Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002720

Physical Location & Seq

Genomic Coordinates Forward (+)

2085855 .. 2086646

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g03350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGGCATGCAGCTCAATCCAGGAAGGGGGAGGATTATTTCCTCGATCAAGACTGATGGTCAGCGAGTACCCGGGAATTCTTCATCAGCATTCTCCGCATTTGCGATCTTTGATGGGCACAATGGAAATGCAGCAGCAGTATATACAAGGGAGAATTTGTTAAAGCATGTGTTGGGTGCTATTCCCCGTGGGCTAGGAAGGGAGGAGTGGCTTCAAGCTTTACCTCGAGCCTTGGTTGCTGGCTTTGTGAAGACTGATAAGGATTTCCAGAGCAGAGGTGAAACTTCTGGAACAACAGCTACCTTTGTAATAGTTGATGGATGGACCGTGACAGTTGCATCAGTAGGAGACTCCCGTTGTATCTTAGATACTCAGGGTGGTGCTGTTTCCACCTTAACTGTTCGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

137

Amino Acids

14.34

Weight (kDa)

9.5

Isoelectric Point (pI)

20.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68410 AT1G68410 AT1G68410 AT1G68410
fragaria_vesca	FvH4_4g26880 FvH4_4g26880 FvH4_4g26880
malus_domestica	MD13G1036500.v1.1 MD13G1037200.v1.1 MD13G1037600.v1.1 MD16G1039100.v1.1
prunus_persica	Prupe.1G315600_v2.0.a1
pyrus_communis	pycom13g03190 pycom13g03200 pycom16g03350 pycom16g03360
rosa_chinensis	RchiOBHm_Chr4g0434641 RchiOBHm_Chr4g0434671
rosa_laevigata	RLG00000006658 RLG00000006660
rosa_multiflora	Rmu_co8077860.1_g000001 Rmu_sc0001105.1_g000001 Rmu_sc0007477.1_g000003 Rmu_sc0008439.1_g000010 Rmu_sc0023175.1_g000005
rosa_roxburghii	Rroxscaffold_5G00375880 Rroxscaffold_5G00375900
rosa_rugosa	Rorug04G0277400 Rorug04G0277400 Rorug04G0277500
rosa_samantha	Rh4AG333300 Rh4AG333800 Rh4BG341500 Rh4CG356400
rosa_wichuraiana	Rw4G028920 Rw4G028940 Rw4G029050 Rw4G029070 Rw4G029090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	76, 154
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	215
AhdI	GACNNNNNGTC	1 cut(s)	57
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	3 cut(s)	13, 218, 299
AluI	AGCT	3 cut(s)	13, 218, 299
Alw26I	GTCTC	1 cut(s)	342
Ama87I	CYCGRG	2 cut(s)	71, 225
ApeKI	GCWGC	3 cut(s)	10, 131, 134
ApoI	RAATTY	2 cut(s)	76, 154
AspS9I	GGNCC	1 cut(s)	324
AsuC2I	CCSGG	2 cut(s)	72, 73
AsuHPI	GGTGA	1 cut(s)	290
AvaI	CYCGRG	2 cut(s)	71, 225
AvaII	GGWCC	1 cut(s)	324
BaeGI	GKGCMC	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	3 cut(s)	22, 143, 146
BccI	CCATC	4 cut(s)	50, 107, 311, 315
BciT130I	CCWGG	1 cut(s)	21
BcnI	CCSGG	2 cut(s)	72, 73
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	1 cut(s)	194
BisI	GCNGC	3 cut(s)	11, 132, 135
BlsI	GCNGC	3 cut(s)	12, 133, 136
Bme1390I	CCNGG	3 cut(s)	21, 72, 73
Bme18I	GGWCC	1 cut(s)	324
BmeRI	GACNNNNNGTC	1 cut(s)	57
BmeT110I	CYCGRG	2 cut(s)	71, 225
BmgT120I	GGNCC	1 cut(s)	324
BmrFI	CCNGG	3 cut(s)	21, 72, 73
BmsI	GCATC	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	257
BpuMI	CCSGG	2 cut(s)	72, 73
BsaJI	CCNNGG	3 cut(s)	71, 187, 231
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	3 cut(s)	71, 187, 231
BseGI	GGATG	1 cut(s)	326
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	386
BseRI	GAGGAG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	120
BseXI	GCAGC	3 cut(s)	22, 143, 146
BsiHKCI	CYCGRG	2 cut(s)	71, 225
BsiSI	CCGG	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	342
BsmI	GAATGC	1 cut(s)	89
BsoBI	CYCGRG	2 cut(s)	71, 225
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	45, 105, 404
BspACI	CCGC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	385
BssECI	CCNNGG	3 cut(s)	71, 187, 231
BssMI	GATC	3 cut(s)	45, 105, 404
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	21
Bst4CI	ACNGT	3 cut(s)	328, 334, 400
BstC8I	GCNNGC	2 cut(s)	8, 241
BstDEI	CTNAG	2 cut(s)	364, 372
BstDSI	CCRYGG	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	326
BstKTI	GATC	3 cut(s)	48, 108, 407
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	3 cut(s)	45, 105, 404
