Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002720

Physical Location & Seq

Genomic Coordinates Forward (+)

2568523 .. 2569629

Gene Structure 1107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1037200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGATGTTGGGGAGTTTATAGTTCCAATACCATATGTGAAACAAGTCAAGCTATCAAATGCCGGTGGGAGGCTTATAATTGCTTCGGATGGCATCTGGGATGCTATATCTTCCGAAATGGCAGCACAGTCTTGCCGTGGGTTGCCAGCTGAACTTGCTGCTAGACAAGTTGTGAAGGAGGCATTAAGGTCAAGGGGTCTAAAGGATGATACAACCTGCATAGTTGTTGACATAATCCCTCCTGATACTACGGTAGAGCCCTCAACTCCGCCAAAAAAGATTAACAAGTTTAGGACCCTTTTTTTCAGAAAGAAATCGCGTGCTTCTGCTAATAAACTATCCAAGAAGCTATCGGCTGTGGGTATTGTTGAGGAGTTATTTGAAGAAGGGTCTGCTATGCTTGCTGAAAGGTTGGGCAGCGATGAGTGCACATCACAATCAACATCTGGGCTGTTCATGTGTGCTGTATGCCAAGTTGACCTTGCACCGAGCGAGGGGCATATCGGTTCACGCGGGTTCTATCTTCTCAACCAGTTCAAAGCCTTGGCAAGGGCCGTTTCCTCTGTTCTGATTGTCGTAACAAGAAGGATGCCATGGAAGGAAAACGCCCTAGCGGAGTCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

209

Amino Acids

22.59

Weight (kDa)

