AT1G68410

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002720
Physical Location & Seq
Reverse (-)
25649624 .. 25653019
3396 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68410.4

Sequence Viewer

Length: 1311 bp
ATGGCGTCTAGAGAAGGAAAGAGACGTAATCATAATCATGATGATGAGAAGCTTGTGCCTCTTGCTGCTTTGATAAGTAGAGAGACGAAAGCTGCTAAAATGGAGAAACCGATTGTGAGATTTGGACAAGCTGCTCAATCTAGGAAAGGAGAAGATTATGTCTTGATCAAGACTGATAGTCTTCGTGTTCCTTCCAATTCTTCAACTGCTTTCTCTGTTTTTGCGGTATTTGATGGGCATAATGGAAAAGCGGCAGCGGTTTATACAAGGGAGAATCTGTTGAACCATGTTATTAGTGCTCTTCCTAGTGGGCTTAGCCGTGACGAGTGGCTTCACGCTTTACCTCGTGCATTAGTTTCTGGATTTGTGAAGACTGATAAGGAGTTTCAGAGCAGAGGGGAAACTTCTGGAACAACAGCAACGTTTGTGATAGTAGATGGATGGACTGTGACCGTTGCATGTGTTGGCGACTCGCGCTGCATCTTGGATACTAAGGGTGGTTCAGTTTCTAACCTTACTGTTGATCACAGGCTTGAAGATAATACAGAAGAGAGGGAACGCGTTACTGCGAGTGGTGGAGAAGTTGGCAGGCTAAGCATTGTTGGAGGCGTTGAGATTGGTCCACTACGGTGTTGGCCTGGAGGTCTCTGCCTTTCAAGGTCTATTGGGGATATGGATGTTGGGGAGTTCATTGTTCCAGTTCCCTTTGTAAAGCAAGTGAAGCTATCAAACCTTGGAGGAAGGCTTATCATTGCATCAGATGGCATATGGGATGCTCTCTCCTCAGAAGTCGCAGCTAAAACTTGCCGTGGGTTATCTGCTGAACTTGCTGCTAGACAAGTAGTTAAGGAAGCATTGAGAAGAAGGGGACTTAAGGATGACACAACTTGCATTGTGGTCGACATAATCCCACCCGAAAACTTCCAAGAACCACCGCCTTCACCTCCTAAGAAGCACAACAACTTCTTTAAATCATTACTCTTCAGAAAGAAATCAAACTCATCTAACAAACTCTCCAAGAAACTTTCCACTGTTGGTATTGTTGAAGAGCTCTTCGAAGAAGGTTCGGCAATGCTCGCTGAAAGGTTAGGATCAGGTGACTGTTCTAAGGAATCAACAACAGGAGGAGGGATATTCACGTGTGCCATATGCCAACTAGACCTAGCTCCAAGCGAGGGAATATCAGTCCACGCAGGTTCAATCTTCTCGACAAGTCTAAAACCGTGGCAAGGACCGTTCTTATGCACAGATTGTCGTGACAAAAAAGACGCGATGGAAGGGAAACGTCCAAGTGGAGTTAAAGTCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

436

Amino Acids

47.04

Weight (kDa)

