Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008439.1

Orthogroup ID

OG0002720

Physical Location & Seq

Genomic Coordinates Reverse (-)

40175 .. 46707

Gene Structure 6533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008439.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

gaggctttaaggtcaaggggtttaaaggatgatacaacctgtatagttgttgacataatccctcctgataactcagtacagcctacaactcccccaaaaaagcagaacaagctgagggccctgttgttcaggaagaagtcacgtgattctgctcacaaactatccaagaagctatcagctgtgggtattgtggaagaactatttgaagaaggctctgccatgcttgctgaaaggctgggcaatgatgagtgcacggcacaatcaacaacatctgggctgtttatgtgtgctgtatgccaagttgaccttgcaccgagtgagggcatatctgttcatgctggttccatcttctccatgagttcaaagccttggcaagggcctttcctctgttctgattgtcgtaataagaaggatgccatggaaggaaaacgccctagcggattaagggctcgccaccctgatcatcctattaagtctataagattagacaatgcagcgttccttgtggacaatagcatgacatgtgaccagtgtgtcgatgcatcaaccaataccataaaatatcgaaatgtcacaagtgactttagaagtaaaggttggatacaaaggagccttggtggcgtcaatgccaccctgaggcggcagggggaaggcggcgccggccaaggatggccggatttgggggtgaacggcgccgtgaggcgcaggggctccttcggtgtccaaaaaccgagttttacttctttttgttctgaaaaagggatgtccgtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

257

Amino Acids

27.91

Weight (kDa)

