)	199, 206, 411, 948
DpnI	GATC	5 cut(s)	249, 303, 393, 492, 786
DpnII	GATC	5 cut(s)	247, 301, 391, 490, 784
Eco32I	GATATC	1 cut(s)	431
Eco47I	GGWCC	2 cut(s)	479, 915
Eco47III	AGCGCT	2 cut(s)	191, 522
Eco57I	CTGAAG	3 cut(s)	195, 339, 537
EcoO109I	RGGNCCY	2 cut(s)	479, 915
EcoRII	CCWGG	1 cut(s)	727
EcoRV	GATATC	1 cut(s)	431
FaeI	CATG	3 cut(s)	284, 695, 881
FatI	CATG	3 cut(s)	280, 691, 877
FauNDI	CATATG	1 cut(s)	454
FbaI	TGATCA	1 cut(s)	490
Fnu4HI	GCNGC	3 cut(s)	96, 134, 141
FokI	GGATG	3 cut(s)	253, 524, 711
Fsp4HI	GCNGC	3 cut(s)	96, 134, 141
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	5 cut(s)	117, 137, 139, 191, 522
GluI	GCNGC	3 cut(s)	96, 134, 141
HaeII	RGCGCY	2 cut(s)	193, 524
HaeIII	GGCC	3 cut(s)	164, 533, 818
HapII	CCGG	4 cut(s)	245, 426, 534, 903
HhaI	GCGC	5 cut(s)	118, 138, 140, 192, 523
Hin1II	CATG	3 cut(s)	284, 695, 881
Hin6I	GCGC	5 cut(s)	116, 136, 138, 190, 521
HinP1I	GCGC	5 cut(s)	116, 136, 138, 190, 521
HindIII	AAGCTT	1 cut(s)	379
HpaII	CCGG	4 cut(s)	245, 426, 534, 903
Hpy166II	GTNNAC	2 cut(s)	212, 277
Hpy188I	TCNGA	7 cut(s)	175, 202, 511, 702, 847, 855, 895
Hpy188III	TCNNGA	5 cut(s)	220, 395, 426, 482, 903
Hpy8I	GTNNAC	2 cut(s)	212, 277
HpyAV	CCTTC	5 cut(s)	42, 79, 470, 556, 760
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	5 cut(s)	133, 695, 832, 877, 884
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 591
HpyF3I	CTNAG	4 cut(s)	199, 206, 411, 948
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	284, 695, 881
HspAI	GCGC	5 cut(s)	116, 136, 138, 190, 521
Kpn2I	TCCGGA	2 cut(s)	425, 902
KpnI	GGTACC	1 cut(s)	467
Ksp22I	TGATCA	1 cut(s)	490
KspI	CCGCGG	1 cut(s)	470
Kzo9I	GATC	5 cut(s)	247, 301, 391, 490, 784
Lsp1109I	GCAGC	2 cut(s)	127, 145
LweI	GCATC	8 cut(s)	14, 15, 37, 231, 253, 339, 502, 871
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	808
MalI	GATC	5 cut(s)	249, 303, 393, 492, 786
MboI	GATC	5 cut(s)	247, 301, 391, 490, 784
MboII	GAAGA	3 cut(s)	188, 553, 914
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	601
MluCI	AATT	5 cut(s)	356, 366, 545, 804, 907
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	5 cut(s)	208, 283, 352, 433, 910
MroI	TCCGGA	2 cut(s)	425, 902
MroXI	GAANNNNTTC	1 cut(s)	566
MseI	TTAA	3 cut(s)	233, 306, 459
MslI	CAYNNNNRTG	2 cut(s)	123, 320
MspA1I	CMGCKG	2 cut(s)	95, 469
MspI	CCGG	4 cut(s)	245, 426, 534, 903
MspR9I	CCNGG	1 cut(s)	729
Mva1269I	GAATGC	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	729
MvnI	CGCG	2 cut(s)	138, 469
MwoI	GCNNNNNNNGC	2 cut(s)	34, 591
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	5 cut(s)	247, 301, 391, 490, 784
NlaIII	CATG	3 cut(s)	284, 695, 881
NlaIV	GGNNCC	2 cut(s)	313, 465
NmeAIII	GCCGAG	1 cut(s)	844
NmuCI	GTSAC	1 cut(s)	808
OliI	CACNNNNGTG	1 cut(s)	320
PauI	GCGCGC	1 cut(s)	136
PctI	GAATGC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	566
PflMI	CCANNNNNTGG	1 cut(s)	286
PkrI	GCNGC	3 cut(s)	97, 135, 142
PpuMI	RGGWCCY	2 cut(s)	479, 915
Psp5II	RGGWCCY	2 cut(s)	479, 915
Psp6I	CCWGG	1 cut(s)	727
PspGI	CCWGG	1 cut(s)	727
PspN4I	GGNNCC	2 cut(s)	313, 465
PspPI	GGNCC	3 cut(s)	479, 816, 915
PspPPI	RGGWCCY	2 cut(s)	479, 915
PsuI	RGATCY	1 cut(s)	247
PteI	GCGCGC	1 cut(s)	136
RsaI	GTAC	5 cut(s)	18, 276, 465, 473, 836
RsaNI	GTAC	5 cut(s)	17, 275, 464, 472, 835
RseI	CAYNNNNRTG	2 cut(s)	123, 320
SacII	CCGCGG	1 cut(s)	470
SaqAI	TTAA	3 cut(s)	233, 306, 459
SatI	GCNGC	3 cut(s)	96, 134, 141
Sau3AI	GATC	5 cut(s)	247, 301, 391, 490, 784
Sau96I	GGNCC	3 cut(s)	479, 816, 915
ScrFI	CCNGG	1 cut(s)	729
SduI	GDGCHC	1 cut(s)	601
SfaNI	GCATC	8 cut(s)	14, 15, 37, 231, 253, 339, 502, 871
Sfr303I	CCGCGG	1 cut(s)	470
SgrBI	CCGCGG	1 cut(s)	470
SinI	GGWCC	2 cut(s)	479, 915
SmiMI	CAYNNNNRTG	2 cut(s)	123, 320
SmlI	CTYRAG	2 cut(s)	218, 376
SmoI	CTYRAG	2 cut(s)	218, 376
Sse9I	AATT	5 cut(s)	356, 366, 545, 804, 907
SsiI	CCGC	3 cut(s)	95, 467, 469
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	727
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	147
TasI	AATT	5 cut(s)	356, 366, 545, 804, 907
TatI	WGTACW	2 cut(s)	274, 834
TauI	GCSGC	1 cut(s)	98
Tru1I	TTAA	3 cut(s)	233, 306, 459
Tru9I	TTAA	3 cut(s)	233, 306, 459
TscAI	CASTG	2 cut(s)	322, 798
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	2 cut(s)	133, 140
Tsp45I	GTSAC	1 cut(s)	808
TspDTI	ATGAA	4 cut(s)	559, 636, 779, 878
TspGWI	ACGGA	1 cut(s)	769
TspRI	CASTG	2 cut(s)	322, 798
Van91I	CCANNNNNTGG	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	479, 915
XapI	RAATTY	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	635
XmnI	GAANNNNTTC	1 cut(s)	566
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.