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 236
BstNI	CCWGG	1 cut(s)	21
BstNSI	RCATGY	2 cut(s)	10, 170
BstSCI	CCNGG	3 cut(s)	19, 70, 71
BstSLI	GKGCMC	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	22, 143, 146
BstV2I	GAAGAC	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	326
Cac8I	GCNNGC	2 cut(s)	8, 241
Cfr13I	GGNCC	1 cut(s)	324
Cfr9I	CCCGGG	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	2 cut(s)	7, 167
CviJI	RGCY	7 cut(s)	13, 193, 211, 218, 230, 243, 299
CviKI_1	RGCY	7 cut(s)	13, 193, 211, 218, 230, 243, 299
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	2 cut(s)	364, 372
DpnI	GATC	3 cut(s)	47, 107, 406
DpnII	GATC	3 cut(s)	45, 105, 404
DriI	GACNNNNNGTC	1 cut(s)	57
Eam1105I	GACNNNNNGTC	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	324
Eco88I	CYCGRG	2 cut(s)	71, 225
EcoRI	GAATTC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	10, 170
FaiI	YATR	5 cut(s)	8, 142, 144, 168, 409
FatI	CATG	2 cut(s)	6, 166
Fnu4HI	GCNGC	3 cut(s)	11, 132, 135
FokI	GGATG	1 cut(s)	333
Fsp4HI	GCNGC	3 cut(s)	11, 132, 135
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	3 cut(s)	11, 132, 135
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	2 cut(s)	10, 170
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	290
Hpy188III	TCNNGA	3 cut(s)	49, 268, 288
HpyAV	CCTTC	2 cut(s)	18, 192
HpyCH4III	ACNGT	3 cut(s)	328, 334, 400
HpyCH4V	TGCA	3 cut(s)	10, 131, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 236
HpyF3I	CTNAG	2 cut(s)	364, 372
Hsp92II	CATG	2 cut(s)	10, 170
Kzo9I	GATC	3 cut(s)	45, 105, 404
LpnPI	CCDG	7 cut(s)	6, 33, 85, 225, 273, 281, 359
Lsp1109I	GCAGC	3 cut(s)	22, 143, 146
LweI	GCATC	1 cut(s)	347
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	3 cut(s)	47, 107, 406
MboI	GATC	3 cut(s)	45, 105, 404
MboII	GAAGA	2 cut(s)	72, 262
MhlI	GDGCHC	1 cut(s)	120
MluCI	AATT	2 cut(s)	76, 154
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	5 cut(s)	24, 52, 196, 234, 269
MseI	TTAA	2 cut(s)	161, 395
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	3 cut(s)	21, 72, 73
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	95, 236
NciI	CCSGG	2 cut(s)	72, 73
NdeII	GATC	3 cut(s)	45, 105, 404
NlaIII	CATG	2 cut(s)	10, 170
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	2 cut(s)	10, 170
PaeI	GCATGC	1 cut(s)	10
PaeR7I	CTCGAG	1 cut(s)	225
PctI	GAATGC	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	19
PkrI	GCNGC	3 cut(s)	12, 133, 136
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	19
PspGI	CCWGG	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	324
PspXI	VCTCGAGB	1 cut(s)	225
PsrI	GAACNNNNNNTAC	2 cut(s)	283, 315
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	161, 395
SatI	GCNGC	3 cut(s)	11, 132, 135
Sau3AI	GATC	3 cut(s)	45, 105, 404
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	3 cut(s)	21, 72, 73
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	7 cut(s)	15, 220, 226, 280, 301, 305, 395
SfaNI	GCATC	1 cut(s)	347
Sfr274I	CTCGAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	225
SmaI	CCCGGG	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
SphI	GCATGC	1 cut(s)	10
Sse9I	AATT	2 cut(s)	76, 154
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	3 cut(s)	19, 70, 71
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	3 cut(s)	328, 334, 400
TaqI	TCGA	3 cut(s)	44, 226, 403
TasI	AATT	2 cut(s)	76, 154
Tru1I	TTAA	2 cut(s)	161, 395
Tru9I	TTAA	2 cut(s)	161, 395
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	3 cut(s)	10, 131, 134
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	72
TspMI	CCCGGG	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	2 cut(s)	76, 154
XceI	RCATGY	2 cut(s)	10, 170
XhoI	CTCGAG	1 cut(s)	225
XmaI	CCCGGG	1 cut(s)	71
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.