Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007477.1

Orthogroup ID

OG0002720

Physical Location & Seq

Genomic Coordinates Reverse (-)

9178 .. 10887

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007477.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggcatctgggatgccctatcctcagaagaggcagcaaaatcttgccgtgggaggctttaaggtcaatggtttaaaggatgatacaacctgtatagttgttgacataatccctcctgataactcggtacagcctacaacttccctaaaaaagcagaacaagctgagggccctgttgttcaggaagaagtcacgtgattcttctcataaactatccaagaagctatcagctgtgggtatcgtggaagaactatttgaagaaggctctgccacgcttgctgaaaggctgggcaatgatgagtgcacagcacaatcaacatcatctgggctgtttatgtgtgctgtatgccaagttggccttgcaccgagtgagggtatatctgttcatgctggttccattttctccatgagttcaaagccttggcaagggcctttcctctgttctgattgtcgaaataagaaggatgccatggaaggaaaacgccctagcggaccttcaaatcccagaaaccaccgccgcccaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

175

Amino Acids

18.95

Weight (kDa)

9.45

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68410 AT1G68410 AT1G68410 AT1G68410
fragaria_vesca	FvH4_4g26880 FvH4_4g26880 FvH4_4g26880
malus_domestica	MD13G1036500.v1.1 MD13G1037200.v1.1 MD13G1037600.v1.1 MD16G1039100.v1.1
prunus_persica	Prupe.1G315600_v2.0.a1
pyrus_communis	pycom13g03190 pycom13g03200 pycom16g03350 pycom16g03360
rosa_chinensis	RchiOBHm_Chr4g0434641 RchiOBHm_Chr4g0434671
rosa_laevigata	RLG00000006658 RLG00000006660
rosa_multiflora	Rmu_co8077860.1_g000001 Rmu_sc0001105.1_g000001 Rmu_sc0007477.1_g000003 Rmu_sc0008439.1_g000010 Rmu_sc0023175.1_g000005
rosa_roxburghii	Rroxscaffold_5G00375880 Rroxscaffold_5G00375900
rosa_rugosa	Rorug04G0277400 Rorug04G0277400 Rorug04G0277500
rosa_samantha	Rh4AG333300 Rh4AG333800 Rh4BG341500 Rh4CG356400
rosa_wichuraiana	Rw4G028920 Rw4G028940 Rw4G029050 Rw4G029070 Rw4G029090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	489, 514, 517
AcvI	CACGTG	1 cut(s)	194
AdeI	CACNNNGTG	1 cut(s)	368
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	2 cut(s)	371, 425
AgsI	TTSAA	3 cut(s)	257, 414, 498
AluBI	AGCT	3 cut(s)	163, 223, 230
AluI	AGCT	3 cut(s)	163, 223, 230
Alw21I	GWGCWC	1 cut(s)	305
Alw44I	GTGCAC	1 cut(s)	301
AoxI	GGCC	3 cut(s)	168, 355, 428
ApaI	GGGCCC	1 cut(s)	172
ApaLI	GTGCAC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	34
AspS9I	GGNCC	4 cut(s)	168, 169, 428, 491
AvaII	GGWCC	1 cut(s)	491
BaeGI	GKGCMC	2 cut(s)	172, 305
BanII	GRGCYC	1 cut(s)	172
BbrPI	CACGTG	1 cut(s)	194
Bbv12I	GWGCWC	1 cut(s)	305
BbvCI	CCTCAGC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	486
BglI	GCCNNNNNGGC	1 cut(s)	354
BisI	GCNGC	2 cut(s)	35, 517
BlsI	GCNGC	2 cut(s)	36, 518
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	4 cut(s)	168, 169, 428, 491
BmiI	GGNNCC	2 cut(s)	170, 394
BmsI	GCATC	3 cut(s)	3, 14, 454
Bpu10I	CCTNAGC	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	194
BsaJI	CCNNGG	3 cut(s)	48, 419, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 425
Bse3DI	GCAATG	1 cut(s)	298
BseDI	CCNNGG	3 cut(s)	48, 419, 468
BseGI	GGATG	3 cut(s)	18, 85, 469
BseLI	CCNNNNNNNGG	2 cut(s)	371, 425
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	2 cut(s)	38, 155
BseSI	GKGCMC	2 cut(s)	172, 305
BseXI	GCAGC	1 cut(s)	46
BseYI	CCCAGC	1 cut(s)	286
BshFI	GGCC	3 cut(s)	170, 357, 430
BsiHKAI	GWGCWC	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	371, 425
BsnI	GGCC	3 cut(s)	170, 357, 430
Bsp120I	GGGCCC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	172, 305
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	3 cut(s)	489, 514, 517
BspANI	GGCC	3 cut(s)	170, 357, 430
BspCNI	CTCAG	2 cut(s)	37, 156
BspLI	GGNNCC	2 cut(s)	170, 394
BsrDI	GCAATG	1 cut(s)	298
BssECI	CCNNGG	3 cut(s)	48, 419, 468