8.56

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 66 - 288 1.6e-37 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1184
AccI GTMKAC 1 cut(s) 900
AccII CGCG 3 cut(s) 475, 561, 1271
AciI CCGC 4 cut(s) 224, 251, 257, 935
AclI AACGTT 1 cut(s) 422
AclWI GGATC 1 cut(s) 1099
AcuI CTGAAG 1 cut(s) 967
AcvI CACGTG 1 cut(s) 1140
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 1175, 1229
AflII CTTAAG 1 cut(s) 872
AflIII ACRYGT 2 cut(s) 559, 1139
AgsI TTSAA 6 cut(s) 204, 283, 536, 657, 1046, 1200
AhdI GACNNNNNGTC 1 cut(s) 177
AjnI CCWGG 1 cut(s) 637
AleI CACNNNNGTG 1 cut(s) 628
AluBI AGCT 7 cut(s) 52, 92, 131, 724, 797, 1051, 1166
AluI AGCT 7 cut(s) 52, 92, 131, 724, 797, 1051, 1166
Alw21I GWGCWC 2 cut(s) 301, 1053
Alw26I GTCTC 3 cut(s) 16, 77, 650
AlwI GGATC 1 cut(s) 1099
AoxI GGCC 1 cut(s) 635
ApeKI GCWGC 7 cut(s) 65, 92, 131, 254, 477, 794, 830
AspLEI GCGC 1 cut(s) 477
AspS9I GGNCC 2 cut(s) 620, 1232
AsuHPI GGTGA 2 cut(s) 933, 1109
AsuII TTCGAA 1 cut(s) 1056
AvaII GGWCC 2 cut(s) 620, 1232
BanII GRGCYC 1 cut(s) 1053
BauI CACGAG 1 cut(s) 345
BbrPI CACGTG 1 cut(s) 1140
BbsI GAAGAC 2 cut(s) 173, 377
Bbv12I GWGCWC 2 cut(s) 301, 1053
BbvI GCAGC 7 cut(s) 52, 79, 118, 266, 464, 806, 817
BccI CCATC 5 cut(s) 227, 431, 435, 755, 1267
BceAI ACGGC 2 cut(s) 303, 792
BcgI CGANNNNNNTGC 2 cut(s) 880, 914
BciT130I CCWGG 1 cut(s) 639
BciVI GTATCC 1 cut(s) 481
BclI TGATCA 2 cut(s) 165, 523
BcoDI GTCTC 3 cut(s) 16, 77, 650
BfaI CTAG 7 cut(s) 9, 141, 306, 834, 1157, 1163, 1309
BfrI CTTAAG 1 cut(s) 872
BfuAI ACCTGC 1 cut(s) 1184
BfuI GTATCC 1 cut(s) 481
BisI GCNGC 8 cut(s) 66, 93, 132, 252, 255, 478, 795, 831
BlpI GCTNAGC 2 cut(s) 314, 593
BlsI GCNGC 8 cut(s) 67, 94, 133, 253, 256, 479, 796, 832
Bme1390I CCNGG 1 cut(s) 639
Bme18I GGWCC 2 cut(s) 620, 1232
BmeRI GACNNNNNGTC 1 cut(s) 177
BmgT120I GGNCC 2 cut(s) 620, 1232
BmrFI CCNGG 1 cut(s) 639
BmsI GCATC 3 cut(s) 489, 763, 764
BpiI GAAGAC 2 cut(s) 173, 377
BpmI CTGGAG 1 cut(s) 660
Bpu1102I GCTNAGC 2 cut(s) 314, 593
Bpu14I TTCGAA 1 cut(s) 1056
BsaAI YACGTR 1 cut(s) 1140
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 650
BsaJI CCNNGG 3 cut(s) 733, 808, 1223
BsaXI ACNNNNNCTCC 5 cut(s) 263, 293, 998, 1028, 1287
Bsc4I CCNNNNNNNGG 2 cut(s) 1175, 1229
Bse1I ACTGG 1 cut(s) 698
Bse3DI GCAATG 2 cut(s) 750, 1077
BseBI CCWGG 1 cut(s) 639
BseDI CCNNGG 3 cut(s) 733, 808, 1223
BseGI GGATG 4 cut(s) 446, 682, 778, 883
BseLI CCNNNNNNNGG 2 cut(s) 1175, 1229
BseMI GCAATG 2 cut(s) 750, 1077
BseMII CTCAG 1 cut(s) 798
BseNI ACTGG 1 cut(s) 698
BseRI GAGGAG 2 cut(s) 772, 1140
