Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002720

Physical Location & Seq

Genomic Coordinates Forward (+)

56673065 .. 56674361

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCTGTTTAATATTAGCAGATTGGTCCTCTTCGTTGTTGGCCAGGAGAGGAGGGGAGGACTCATAATTGCTTCTGATGGCATCTGGGATGCCCTATCCTCAGAAGAGGCAGCAAAATCTTGCCGTGGGTTGCCCGCTGAACTTGCTGCTAGACAAGTAGTGAAGGAGGCTTTAAGGAAGAAGTCACGTGATTCTTCTCATAAACTATCCAAGAAGCTATCAGCTGTGGGTATCGTGGAAGAACTATTTGAAGAAGGCTCTGCCATGCTTGCTGAAAGGCTGGGCAATGATGAGTGCACAGCACAATCAACAACACTGGGCTGTTTATGTGCTGTATGCCAAGTTGACCTTGCACCGAGTGAGGGTATATCTGTTCATGCTGGTTCCATCTTCTCCATGAGTTCAAAGCCTTGGCAAGGGCCTTTCCTCTGTTCTGATTGTCTAATAAGAAGGATGCCATGGAAGGAAAACGCCCTAGCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

161

Amino Acids

17.41

Weight (kDa)

6.16

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68410 AT1G68410 AT1G68410 AT1G68410
fragaria_vesca	FvH4_4g26880 FvH4_4g26880 FvH4_4g26880
malus_domestica	MD13G1036500.v1.1 MD13G1037200.v1.1 MD13G1037600.v1.1 MD16G1039100.v1.1
prunus_persica	Prupe.1G315600_v2.0.a1
pyrus_communis	pycom13g03190 pycom13g03200 pycom16g03350 pycom16g03360
rosa_chinensis	RchiOBHm_Chr4g0434641 RchiOBHm_Chr4g0434671
rosa_laevigata	RLG00000006658 RLG00000006660
rosa_multiflora	Rmu_co8077860.1_g000001 Rmu_sc0001105.1_g000001 Rmu_sc0007477.1_g000003 Rmu_sc0008439.1_g000010 Rmu_sc0023175.1_g000005
rosa_roxburghii	Rroxscaffold_5G00375880 Rroxscaffold_5G00375900
rosa_rugosa	Rorug04G0277400 Rorug04G0277400 Rorug04G0277500
rosa_samantha	Rh4AG333300 Rh4AG333800 Rh4BG341500 Rh4CG356400
rosa_wichuraiana	Rw4G028920 Rw4G028940 Rw4G029050 Rw4G029070 Rw4G029090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	135
AcoI	YGGCCR	1 cut(s)	40
AcvI	CACGTG	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	362, 416
AgsI	TTSAA	2 cut(s)	251, 405
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	2 cut(s)	217, 224
AluI	AGCT	2 cut(s)	217, 224
Alw21I	GWGCWC	1 cut(s)	299
Alw44I	GTGCAC	1 cut(s)	295
AoxI	GGCC	2 cut(s)	40, 419
ApaLI	GTGCAC	1 cut(s)	295
ApeKI	GCWGC	2 cut(s)	110, 146
AspS9I	GGNCC	2 cut(s)	25, 419
AvaII	GGWCC	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	299
BalI	TGGCCA	1 cut(s)	42
BbrPI	CACGTG	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	122, 133
BccI	CCATC	2 cut(s)	71, 395
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	1 cut(s)	44
BfaI	CTAG	2 cut(s)	150, 476
BisI	GCNGC	2 cut(s)	111, 147
BlsI	GCNGC	2 cut(s)	112, 148
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	25, 419
BmiI	GGNNCC	1 cut(s)	385
BmrFI	CCNGG	1 cut(s)	44
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	3 cut(s)	79, 90, 444
BmuI	ACTGGG	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	124, 410, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 416
Bse1I	ACTGG	1 cut(s)	321
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	3 cut(s)	124, 410, 458
BseGI	GGATG	2 cut(s)	94, 459
BseLI	CCNNNNNNNGG	2 cut(s)	362, 416
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	122, 133
BseYI	CCCAGC	1 cut(s)	280
BshFI	GGCC	2 cut(s)	42, 421
BsiHKAI	GWGCWC	1 cut(s)	299
BslI	CCNNNNNNNGG	2 cut(s)	362, 416
BsnI	GGCC	2 cut(s)	42, 421
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp19I	CCATGG	1 cut(s)	458
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	2 cut(s)	42, 421
BspCNI	CTCAG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	3 cut(s)	124, 410, 458
BssT1I	CCWWGG	2 cut(s)	410, 458
Bst2UI	CCWGG	1 cut(s)	44
Bst6I	CTCTTC	2 cut(s)	35, 99
BstBAI	YACGTR	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	135, 270
BstDEI	CTNAG	1 cut(s)	100
BstDSI	CCRYGG	2 cut(s)	124, 458
BstENI	CCTNNNNNAGG	1 cut(s)	414
BstF5I	GGATG	2 cut(s)	94, 459
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 269
