RchiOBHm_Chr4g0434671

protein phosphatase 2C 15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0002720
Physical Location & Seq
Forward (+)
58375983 .. 58377133
1151 bp
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UTR
Exon/CDS
Intron
PRQ40312

Sequence Viewer

Length: 483 bp
ATGGATGTTGTGGAGTTCATAGTTCCAATACCATATGTGAAACAAGTCAAGGGAGGACTCATAATTGTTTCTGATGGCATCTGGGATGCCCTATCCTCAGAAGAGGCAGCAAAATCTTGCCGTGGGTTGCCTGCTGAACTTGCTGCTAGACAAGTAGTGAAGAAGTCACGTGATTCTTCTCATAAACTATCCAAGAAGCTATCAGCTGTGGGTATTGTGGAAGAACTATTTGAAGAAGGCTCTGCCACGCTTGCTGAAAGGCTGGGCAATGATGAGTGCATGGCACAATCAACAACATCTGGGCCGTTTATGTGTGCTGTATGCCAAGTTGGCCTCGCACCGAGTGAGGGTATATCTGTTCATGCTGGTTCCATCTGCTCCATGAGTTCAAAGCCTTGGCAAGGGCCTTTCCTCTGTTCTGATTGTCGTAATAAGAAGGATGCCATGGAAGGAAAACGCCCTAGCGGAGTAAGAGTAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

160

Amino Acids

17.0

Weight (kDa)