9.28

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68410 AT1G68410 AT1G68410 AT1G68410
fragaria_vesca	FvH4_4g26880 FvH4_4g26880 FvH4_4g26880
malus_domestica	MD13G1036500.v1.1 MD13G1037200.v1.1 MD13G1037600.v1.1 MD16G1039100.v1.1
prunus_persica	Prupe.1G315600_v2.0.a1
pyrus_communis	pycom13g03190 pycom13g03200 pycom16g03350 pycom16g03360
rosa_chinensis	RchiOBHm_Chr4g0434641 RchiOBHm_Chr4g0434671
rosa_laevigata	RLG00000006658 RLG00000006660
rosa_multiflora	Rmu_co8077860.1_g000001 Rmu_sc0001105.1_g000001 Rmu_sc0007477.1_g000003 Rmu_sc0008439.1_g000010 Rmu_sc0023175.1_g000005
rosa_roxburghii	Rroxscaffold_5G00375880 Rroxscaffold_5G00375900
rosa_rugosa	Rorug04G0277400 Rorug04G0277400 Rorug04G0277500
rosa_samantha	Rh4AG333300 Rh4AG333800 Rh4BG341500 Rh4CG356400
rosa_wichuraiana	Rw4G028920 Rw4G028940 Rw4G029050 Rw4G029070 Rw4G029090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	533
AccB1I	GGYRCC	2 cut(s)	656, 692
AciI	CCGC	3 cut(s)	438, 640, 654
AcoI	YGGCCR	2 cut(s)	661, 671
AcvI	CACGTG	1 cut(s)	143
AcyI	GRCGYC	3 cut(s)	621, 657, 693
AdeI	CACNNNGTG	1 cut(s)	317
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	5 cut(s)	320, 374, 636, 639, 680
AflIII	ACRYGT	1 cut(s)	521
AgsI	TTSAA	2 cut(s)	206, 363
AjuI	GAANNNNNNNTTGG	2 cut(s)	580, 612
AluBI	AGCT	3 cut(s)	112, 172, 179
AluI	AGCT	3 cut(s)	112, 172, 179
Alw21I	GWGCWC	1 cut(s)	254
Alw44I	GTGCAC	1 cut(s)	250
AoxI	GGCC	4 cut(s)	117, 377, 661, 671
ApaI	GGGCCC	1 cut(s)	121
ApaLI	GTGCAC	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	494
AspLEI	GCGC	3 cut(s)	659, 695, 705
AspS9I	GGNCC	3 cut(s)	117, 118, 377
AsuHPI	GGTGA	1 cut(s)	697
AxyI	CCTNAGG	1 cut(s)	635
BaeGI	GKGCMC	2 cut(s)	121, 254
BanI	GGYRCC	2 cut(s)	656, 692
BanII	GRGCYC	3 cut(s)	121, 451, 713
BbrPI	CACGTG	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	254
BbvCI	CCTCAGC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	506
BccI	CCATC	2 cut(s)	353, 663
BceAI	ACGGC	3 cut(s)	270, 680, 706
BciVI	GTATCC	1 cut(s)	594
BclI	TGATCA	1 cut(s)	460
BfaI	CTAG	1 cut(s)	435
BfoI	RGCGCY	2 cut(s)	660, 696
BfuI	GTATCC	1 cut(s)	594
BglI	GCCNNNNNGGC	1 cut(s)	618
BisI	GCNGC	3 cut(s)	495, 641, 655
BlsI	GCNGC	3 cut(s)	496, 642, 656
BmgT120I	GGNCC	3 cut(s)	117, 118, 377
BmiI	GGNNCC	6 cut(s)	119, 343, 611, 658, 694, 712
BmsI	GCATC	3 cut(s)	403, 529, 551
Bpu10I	CCTNAGC	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	143
BsaHI	GRCGYC	3 cut(s)	621, 657, 693
BsaJI	CCNNGG	4 cut(s)	368, 417, 613, 664
BsaXI	ACNNNNNCTCC	2 cut(s)	601, 631
Bsc4I	CCNNNNNNNGG	5 cut(s)	320, 374, 636, 639, 680
Bse118I	RCCGGY	1 cut(s)	659
Bse1I	ACTGG	1 cut(s)	529
Bse21I	CCTNAGG	1 cut(s)	635
Bse3DI	GCAATG	1 cut(s)	247
BseDI	CCNNGG	4 cut(s)	368, 417, 613, 664
BseGI	GGATG	5 cut(s)	34, 418, 463, 674, 768
BseLI	CCNNNNNNNGG	5 cut(s)	320, 374, 636, 639, 680
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	3 cut(s)	87, 104, 626
BseNI	ACTGG	1 cut(s)	529
BseSI	GKGCMC	2 cut(s)	121, 254
BseXI	GCAGC	1 cut(s)	506
BseYI	CCCAGC	1 cut(s)	235
BshFI	GGCC	4 cut(s)	119, 379, 663, 673
BshNI	GGYRCC	2 cut(s)	656, 692
BsiHKAI	GWGCWC	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	660, 674
BslI	CCNNNNNNNGG	5 cut(s)	320, 374, 636, 639, 680
BsnI	GGCC	4 cut(s)	119, 379, 663, 673
Bsp120I	GGGCCC	1 cut(s)	117