8.6

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68410 AT1G68410 AT1G68410 AT1G68410
fragaria_vesca	FvH4_4g26880 FvH4_4g26880 FvH4_4g26880
malus_domestica	MD13G1036500.v1.1 MD13G1037200.v1.1 MD13G1037600.v1.1 MD16G1039100.v1.1
prunus_persica	Prupe.1G315600_v2.0.a1
pyrus_communis	pycom13g03190 pycom13g03200 pycom16g03350 pycom16g03360
rosa_chinensis	RchiOBHm_Chr4g0434641 RchiOBHm_Chr4g0434671
rosa_laevigata	RLG00000006658 RLG00000006660
rosa_multiflora	Rmu_co8077860.1_g000001 Rmu_sc0001105.1_g000001 Rmu_sc0007477.1_g000003 Rmu_sc0008439.1_g000010 Rmu_sc0023175.1_g000005
rosa_roxburghii	Rroxscaffold_5G00375880 Rroxscaffold_5G00375900
rosa_rugosa	Rorug04G0277400 Rorug04G0277400 Rorug04G0277500
rosa_samantha	Rh4AG333300 Rh4AG333800 Rh4BG341500 Rh4CG356400
rosa_wichuraiana	Rw4G028920 Rw4G028940 Rw4G029050 Rw4G029070 Rw4G029090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
Acc36I	ACCTGC	1 cut(s)	224
AccII	CGCG	2 cut(s)	319, 513
AciI	CCGC	3 cut(s)	269, 513, 614
AfiI	CCNNNNNNNGG	3 cut(s)	69, 494, 549
AgsI	TTSAA	2 cut(s)	383, 538
AluBI	AGCT	3 cut(s)	52, 149, 349
AluI	AGCT	3 cut(s)	52, 149, 349
Alw21I	GWGCWC	1 cut(s)	431
Alw44I	GTGCAC	1 cut(s)	427
AoxI	GGCC	1 cut(s)	552
ApaLI	GTGCAC	1 cut(s)	427
ApeKI	GCWGC	3 cut(s)	122, 158, 417
AspS9I	GGNCC	2 cut(s)	294, 552
AvaII	GGWCC	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	431
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	3 cut(s)	134, 145, 429
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	2 cut(s)	120, 539
BfaI	CTAG	2 cut(s)	162, 611
BfuAI	ACCTGC	1 cut(s)	224
BisI	GCNGC	3 cut(s)	123, 159, 418
BlsI	GCNGC	3 cut(s)	124, 160, 419
Bme18I	GGWCC	1 cut(s)	294
BmgT120I	GGNCC	2 cut(s)	294, 552
BmiI	GGNNCC	1 cut(s)	296
BmsI	GCATC	3 cut(s)	91, 102, 579
BsaJI	CCNNGG	3 cut(s)	136, 543, 593
BsaXI	ACNNNNNCTCC	1 cut(s)	608
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 494, 549
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	532
BseDI	CCNNGG	3 cut(s)	136, 543, 593
BseGI	GGATG	5 cut(s)	10, 94, 106, 211, 594
BseLI	CCNNNNNNNGG	3 cut(s)	69, 494, 549
BseNI	ACTGG	1 cut(s)	532
BseRI	GAGGAG	1 cut(s)	386
BseSI	GKGCMC	1 cut(s)	431
BseXI	GCAGC	3 cut(s)	134, 145, 429
Bsh1236I	CGCG	2 cut(s)	319, 513
BshFI	GGCC	1 cut(s)	554
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	69, 494, 549
BsnI	GGCC	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	261, 431
Bsp19I	CCATGG	1 cut(s)	593
BspACI	CCGC	3 cut(s)	269, 513, 614
BspANI	GGCC	1 cut(s)	554
BspFNI	CGCG	2 cut(s)	319, 513
BspLI	GGNNCC	1 cut(s)	296
BspMI	ACCTGC	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	532
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	3 cut(s)	136, 543, 593
BssT1I	CCWWGG	2 cut(s)	543, 593
Bst4CI	ACNGT	2 cut(s)	129, 253
BstC8I	GCNNGC	3 cut(s)	147, 321, 402
BstDSI	CCRYGG	2 cut(s)	136, 593
BstENI	CCTNNNNNAGG	1 cut(s)	547
BstF5I	GGATG	5 cut(s)	10, 94, 106, 211, 594
BstFNI	CGCG	2 cut(s)	319, 513
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 401, 426
BstSLI	GKGCMC	1 cut(s)	431
BstUI	CGCG	2 cut(s)	319, 513
BstV1I	GCAGC	3 cut(s)	134, 145, 429
BsuRI	GGCC	1 cut(s)	554
BtgI	CCRYGG	2 cut(s)	136, 593
BtgZI	GCGATG	1 cut(s)	435
BtsCI	GGATG	5 cut(s)	10, 94, 106, 211, 594
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	3 cut(s)	147, 321, 402
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	294, 552
CviAII	CATG	2 cut(s)	457, 594
CviJI	RGCY	9 cut(s)	52, 73, 149, 259, 349, 356, 451, 542, 554
CviKI_1	RGCY	9 cut(s)	52, 73, 149, 259, 349, 356, 451, 542, 554
EciI	GGCGGA	1 cut(s)	258
Eco130I	CCWWGG	2 cut(s)	543, 593
Eco24I	GRGCYC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	294
EcoNI	CCTNNNNNAGG	1 cut(s)	547
EcoO109I	RGGNCCY	1 cut(s)	294
EcoT14I	CCWWGG	2 cut(s)	543, 593
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	2 cut(s)	543, 593
FaeI	CATG	2 cut(s)	460, 597
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FatI	CATG	2 cut(s)	456, 593
FauI	CCCGC	1 cut(s)	506
FauNDI	CATATG	1 cut(s)	34
Fnu4HI	GCNGC	3 cut(s)	123, 159, 418
FokI	GGATG	5 cut(s)	17, 101, 113, 218, 601
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	3 cut(s)	123, 159, 418
FspBI	CTAG	2 cut(s)	162, 611
GluI	GCNGC	3 cut(s)	123, 159, 418
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	2 cut(s)	460, 597
HincII	GTYRAC	2 cut(s)	229, 478
HindII	GTYRAC	2 cut(s)	229, 478
HinfI	GANTC	1 cut(s)	617
HpaII	CCGG	1 cut(s)	63
Hpy166II	GTNNAC	4 cut(s)	229, 429, 478, 509
Hpy188I	TCNGA	5 cut(s)	88, 115, 308, 570, 622
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	4 cut(s)	229, 429, 478, 509
HpyAV	CCTTC	4 cut(s)	169, 380, 579, 592
HpyCH4III	ACNGT	2 cut(s)	129, 253
HpyCH4V	TGCA	3 cut(s)	219, 429, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 401, 426
Hsp92II	CATG	2 cut(s)	460, 597
LpnPI	CCDG	7 cut(s)	76, 82, 159, 229, 255, 432, 545
Lsp1109I	GCAGC	3 cut(s)	134, 145, 429
LweI	GCATC	3 cut(s)	91, 102, 579
MaeI	CTAG	2 cut(s)	162, 611
MaeIII	GTNAC	1 cut(s)	577
MboII	GAAGA	3 cut(s)	102, 395, 515
MhlI	GDGCHC	2 cut(s)	261, 431
MluCI	AATT	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	626
MnlI	CCTC	7 cut(s)	63, 172, 249, 271, 364, 487, 571
MseI	TTAA	2 cut(s)	185, 282
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	63
MvnI	CGCG	2 cut(s)	319, 513
MwoI	GCNNNNNNNGC	3 cut(s)	155, 401, 426
NcoI	CCATGG	1 cut(s)	593
NdeI	CATATG	1 cut(s)	34
NlaIII	CATG	2 cut(s)	460, 597
NlaIV	GGNNCC	1 cut(s)	296
PkrI	GCNGC	3 cut(s)	124, 160, 419
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
PpuMI	RGGWCCY	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	2 cut(s)	294, 552
PspPPI	RGGWCCY	1 cut(s)	294
PvuII	CAGCTG	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	185, 282
SatI	GCNGC	3 cut(s)	123, 159, 418
Sau96I	GGNCC	2 cut(s)	294, 552
SchI	GAGTC	1 cut(s)	626
SduI	GDGCHC	2 cut(s)	261, 431
SetI	ASST	7 cut(s)	54, 151, 191, 218, 351, 413, 483
SfaNI	GCATC	3 cut(s)	91, 102, 579
SinI	GGWCC	1 cut(s)	294
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	3 cut(s)	269, 513, 614
SspMI	CTAG	2 cut(s)	162, 611
StyI	CCWWGG	2 cut(s)	543, 593
TaaI	ACNGT	2 cut(s)	129, 253
TasI	AATT	1 cut(s)	78
Tru1I	TTAA	2 cut(s)	185, 282
Tru9I	TTAA	2 cut(s)	185, 282
TseI	GCWGC	3 cut(s)	122, 158, 417
TspDTI	ATGAA	1 cut(s)	445
VneI	GTGCAC	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	294
XagI	CCTNNNNNAGG	1 cut(s)	547
XspI	CTAG	2 cut(s)	162, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.