BseXI GCAGC 7 cut(s) 52, 79, 118, 266, 464, 806, 817
Bsh1236I CGCG 3 cut(s) 475, 561, 1271
BshFI GGCC 1 cut(s) 637
BsiHKAI GWGCWC 2 cut(s) 301, 1053
BslFI GGGAC 1 cut(s) 882
BslI CCNNNNNNNGG 2 cut(s) 1175, 1229
BsmAI GTCTC 3 cut(s) 16, 77, 650
BsmBI CGTCTC 2 cut(s) 16, 77
BsmFI GGGAC 1 cut(s) 882
BsnI GGCC 1 cut(s) 637
Bso31I GGTCTC 1 cut(s) 650
Bsp119I TTCGAA 1 cut(s) 1056
Bsp1286I GDGCHC 2 cut(s) 301, 1053
Bsp143I GATC 3 cut(s) 165, 523, 1091
Bsp1720I GCTNAGC 2 cut(s) 314, 593
BspACI CCGC 4 cut(s) 224, 251, 257, 935
BspANI GGCC 1 cut(s) 637
BspCNI CTCAG 1 cut(s) 797
BspFNI CGCG 3 cut(s) 475, 561, 1271
BspHI TCATGA 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 1184
BspPI GGATC 1 cut(s) 1099
BspQI GCTCTTC 3 cut(s) 306, 1041, 1058
BspT104I TTCGAA 1 cut(s) 1056
BspTI CTTAAG 1 cut(s) 872
BspTNI GGTCTC 1 cut(s) 650
BsrDI GCAATG 2 cut(s) 750, 1077
BsrI ACTGG 1 cut(s) 698
BssECI CCNNGG 3 cut(s) 733, 808, 1223
BssMI GATC 3 cut(s) 165, 523, 1091
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 345
BssT1I CCWWGG 1 cut(s) 733
Bst2BI CACGAG 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 639
Bst4CI ACNGT 8 cut(s) 448, 454, 520, 630, 1033, 1103, 1224, 1236
Bst6I CTCTTC 5 cut(s) 306, 543, 986, 1041, 1058
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 872
BstBAI YACGTR 1 cut(s) 1140
BstBI TTCGAA 1 cut(s) 1056
BstC8I GCNNGC 2 cut(s) 590, 1077
BstDEI CTNAG 6 cut(s) 314, 492, 593, 784, 948, 1107
BstDSI CCRYGG 2 cut(s) 808, 1223
BstF5I GGATG 4 cut(s) 446, 682, 778, 883
BstFNI CGCG 3 cut(s) 475, 561, 1271
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 3 cut(s) 168, 526, 1094
BstMAI GTCTC 3 cut(s) 16, 77, 650
BstMBI GATC 3 cut(s) 165, 523, 1091
BstMWI GCNNNNNNNGC 5 cut(s) 474, 594, 721, 827, 1076
BstNI CCWGG 1 cut(s) 639
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 637
BstUI CGCG 3 cut(s) 475, 561, 1271
BstV1I GCAGC 7 cut(s) 52, 79, 118, 266, 464, 806, 817
BstV2I GAAGAC 2 cut(s) 173, 377
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 1 cut(s) 637
BtgI CCRYGG 2 cut(s) 808, 1223
BtgZI GCGATG 1 cut(s) 1286
BtsCI GGATG 4 cut(s) 446, 682, 778, 883
BtsIMutI CAGTG 1 cut(s) 1029
BveI ACCTGC 1 cut(s) 1184
Cac8I GCNNGC 2 cut(s) 590, 1077
CciI TCATGA 1 cut(s) 37
CfoI GCGC 1 cut(s) 477
Cfr13I GGNCC 2 cut(s) 620, 1232
CseI GACGC 1 cut(s) 1277
CviAII CATG 3 cut(s) 38, 287, 459
DdeI CTNAG 6 cut(s) 314, 492, 593, 784, 948, 1107
DpnI GATC 3 cut(s) 167, 525, 1093
DpnII GATC 3 cut(s) 165, 523, 1091
DraI TTTAAA 1 cut(s) 970
DriI GACNNNNNGTC 1 cut(s) 177
Eam1104I CTCTTC 5 cut(s) 306, 543, 986, 1041, 1058