BssT1I	CCWWGG	2 cut(s)	419, 468
Bst6I	CTCTTC	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	24, 164
BstDSI	CCRYGG	2 cut(s)	48, 468
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstF5I	GGATG	3 cut(s)	18, 85, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 275, 354
BstSLI	GKGCMC	2 cut(s)	172, 305
BstV1I	GCAGC	1 cut(s)	46
BsuRI	GGCC	3 cut(s)	170, 357, 430
BtgI	CCRYGG	2 cut(s)	48, 468
BtsCI	GGATG	3 cut(s)	18, 85, 469
Cac8I	GCNNGC	1 cut(s)	276
Cfr13I	GGNCC	4 cut(s)	168, 169, 428, 491
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	3 cut(s)	386, 406, 469
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	2 cut(s)	24, 164
DraI	TTTAAA	1 cut(s)	75
DraIII	CACNNNGTG	1 cut(s)	368
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco130I	CCWWGG	2 cut(s)	419, 468
Eco24I	GRGCYC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	491
Eco72I	CACGTG	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoO109I	RGGNCCY	3 cut(s)	168, 169, 428
EcoT14I	CCWWGG	2 cut(s)	419, 468
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	2 cut(s)	419, 468
FaeI	CATG	3 cut(s)	389, 409, 472
FaiI	YATR	9 cut(s)	95, 107, 207, 335, 346, 377, 387, 407, 470
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FatI	CATG	3 cut(s)	385, 405, 468
Fnu4HI	GCNGC	2 cut(s)	35, 517
FokI	GGATG	3 cut(s)	25, 92, 476
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	2 cut(s)	35, 517
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	2 cut(s)	35, 517
GsaI	CCCAGC	1 cut(s)	290
HaeIII	GGCC	3 cut(s)	170, 357, 430
Hin1II	CATG	3 cut(s)	389, 409, 472
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	103, 303
Hpy188I	TCNGA	2 cut(s)	27, 445
Hpy188III	TCNNGA	2 cut(s)	116, 181
Hpy8I	GTNNAC	2 cut(s)	103, 303
HpyAV	CCTTC	4 cut(s)	254, 454, 467, 504
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	2 cut(s)	303, 362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 275, 354
HpyF3I	CTNAG	2 cut(s)	24, 164
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	3 cut(s)	389, 409, 472
LpnPI	CCDG	8 cut(s)	103, 129, 166, 185, 272, 309, 375, 517
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	3 cut(s)	3, 14, 454
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	189
MboII	GAAGA	5 cut(s)	40, 192, 196, 257, 269
MhlI	GDGCHC	2 cut(s)	172, 305
MnlI	CCTC	7 cut(s)	24, 33, 47, 123, 159, 364, 446
MseI	TTAA	2 cut(s)	60, 74
MspA1I	CMGCKG	1 cut(s)	230
MwoI	GCNNNNNNNGC	3 cut(s)	160, 275, 354
NcoI	CCATGG	1 cut(s)	468
NlaIII	CATG	3 cut(s)	389, 409, 472
NlaIV	GGNNCC	2 cut(s)	170, 394
NmuCI	GTSAC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	36, 518
PmaCI	CACGTG	1 cut(s)	194
PmlI	CACGTG	1 cut(s)	194
Ppu21I	YACGTR	1 cut(s)	194
PspCI	CACGTG	1 cut(s)	194
PspFI	CCCAGC	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	170, 394
PspOMI	GGGCCC	1 cut(s)	168
PspPI	GGNCC	4 cut(s)	168, 169, 428, 491
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	60, 74
SatI	GCNGC	2 cut(s)	35, 517
Sau96I	GGNCC	4 cut(s)	168, 169, 428, 491
SduI	GDGCHC	2 cut(s)	172, 305
SetI	ASST	8 cut(s)	66, 92, 165, 196, 225, 232, 496, 526
SfaNI	GCATC	3 cut(s)	3, 14, 454
SinI	GGWCC	1 cut(s)	491
SsiI	CCGC	3 cut(s)	489, 514, 517
SspMI	CTAG	1 cut(s)	486
StyI	CCWWGG	2 cut(s)	419, 468
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	1 cut(s)	451
TauI	GCSGC	1 cut(s)	519
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	60, 74
Tru9I	TTAA	2 cut(s)	60, 74
TseFI	GTSAC	1 cut(s)	189
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	1 cut(s)	374
VneI	GTGCAC	1 cut(s)	301
VpaK11BI	GGWCC	1 cut(s)	491
XagI	CCTNNNNNAGG	1 cut(s)	423
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.