6.72

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 465
AcvI CACGTG 1 cut(s) 170
AdeI CACNNNGTG 1 cut(s) 344
AfiI CCNNNNNNNGG 2 cut(s) 347, 401
AgsI TTSAA 2 cut(s) 233, 390
AluBI AGCT 2 cut(s) 199, 206
AluI AGCT 2 cut(s) 199, 206
AoxI GGCC 3 cut(s) 302, 331, 404
ApeKI GCWGC 2 cut(s) 107, 143
AspS9I GGNCC 2 cut(s) 302, 404
BbrPI CACGTG 1 cut(s) 170
BbvI GCAGC 2 cut(s) 119, 130
BccI CCATC 2 cut(s) 68, 380
BceAI ACGGC 2 cut(s) 105, 289
BfaI CTAG 2 cut(s) 147, 462
BglI GCCNNNNNGGC 1 cut(s) 330
BisI GCNGC 2 cut(s) 108, 144
BlsI GCNGC 2 cut(s) 109, 145
BmgT120I GGNCC 2 cut(s) 302, 404
BmiI GGNNCC 1 cut(s) 370
BmsI GCATC 3 cut(s) 76, 87, 430
BsaAI YACGTR 1 cut(s) 170
BsaJI CCNNGG 3 cut(s) 121, 395, 444
BsaXI ACNNNNNCTCC 1 cut(s) 459
Bsc4I CCNNNNNNNGG 2 cut(s) 347, 401
Bse3DI GCAATG 1 cut(s) 274
BseDI CCNNGG 3 cut(s) 121, 395, 444
BseGI GGATG 3 cut(s) 10, 91, 445
BseLI CCNNNNNNNGG 2 cut(s) 347, 401
BseMI GCAATG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 111
BseXI GCAGC 2 cut(s) 119, 130
BseYI CCCAGC 1 cut(s) 262
BshFI GGCC 3 cut(s) 304, 333, 406
BslI CCNNNNNNNGG 2 cut(s) 347, 401
BsnI GGCC 3 cut(s) 304, 333, 406
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 1 cut(s) 465
BspANI GGCC 3 cut(s) 304, 333, 406
BspCNI CTCAG 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 370
BsrDI GCAATG 1 cut(s) 274
BssECI CCNNGG 3 cut(s) 121, 395, 444
BssT1I CCWWGG 2 cut(s) 395, 444
Bst6I CTCTTC 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 132, 252
BstDEI CTNAG 1 cut(s) 97
BstDSI CCRYGG 2 cut(s) 121, 444
BstENI CCTNNNNNAGG 1 cut(s) 399
BstF5I GGATG 3 cut(s) 10, 91, 445
BstMWI GCNNNNNNNGC 3 cut(s) 140, 251, 330
BstV1I GCAGC 2 cut(s) 119, 130
BsuRI GGCC 3 cut(s) 304, 333, 406
BtgI CCRYGG 2 cut(s) 121, 444
BtsCI GGATG 3 cut(s) 10, 91, 445
Cac8I GCNNGC 2 cut(s) 132, 252
Cfr13I GGNCC 2 cut(s) 302, 404
CviAII CATG 4 cut(s) 280, 362, 382, 445
CviJI RGCY 8 cut(s) 199, 206, 240, 262, 304, 333, 394, 406
CviKI_1 RGCY 8 cut(s) 199, 206, 240, 262, 304, 333, 394, 406
DdeI CTNAG 1 cut(s) 97
DraIII CACNNNGTG 1 cut(s) 344
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 2 cut(s) 395, 444
Eco72I CACGTG 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 399
EcoO109I RGGNCCY 1 cut(s) 404
EcoT14I CCWWGG 2 cut(s) 395, 444
ErhI CCWWGG 2 cut(s) 395, 444
FaeI CATG 4 cut(s) 283, 365, 385, 448
FatI CATG 4 cut(s) 279, 361, 381, 444
FauNDI CATATG 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 108, 144
FokI GGATG 3 cut(s) 17, 98, 452
Fsp4HI GCNGC 2 cut(s) 108, 144
FspBI CTAG 2 cut(s) 147, 462
GluI GCNGC 2 cut(s) 108, 144
GsaI CCCAGC 1 cut(s) 266
HaeIII GGCC 3 cut(s) 304, 333, 406
Hin1II CATG 4 cut(s) 283, 365, 385, 448
HinfI GANTC 2 cut(s) 57, 173
Hpy188I TCNGA 3 cut(s) 73, 100, 421
HpyAV CCTTC 3 cut(s) 230, 430, 443
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 251, 330
HpyF3I CTNAG 1 cut(s) 97
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 4 cut(s) 283, 365, 385, 448
LmnI GCTCC 1 cut(s) 383
LpnPI CCDG 5 cut(s) 67, 144, 248, 285, 351
Lsp1109I GCAGC 2 cut(s) 119, 130
LweI GCATC 3 cut(s) 76, 87, 430
MaeI CTAG 2 cut(s) 147, 462
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 165
MboII GAAGA 5 cut(s) 113, 168, 172, 233, 245
MluCI AATT 1 cut(s) 63
MlyI GAGTC 1 cut(s) 51
MnlI CCTC 6 cut(s) 47, 97, 106, 340, 344, 422
MspA1I CMGCKG 1 cut(s) 206
MwoI GCNNNNNNNGC 3 cut(s) 140, 251, 330
NcoI CCATGG 1 cut(s) 444
NdeI CATATG 1 cut(s) 34
NlaIII CATG 4 cut(s) 283, 365, 385, 448
NlaIV GGNNCC 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 2 cut(s) 109, 145
PleI GAGTC 1 cut(s) 51
PmaCI CACGTG 1 cut(s) 170
PmlI CACGTG 1 cut(s) 170
PpsI GAGTC 1 cut(s) 51
Ppu21I YACGTR 1 cut(s) 170
PspCI CACGTG 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 2 cut(s) 302, 404
PvuII CAGCTG 1 cut(s) 206
SatI GCNGC 2 cut(s) 108, 144
Sau96I GGNCC 2 cut(s) 302, 404
SchI GAGTC 1 cut(s) 51
SetI ASST 3 cut(s) 172, 201, 208
SfaNI GCATC 3 cut(s) 76, 87, 430
Sse9I AATT 1 cut(s) 63
SsiI CCGC 1 cut(s) 465
SspMI CTAG 2 cut(s) 147, 462
StyI CCWWGG 2 cut(s) 395, 444
TaiI ACGT 1 cut(s) 172
TasI AATT 1 cut(s) 63
TfiI GAWTC 1 cut(s) 173
TseFI GTSAC 1 cut(s) 165
TseI GCWGC 2 cut(s) 107, 143
Tsp45I GTSAC 1 cut(s) 165
TspDTI ATGAA 2 cut(s) 7, 350
XagI CCTNNNNNAGG 1 cut(s) 399
XspI CTAG 2 cut(s) 147, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.