pycom13g03200

protein phosphatase 2C 15

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
2143325 .. 2144436
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g03200.1

Sequence Viewer

Length: 633 bp
ATGGATGTTGGGGAGTTTATCGTTCCAATACCATATGTGAAACAAGTCAAGCTATCAAATGCCGGTGGGAGGCTTATAATTGCTTCAGATGGCATCTGGGATGCTATATCTTCCGAAATGGCAGCACAGTCTTGCCGTGGGTTGCCAGCTGAACTTGCTGCCAGACAAGTTGTGAAGGAGGCATTAAGGTCAAGGGGTCTAAAGGATGATACAACCTGCATAGTTGTTGACATAATCCCTCCCGATACTACGGTAGAGCCTTCAACTCCGCCGAAAAAGATTAACAAGTTTAGGACCCTGTTTTTCAGAAAGAAGTCGCGTGCTTCTGCTAATAAACTATCCAAGAAGCTATCGGCTGTGGGTATTGTGGAGGAGTTATTTGAAGAAGGCTCTGCCATGCTTGCTGAAAGGTTGGGCAGCGATGAGTGCACACCACAATCGACTACATCTGGGCTATTCATGTGTGCTGTATGCCAAGTTGACCTTGCACCGAGCGAGGGCATATCGGTTCACGCAGGTTCTATCTTCTCAACCAGTTCAAAGCCTTGGCAAGGGCCGTTCCTCTGTTCTGATTGTCGTAACAAGAAGGATGCCATGGAAGGAAAACGCCCTAGCGGAGTCAGAGTAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

211

Amino Acids

22.58

Weight (kDa)