Eam1105I GACNNNNNGTC 1 cut(s) 177
EarI CTCTTC 5 cut(s) 306, 543, 986, 1041, 1058
Ecl136II GAGCTC 1 cut(s) 1051
Eco130I CCWWGG 1 cut(s) 733
Eco24I GRGCYC 1 cut(s) 1053
Eco31I GGTCTC 1 cut(s) 650
Eco47I GGWCC 2 cut(s) 620, 1232
Eco53kI GAGCTC 1 cut(s) 1051
Eco57I CTGAAG 1 cut(s) 967
Eco72I CACGTG 1 cut(s) 1140
EcoICRI GAGCTC 1 cut(s) 1051
EcoRII CCWGG 1 cut(s) 637
EcoT14I CCWWGG 1 cut(s) 733
EcoT38I GRGCYC 1 cut(s) 1053
ErhI CCWWGG 1 cut(s) 733
Esp3I CGTCTC 2 cut(s) 16, 77
FaeI CATG 3 cut(s) 41, 290, 462
FaqI GGGAC 1 cut(s) 882
FatI CATG 3 cut(s) 37, 286, 458
FauNDI CATATG 2 cut(s) 767, 1148
FbaI TGATCA 2 cut(s) 165, 523
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 8 cut(s) 66, 93, 132, 252, 255, 478, 795, 831
FokI GGATG 4 cut(s) 453, 689, 785, 890
FriOI GRGCYC 1 cut(s) 1053
Fsp4HI GCNGC 8 cut(s) 66, 93, 132, 252, 255, 478, 795, 831
FspBI CTAG 7 cut(s) 9, 141, 306, 834, 1157, 1163, 1309
GlaI GCGC 1 cut(s) 476
GluI GCNGC 8 cut(s) 66, 93, 132, 252, 255, 478, 795, 831
GsuI CTGGAG 1 cut(s) 660
HaeIII GGCC 1 cut(s) 637
HgaI GACGC 1 cut(s) 1277
HhaI GCGC 1 cut(s) 477
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 41, 290, 462
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HincII GTYRAC 1 cut(s) 901
HindII GTYRAC 1 cut(s) 901
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 3 cut(s) 274, 470, 1112
HphI GGTGA 2 cut(s) 933, 1109
Hpy166II GTNNAC 3 cut(s) 623, 901, 1189
Hpy188I TCNGA 4 cut(s) 390, 760, 787, 986
Hpy188III TCNNGA 8 cut(s) 9, 38, 163, 169, 360, 408, 1207, 1256
Hpy8I GTNNAC 3 cut(s) 623, 901, 1189
HpyAV CCTTC 7 cut(s) 8, 201, 735, 858, 948, 1055, 1271
HpyCH4III ACNGT 8 cut(s) 448, 454, 520, 630, 1033, 1103, 1224, 1236
HpyCH4IV ACGT 4 cut(s) 25, 422, 1139, 1285
HpyCH4V TGCA 6 cut(s) 350, 458, 480, 755, 891, 1245
HpyF10VI GCNNNNNNNGC 5 cut(s) 474, 594, 721, 827, 1076
HpyF3I CTNAG 6 cut(s) 314, 492, 593, 784, 948, 1107
HpySE526I ACGT 4 cut(s) 25, 422, 1139, 1285
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 41, 290, 462
HspAI GCGC 1 cut(s) 475
Ksp22I TGATCA 2 cut(s) 165, 523
Kzo9I GATC 3 cut(s) 165, 523, 1091
LguI GCTCTTC 3 cut(s) 306, 1041, 1058
LmnI GCTCC 1 cut(s) 1171
Lsp1109I GCAGC 7 cut(s) 52, 79, 118, 266, 464, 806, 817
LweI GCATC 3 cut(s) 489, 763, 764
MaeI CTAG 7 cut(s) 9, 141, 306, 834, 1157, 1163, 1309
MaeII ACGT 4 cut(s) 25, 422, 1139, 1285
MaeIII GTNAC 5 cut(s) 320, 448, 562, 1097, 1256
MalI GATC 3 cut(s) 167, 525, 1093
MboI GATC 3 cut(s) 165, 523, 1091
MhlI GDGCHC 2 cut(s) 301, 1053
MluCI AATT 1 cut(s) 196
MluI ACGCGT 1 cut(s) 559
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 1 cut(s) 583