Bsp1286I	GDGCHC	4 cut(s)	121, 254, 451, 713
Bsp143I	GATC	1 cut(s)	460
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	3 cut(s)	438, 640, 654
BspANI	GGCC	4 cut(s)	119, 379, 663, 673
BspCNI	CTCAG	3 cut(s)	86, 105, 627
BspLI	GGNNCC	6 cut(s)	119, 343, 611, 658, 694, 712
BspT107I	GGYRCC	2 cut(s)	656, 692
BsrDI	GCAATG	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	659
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	1 cut(s)	659
BssECI	CCNNGG	4 cut(s)	368, 417, 613, 664
BssMI	GATC	1 cut(s)	460
BssNI	GRCGYC	3 cut(s)	621, 657, 693
BssT1I	CCWWGG	4 cut(s)	368, 417, 613, 664
BstACI	GRCGYC	3 cut(s)	621, 657, 693
BstBAI	YACGTR	1 cut(s)	143
BstC8I	GCNNGC	3 cut(s)	225, 451, 661
BstDEI	CTNAG	3 cut(s)	73, 113, 635
BstDSI	CCRYGG	1 cut(s)	417
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstF5I	GGATG	5 cut(s)	34, 418, 463, 674, 768
BstH2I	RGCGCY	2 cut(s)	660, 696
BstHHI	GCGC	3 cut(s)	659, 695, 705
BstKTI	GATC	1 cut(s)	463
BstMBI	GATC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 224, 618, 660
BstNSI	RCATGY	1 cut(s)	525
BstSLI	GKGCMC	2 cut(s)	121, 254
BstV1I	GCAGC	1 cut(s)	506
Bsu36I	CCTNAGG	1 cut(s)	635
BsuI	GTATCC	1 cut(s)	594
BsuRI	GGCC	4 cut(s)	119, 379, 663, 673
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	5 cut(s)	34, 418, 463, 674, 768
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	3 cut(s)	225, 451, 661
CfoI	GCGC	3 cut(s)	659, 695, 705
Cfr10I	RCCGGY	1 cut(s)	659
Cfr13I	GGNCC	3 cut(s)	117, 118, 377
CseI	GACGC	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	6 cut(s)	220, 335, 355, 418, 517, 522
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	3 cut(s)	73, 113, 635
DinI	GGCGCC	2 cut(s)	658, 694
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
DraI	TTTAAA	1 cut(s)	24
DraIII	CACNNNGTG	1 cut(s)	317
DrdI	GACNNNNNNGTC	1 cut(s)	533
DseDI	GACNNNNNNGTC	1 cut(s)	533
EaeI	YGGCCR	2 cut(s)	661, 671
Eco130I	CCWWGG	4 cut(s)	368, 417, 613, 664
Eco24I	GRGCYC	3 cut(s)	121, 451, 713
Eco72I	CACGTG	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	635
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoO109I	RGGNCCY	3 cut(s)	117, 118, 377
EcoT14I	CCWWGG	4 cut(s)	368, 417, 613, 664
EcoT22I	ATGCAT	1 cut(s)	544
EcoT38I	GRGCYC	3 cut(s)	121, 451, 713
EgeI	GGCGCC	2 cut(s)	658, 694
EheI	GGCGCC	2 cut(s)	658, 694
ErhI	CCWWGG	4 cut(s)	368, 417, 613, 664
FaeI	CATG	6 cut(s)	223, 338, 358, 421, 520, 525
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FatI	CATG	6 cut(s)	219, 334, 354, 417, 516, 521
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	3 cut(s)	495, 641, 655
FokI	GGATG	4 cut(s)	41, 425, 450, 681
FriOI	GRGCYC	3 cut(s)	121, 451, 713
Fsp4HI	GCNGC	3 cut(s)	495, 641, 655
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	3 cut(s)	658, 694, 704
GluI	GCNGC	3 cut(s)	495, 641, 655
GsaI	CCCAGC	1 cut(s)	239
HaeII	RGCGCY	2 cut(s)	660, 696
HaeIII	GGCC	4 cut(s)	119, 379, 663, 673
HapII	CCGG	2 cut(s)	660, 674
HgaI	GACGC	1 cut(s)	610
HhaI	GCGC	3 cut(s)	659, 695, 705
Hin1I	GRCGYC	3 cut(s)	621, 657, 693
Hin1II	CATG	6 cut(s)	223, 338, 358, 421, 520, 525
Hin6I	GCGC	3 cut(s)	657, 693, 703
HinP1I	GCGC	3 cut(s)	657, 693, 703
HincII	GTYRAC	2 cut(s)	52, 304
HindII	GTYRAC	2 cut(s)	52, 304
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	2 cut(s)	660, 674