8.68

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
Acc36I ACCTGC 2 cut(s) 224, 506
AccII CGCG 1 cut(s) 319
AciI CCGC 2 cut(s) 269, 615
AcuI CTGAAG 1 cut(s) 69
AfiI CCNNNNNNNGG 3 cut(s) 69, 497, 551
AgsI TTSAA 3 cut(s) 264, 383, 540
AluBI AGCT 3 cut(s) 52, 149, 349
AluI AGCT 3 cut(s) 52, 149, 349
Alw21I GWGCWC 1 cut(s) 431
Alw44I GTGCAC 1 cut(s) 427
AoxI GGCC 1 cut(s) 554
ApaLI GTGCAC 1 cut(s) 427
ApeKI GCWGC 3 cut(s) 122, 158, 417
AspS9I GGNCC 2 cut(s) 294, 554
AvaII GGWCC 1 cut(s) 294
BaeGI GKGCMC 1 cut(s) 431
BaeI ACNNNNGTAYC 2 cut(s) 237, 270
Bbv12I GWGCWC 1 cut(s) 431
BbvI GCAGC 3 cut(s) 134, 145, 429
BccI CCATC 1 cut(s) 83
BceAI ACGGC 2 cut(s) 120, 541
BfaI CTAG 1 cut(s) 612
BfuAI ACCTGC 2 cut(s) 224, 506
BisI GCNGC 3 cut(s) 123, 159, 418
BlsI GCNGC 3 cut(s) 124, 160, 419
Bme18I GGWCC 1 cut(s) 294
BmgT120I GGNCC 2 cut(s) 294, 554
BmiI GGNNCC 1 cut(s) 296
BmsI GCATC 3 cut(s) 91, 102, 580
BsaJI CCNNGG 3 cut(s) 136, 545, 594
BsaXI ACNNNNNCTCC 1 cut(s) 609
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 497, 551
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 534
BseDI CCNNGG 3 cut(s) 136, 545, 594
BseGI GGATG 4 cut(s) 10, 106, 211, 595
BseLI CCNNNNNNNGG 3 cut(s) 69, 497, 551
BseNI ACTGG 1 cut(s) 534
BseRI GAGGAG 1 cut(s) 386
BseSI GKGCMC 1 cut(s) 431
BseXI GCAGC 3 cut(s) 134, 145, 429
Bsh1236I CGCG 1 cut(s) 319
BshFI GGCC 1 cut(s) 556
BsiHKAI GWGCWC 1 cut(s) 431
BsiSI CCGG 1 cut(s) 63
BslI CCNNNNNNNGG 3 cut(s) 69, 497, 551
BsnI GGCC 1 cut(s) 556
Bsp1286I GDGCHC 1 cut(s) 431
Bsp19I CCATGG 1 cut(s) 594
BspACI CCGC 2 cut(s) 269, 615
BspANI GGCC 1 cut(s) 556
BspFNI CGCG 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 296
BspMI ACCTGC 2 cut(s) 224, 506
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 1 cut(s) 534
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 3 cut(s) 136, 545, 594
BssT1I CCWWGG 2 cut(s) 545, 594
Bst4CI ACNGT 2 cut(s) 129, 253
BstC8I GCNNGC 3 cut(s) 147, 321, 402
BstDSI CCRYGG 2 cut(s) 136, 594
BstENI CCTNNNNNAGG 1 cut(s) 549
BstF5I GGATG 4 cut(s) 10, 106, 211, 595
BstFNI CGCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 3 cut(s) 155, 401, 426
BstSLI GKGCMC 1 cut(s) 431
BstUI CGCG 1 cut(s) 319
BstV1I GCAGC 3 cut(s) 134, 145, 429
BsuRI GGCC 1 cut(s) 556
BtgI CCRYGG 2 cut(s) 136, 594
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 4 cut(s) 10, 106, 211, 595
BveI ACCTGC 2 cut(s) 224, 506
Cac8I GCNNGC 3 cut(s) 147, 321, 402
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 2 cut(s) 294, 554
CviAII CATG 3 cut(s) 397, 460, 595
EciI GGCGGA 1 cut(s) 258
Eco130I CCWWGG 2 cut(s) 545, 594
Eco47I GGWCC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 69
EcoNI CCTNNNNNAGG 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 294
EcoT14I CCWWGG 2 cut(s) 545, 594
ErhI CCWWGG 2 cut(s) 545, 594
FaeI CATG 3 cut(s) 400, 463, 598
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FatI CATG 3 cut(s) 396, 459, 594
FauNDI CATATG 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 123, 159, 418
FokI GGATG 4 cut(s) 17, 113, 218, 602
Fsp4HI GCNGC 3 cut(s) 123, 159, 418
FspBI CTAG 1 cut(s) 612
GluI GCNGC 3 cut(s) 123, 159, 418
HaeIII GGCC 1 cut(s) 556
HapII CCGG 1 cut(s) 63
Hin1II CATG 3 cut(s) 400, 463, 598
HincII GTYRAC 2 cut(s) 229, 481
HindII GTYRAC 2 cut(s) 229, 481
HinfI GANTC 1 cut(s) 618
HpaII CCGG 1 cut(s) 63
Hpy166II GTNNAC 4 cut(s) 229, 429, 481, 511
Hpy188I TCNGA 5 cut(s) 88, 115, 308, 571, 623
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 4 cut(s) 229, 429, 481, 511
HpyAV CCTTC 5 cut(s) 169, 270, 380, 580, 593
HpyCH4III ACNGT 2 cut(s) 129, 253
HpyCH4V TGCA 3 cut(s) 219, 429, 488
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 401, 426
Hsp92II CATG 3 cut(s) 400, 463, 598
LpnPI CCDG 9 cut(s) 76, 82, 159, 175, 229, 311, 435, 501, 547
Lsp1109I GCAGC 3 cut(s) 134, 145, 429
LweI GCATC 3 cut(s) 91, 102, 580
MaeI CTAG 1 cut(s) 612
MaeIII GTNAC 1 cut(s) 578
MboII GAAGA 3 cut(s) 102, 395, 517
MhlI GDGCHC 1 cut(s) 431
MluCI AATT 1 cut(s) 78
MlyI GAGTC 1 cut(s) 627
MnlI CCTC 6 cut(s) 63, 172, 249, 364, 490, 572
MseI TTAA 2 cut(s) 185, 282
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 63
MvnI CGCG 1 cut(s) 319
MwoI GCNNNNNNNGC 3 cut(s) 155, 401, 426
NcoI CCATGG 1 cut(s) 594
NdeI CATATG 1 cut(s) 34
NlaIII CATG 3 cut(s) 400, 463, 598
NlaIV GGNNCC 1 cut(s) 296
PkrI GCNGC 3 cut(s) 124, 160, 419
PleI GAGTC 1 cut(s) 626
PpsI GAGTC 1 cut(s) 626
PpuMI RGGWCCY 1 cut(s) 294
PsiI TTATAA 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 296
PspPI GGNCC 2 cut(s) 294, 554
PspPPI RGGWCCY 1 cut(s) 294
PvuII CAGCTG 1 cut(s) 149
SaqAI TTAA 2 cut(s) 185, 282
SatI GCNGC 3 cut(s) 123, 159, 418
Sau96I GGNCC 2 cut(s) 294, 554
SchI GAGTC 1 cut(s) 627
SduI GDGCHC 1 cut(s) 431
SetI ASST 8 cut(s) 54, 151, 191, 218, 351, 413, 486, 520
SfaNI GCATC 3 cut(s) 91, 102, 580
SinI GGWCC 1 cut(s) 294
Sse9I AATT 1 cut(s) 78
SsiI CCGC 2 cut(s) 269, 615
SspMI CTAG 1 cut(s) 612
StyI CCWWGG 2 cut(s) 545, 594
TaaI ACNGT 2 cut(s) 129, 253
TaqI TCGA 1 cut(s) 440
TasI AATT 1 cut(s) 78
Tru1I TTAA 2 cut(s) 185, 282
Tru9I TTAA 2 cut(s) 185, 282
TseI GCWGC 3 cut(s) 122, 158, 417
TspDTI ATGAA 1 cut(s) 448
VneI GTGCAC 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 294
XagI CCTNNNNNAGG 1 cut(s) 549
XspI CTAG 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.