MseI TTAA 4 cut(s) 846, 873, 969, 1299
MslI CAYNNNNRTG 3 cut(s) 36, 42, 628
MspA1I CMGCKG 1 cut(s) 257
MspCI CTTAAG 1 cut(s) 872
MspR9I CCNGG 1 cut(s) 639
MvaI CCWGG 1 cut(s) 639
MvnI CGCG 3 cut(s) 475, 561, 1271
MwoI GCNNNNNNNGC 5 cut(s) 474, 594, 721, 827, 1076
NdeI CATATG 2 cut(s) 767, 1148
NdeII GATC 3 cut(s) 165, 523, 1091
NlaIII CATG 3 cut(s) 41, 290, 462
NmuCI GTSAC 4 cut(s) 320, 448, 1097, 1256
NspI RCATGY 1 cut(s) 462
NspV TTCGAA 1 cut(s) 1056
OliI CACNNNNGTG 1 cut(s) 628
PagI TCATGA 1 cut(s) 37
PciSI GCTCTTC 3 cut(s) 306, 1041, 1058
PfeI GAWTC 2 cut(s) 274, 1112
PkrI GCNGC 8 cut(s) 67, 94, 133, 253, 256, 479, 796, 832
PleI GAGTC 1 cut(s) 464
PmaCI CACGTG 1 cut(s) 1140
PmlI CACGTG 1 cut(s) 1140
PpsI GAGTC 1 cut(s) 464
Ppu21I YACGTR 1 cut(s) 1140
Psp124BI GAGCTC 1 cut(s) 1053
Psp1406I AACGTT 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 637
PspCI CACGTG 1 cut(s) 1140
PspGI CCWGG 1 cut(s) 637
PspPI GGNCC 2 cut(s) 620, 1232
RseI CAYNNNNRTG 3 cut(s) 36, 42, 628
SacI GAGCTC 1 cut(s) 1053
SalI GTCGAC 1 cut(s) 899
SapI GCTCTTC 3 cut(s) 306, 1041, 1058
SaqAI TTAA 4 cut(s) 846, 873, 969, 1299
SatI GCNGC 8 cut(s) 66, 93, 132, 252, 255, 478, 795, 831
Sau3AI GATC 3 cut(s) 165, 523, 1091
Sau96I GGNCC 2 cut(s) 620, 1232
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 1 cut(s) 639
SduI GDGCHC 2 cut(s) 301, 1053
SfaNI GCATC 3 cut(s) 489, 763, 764
SfuI TTCGAA 1 cut(s) 1056
SinI GGWCC 2 cut(s) 620, 1232
SmiMI CAYNNNNRTG 3 cut(s) 36, 42, 628
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
Sse9I AATT 1 cut(s) 196
SsiI CCGC 4 cut(s) 224, 251, 257, 935
SspMI CTAG 7 cut(s) 9, 141, 306, 834, 1157, 1163, 1309
SstI GAGCTC 1 cut(s) 1053
StyD4I CCNGG 1 cut(s) 637
StyI CCWWGG 1 cut(s) 733
TaaI ACNGT 8 cut(s) 448, 454, 520, 630, 1033, 1103, 1224, 1236
TaiI ACGT 4 cut(s) 28, 425, 1142, 1288
TaqI TCGA 3 cut(s) 900, 1056, 1208
TasI AATT 1 cut(s) 196
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 2 cut(s) 274, 1112
Tru1I TTAA 4 cut(s) 846, 873, 969, 1299
Tru9I TTAA 4 cut(s) 846, 873, 969, 1299
TscAI CASTG 1 cut(s) 1036
TseFI GTSAC 4 cut(s) 320, 448, 1097, 1256
TseI GCWGC 7 cut(s) 65, 92, 131, 254, 477, 794, 830
Tsp45I GTSAC 4 cut(s) 320, 448, 1097, 1256
TspDTI ATGAA 1 cut(s) 679
TspRI CASTG 1 cut(s) 1036
Vha464I CTTAAG 1 cut(s) 872
VpaK11BI GGWCC 2 cut(s) 620, 1232
XbaI TCTAGA 1 cut(s) 8
XceI RCATGY 1 cut(s) 462
XcmI CCANNNNNNNNNTGG 1 cut(s) 630
XmiI GTMKAC 1 cut(s) 900
XspI CTAG 7 cut(s) 9, 141, 306, 834, 1157, 1163, 1309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.