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	5 cut(s)	52, 252, 304, 508, 688
Hpy188I	TCNGA	2 cut(s)	394, 754
Hpy188III	TCNNGA	2 cut(s)	65, 130
Hpy8I	GTNNAC	5 cut(s)	52, 252, 304, 508, 688
HpyAV	CCTTC	5 cut(s)	203, 403, 416, 644, 724
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	4 cut(s)	252, 311, 494, 542
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 224, 618, 660
HpyF3I	CTNAG	3 cut(s)	73, 113, 635
HpySE526I	ACGT	1 cut(s)	142
Hsp92I	GRCGYC	3 cut(s)	621, 657, 693
Hsp92II	CATG	6 cut(s)	223, 338, 358, 421, 520, 525
HspAI	GCGC	3 cut(s)	657, 693, 703
KasI	GGCGCC	2 cut(s)	656, 692
KroI	GCCGGC	1 cut(s)	659
KroNI	GCCGGC	1 cut(s)	661
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	1 cut(s)	460
LmnI	GCTCC	2 cut(s)	609, 716
Lsp1109I	GCAGC	1 cut(s)	506
LweI	GCATC	3 cut(s)	403, 529, 551
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	4 cut(s)	138, 524, 571, 578
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	4 cut(s)	145, 206, 218, 340
MhlI	GDGCHC	4 cut(s)	121, 254, 451, 713
Mly113I	GGCGCC	2 cut(s)	657, 693
MmeI	TCCRAC	1 cut(s)	578
MnlI	CCTC	6 cut(s)	72, 108, 313, 395, 630, 693
Mph1103I	ATGCAT	1 cut(s)	544
MroNI	GCCGGC	1 cut(s)	659
MseI	TTAA	4 cut(s)	8, 23, 443, 471
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	2 cut(s)	660, 674
MwoI	GCNNNNNNNGC	4 cut(s)	109, 224, 618, 660
NaeI	GCCGGC	1 cut(s)	661
NarI	GGCGCC	2 cut(s)	657, 693
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	1 cut(s)	460
NgoMIV	GCCGGC	1 cut(s)	659
NlaIII	CATG	6 cut(s)	223, 338, 358, 421, 520, 525
NlaIV	GGNNCC	6 cut(s)	119, 343, 611, 658, 694, 712
NmuCI	GTSAC	4 cut(s)	138, 524, 571, 578
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	1 cut(s)	525
PciI	ACATGT	1 cut(s)	521
PdiI	GCCGGC	1 cut(s)	661
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	496, 642, 656
PluTI	GGCGCC	2 cut(s)	660, 696
PmaCI	CACGTG	1 cut(s)	143
PmlI	CACGTG	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	143
PscI	ACATGT	1 cut(s)	521
PspCI	CACGTG	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	235
PspN4I	GGNNCC	6 cut(s)	119, 343, 611, 658, 694, 712
PspOMI	GGGCCC	1 cut(s)	117
PspPI	GGNCC	3 cut(s)	117, 118, 377
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SaqAI	TTAA	4 cut(s)	8, 23, 443, 471
SatI	GCNGC	3 cut(s)	495, 641, 655
Sau3AI	GATC	1 cut(s)	460
Sau96I	GGNCC	3 cut(s)	117, 118, 377
SduI	GDGCHC	4 cut(s)	121, 254, 451, 713
SetI	ASST	8 cut(s)	14, 41, 114, 145, 174, 181, 309, 598
SfaNI	GCATC	3 cut(s)	403, 529, 551
SfoI	GGCGCC	2 cut(s)	658, 694
SsiI	CCGC	3 cut(s)	438, 640, 654
SspDI	GGCGCC	2 cut(s)	656, 692
SspMI	CTAG	1 cut(s)	435
StyI	CCWWGG	4 cut(s)	368, 417, 613, 664
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	2 cut(s)	537, 565
TatI	WGTACW	1 cut(s)	76
TauI	GCSGC	2 cut(s)	643, 657
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	4 cut(s)	8, 23, 443, 471
Tru9I	TTAA	4 cut(s)	8, 23, 443, 471
TscAI	CASTG	1 cut(s)	536
TseFI	GTSAC	4 cut(s)	138, 524, 571, 578
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	4 cut(s)	138, 524, 571, 578
TspDTI	ATGAA	1 cut(s)	323
TspGWI	ACGGA	1 cut(s)	757
TspRI	CASTG	1 cut(s)	536
VneI	GTGCAC	1 cut(s)	250
XagI	CCTNNNNNAGG	1 cut(s)	372
XceI	RCATGY	1 cut(s)	525
XspI	CTAG	1 cut(s)	435
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.