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	122, 133
BsuRI	GGCC	2 cut(s)	42, 421
BtgI	CCRYGG	2 cut(s)	124, 458
BtsCI	GGATG	2 cut(s)	94, 459
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	2 cut(s)	135, 270
Cfr13I	GGNCC	2 cut(s)	25, 419
CviAII	CATG	4 cut(s)	265, 377, 397, 459
CviJI	RGCY	9 cut(s)	42, 170, 217, 224, 258, 280, 321, 409, 421
CviKI_1	RGCY	9 cut(s)	42, 170, 217, 224, 258, 280, 321, 409, 421
DdeI	CTNAG	1 cut(s)	100
DraIII	CACNNNGTG	1 cut(s)	359
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	2 cut(s)	35, 99
EarI	CTCTTC	2 cut(s)	35, 99
Eco130I	CCWWGG	2 cut(s)	410, 458
Eco47I	GGWCC	1 cut(s)	25
Eco72I	CACGTG	1 cut(s)	188
EcoNI	CCTNNNNNAGG	1 cut(s)	414
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	2 cut(s)	410, 458
ErhI	CCWWGG	2 cut(s)	410, 458
FaeI	CATG	4 cut(s)	268, 380, 400, 462
FaiI	YATR	9 cut(s)	65, 201, 266, 328, 337, 368, 378, 398, 460
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FatI	CATG	4 cut(s)	264, 376, 396, 458
FauI	CCCGC	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	111, 147
FokI	GGATG	2 cut(s)	101, 466
Fsp4HI	GCNGC	2 cut(s)	111, 147
FspBI	CTAG	2 cut(s)	150, 476
GluI	GCNGC	2 cut(s)	111, 147
GsaI	CCCAGC	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	42, 421
Hin1II	CATG	4 cut(s)	268, 380, 400, 462
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	2 cut(s)	60, 191
Hpy166II	GTNNAC	2 cut(s)	297, 346
Hpy188I	TCNGA	3 cut(s)	76, 103, 436
Hpy8I	GTNNAC	2 cut(s)	297, 346
HpyAV	CCTTC	4 cut(s)	157, 248, 444, 457
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	297, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 269
HpyF3I	CTNAG	1 cut(s)	100
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	4 cut(s)	268, 380, 400, 462
LpnPI	CCDG	6 cut(s)	29, 56, 70, 266, 302, 366
Lsp1109I	GCAGC	2 cut(s)	122, 133
LweI	GCATC	3 cut(s)	79, 90, 444
MaeI	CTAG	2 cut(s)	150, 476
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	183
MboII	GAAGA	7 cut(s)	22, 116, 186, 190, 251, 263, 382
MhlI	GDGCHC	1 cut(s)	299
MlsI	TGGCCA	1 cut(s)	42
MluCI	AATT	1 cut(s)	66
MluNI	TGGCCA	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	9 cut(s)	38, 42, 45, 50, 100, 109, 160, 355, 437
Mox20I	TGGCCA	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	42
MseI	TTAA	2 cut(s)	9, 173
Msp20I	TGGCCA	1 cut(s)	42
MspA1I	CMGCKG	2 cut(s)	137, 224
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	143, 269
NcoI	CCATGG	1 cut(s)	458
NlaIII	CATG	4 cut(s)	268, 380, 400, 462
NlaIV	GGNNCC	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	112, 148
PleI	GAGTC	1 cut(s)	54
PmaCI	CACGTG	1 cut(s)	188
PmlI	CACGTG	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	54
Ppu21I	YACGTR	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	42
PspCI	CACGTG	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	2 cut(s)	25, 419
PvuII	CAGCTG	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	9, 173
SatI	GCNGC	2 cut(s)	111, 147
Sau96I	GGNCC	2 cut(s)	25, 419
SchI	GAGTC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	4 cut(s)	190, 219, 226, 351
SfaNI	GCATC	3 cut(s)	79, 90, 444
SinI	GGWCC	1 cut(s)	25
Sse9I	AATT	1 cut(s)	66
SsiI	CCGC	1 cut(s)	135
SspI	AATATT	1 cut(s)	13
SspMI	CTAG	2 cut(s)	150, 476
StyD4I	CCNGG	1 cut(s)	42
StyI	CCWWGG	2 cut(s)	410, 458
TaiI	ACGT	1 cut(s)	190
TasI	AATT	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	9, 173
Tru9I	TTAA	2 cut(s)	9, 173
TscAI	CASTG	1 cut(s)	321
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	2 cut(s)	110, 146
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	321
VneI	GTGCAC	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	25
XagI	CCTNNNNNAGG	1 cut(s)	414
XspI	CTAG	2 cut(s)	150, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.