Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002720

Physical Location & Seq

Genomic Coordinates Forward (+)

2142005 .. 2142882

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03190.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCGTCTGGAGATAGGCGTCAGCATCATAATATGGTGCCTCTGGCTGCATTGATCAGCAGAGAGCTGAAGAGTGAGAAGATGGAGAAGCCAACTGTCAGATATGGGCATGCGGCTCAATCCAGGAAAGGGGAGGATTATTTCCTGATCAAGACTGATGGTCAGCGAGTACCCGGGAATTCTTCATCAGCATTCACCGCATTTGCGATCTTTGATGGGCACAACGGAAATGCAGCAGCAGTATATACAAGGGAGAATTTGTTAAAGCATGTGTTGGGTGCTATTCCCCGTGGGCTAGGAAGGGAGGAGTGGCTCCAAGCTTTACCTCGAGCCTTGGTTGCTGGGTTTGTGAAGACTGATAAGGATTTCCAGAGCAGAGGTGTGAAACTTCTGGAACAACAGCTACCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

138

Amino Acids

15.2

Weight (kDa)

9.84

Isoelectric Point (pI)

38.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68410 AT1G68410 AT1G68410 AT1G68410
fragaria_vesca	FvH4_4g26880 FvH4_4g26880 FvH4_4g26880
malus_domestica	MD13G1036500.v1.1 MD13G1037200.v1.1 MD13G1037600.v1.1 MD16G1039100.v1.1
prunus_persica	Prupe.1G315600_v2.0.a1
pyrus_communis	pycom13g03190 pycom13g03200 pycom16g03350 pycom16g03360
rosa_chinensis	RchiOBHm_Chr4g0434641 RchiOBHm_Chr4g0434671
rosa_laevigata	RLG00000006658 RLG00000006660
rosa_multiflora	Rmu_co8077860.1_g000001 Rmu_sc0001105.1_g000001 Rmu_sc0007477.1_g000003 Rmu_sc0008439.1_g000010 Rmu_sc0023175.1_g000005
rosa_roxburghii	Rroxscaffold_5G00375880 Rroxscaffold_5G00375900
rosa_rugosa	Rorug04G0277400 Rorug04G0277400 Rorug04G0277500
rosa_samantha	Rh4AG333300 Rh4AG333800 Rh4BG341500 Rh4CG356400
rosa_wichuraiana	Rw4G028920 Rw4G028940 Rw4G029050 Rw4G029070 Rw4G029090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AciI	CCGC	2 cut(s)	113, 198
AcsI	RAATTY	2 cut(s)	178, 256
AcuI	CTGAAG	1 cut(s)	89
AcyI	GRCGYC	2 cut(s)	5, 19
AfaI	GTAC	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	129
AhdI	GACNNNNNGTC	1 cut(s)	159
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	3 cut(s)	67, 320, 403
AluI	AGCT	3 cut(s)	67, 320, 403
Ama87I	CYCGRG	2 cut(s)	173, 327
ApeKI	GCWGC	3 cut(s)	47, 233, 236
ApoI	RAATTY	2 cut(s)	178, 256
AsuC2I	CCSGG	2 cut(s)	174, 175
AsuHPI	GGTGA	1 cut(s)	187
AvaI	CYCGRG	2 cut(s)	173, 327
BaeGI	GKGCMC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	359
BbvI	GCAGC	3 cut(s)	34, 245, 248
BccI	CCATC	3 cut(s)	76, 152, 209
BciT130I	CCWGG	1 cut(s)	124
BclI	TGATCA	2 cut(s)	54, 147
BcnI	CCSGG	2 cut(s)	174, 175
BfaI	CTAG	1 cut(s)	296
BisI	GCNGC	4 cut(s)	48, 114, 234, 237
BlsI	GCNGC	4 cut(s)	49, 115, 235, 238
Bme1390I	CCNGG	3 cut(s)	124, 174, 175
BmeRI	GACNNNNNGTC	1 cut(s)	159
BmeT110I	CYCGRG	2 cut(s)	173, 327
BmiI	GGNNCC	2 cut(s)	39, 314
BmrFI	CCNGG	3 cut(s)	124, 174, 175
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	1 cut(s)	359
BpmI	CTGGAG	1 cut(s)	30
BpuMI	CCSGG	2 cut(s)	174, 175
BsaHI	GRCGYC	2 cut(s)	5, 19
BsaJI	CCNNGG	3 cut(s)	173, 289, 333
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	3 cut(s)	173, 289, 333
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	320
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	3 cut(s)	34, 245, 248
BseYI	CCCAGC	1 cut(s)	341
BshNI	GGYRCC	1 cut(s)	37
BsiHKCI	CYCGRG	2 cut(s)	173, 327
BsiSI	CCGG	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	191
BsoBI	CYCGRG	2 cut(s)	173, 327
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	54, 147, 207
BspACI	CCGC	2 cut(s)	113, 198
BspLI	GGNNCC	2 cut(s)	39, 314
BspT107I	GGYRCC	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	173, 289, 333
BssMI	GATC	3 cut(s)	54, 147, 207
BssNI	GRCGYC	2 cut(s)	5, 19
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	65
BstACI	GRCGYC	2 cut(s)	5, 19
BstC8I	GCNNGC	1 cut(s)	111
BstDSI	CCRYGG	1 cut(s)	289
BstKTI	GATC	3 cut(s)	57, 150, 210
BstMBI	GATC	3 cut(s)	54, 147, 207
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 338
BstNI	CCWGG	1 cut(s)	124
BstNSI	RCATGY	2 cut(s)	113, 272
BstSCI	CCNGG	3 cut(s)	122, 172, 173
BstSLI	GKGCMC	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	34, 245, 248
BstV2I	GAAGAC	1 cut(s)	359
BtgI	CCRYGG	1 cut(s)	289
Cac8I	GCNNGC	1 cut(s)	111
Cfr9I	CCCGGG	1 cut(s)	173
CseI	GACGC	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	170
CviAII	CATG	2 cut(s)	110, 269
CviJI	RGCY	9 cut(s)	47, 67, 91, 116, 295, 313, 320, 332, 403
CviKI_1	RGCY	9 cut(s)	47, 67, 91, 116, 295, 313, 320, 332, 403
CviQI	GTAC	1 cut(s)	170
DpnI	GATC	3 cut(s)	56, 149, 209
DpnII	GATC	3 cut(s)	54, 147, 207
DriI	GACNNNNNGTC	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	65
Eam1105I	GACNNNNNGTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	89
Eco88I	CYCGRG	2 cut(s)	173, 327
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	113, 272
FaiI	YATR	7 cut(s)	30, 35, 105, 111, 244, 246, 270
FatI	CATG	2 cut(s)	109, 268
FbaI	TGATCA	2 cut(s)	54, 147
Fnu4HI	GCNGC	4 cut(s)	48, 114, 234, 237
Fsp4HI	GCNGC	4 cut(s)	48, 114, 234, 237
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	4 cut(s)	48, 114, 234, 237
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	30
HapII	CCGG	1 cut(s)	174
HgaI	GACGC	1 cut(s)	8
Hin1I	GRCGYC	2 cut(s)	5, 19
Hin1II	CATG	2 cut(s)	113, 272
HindIII	AAGCTT	1 cut(s)	318
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	101
Hpy188III	TCNNGA	5 cut(s)	9, 145, 151, 370, 392
HpyAV	CCTTC	1 cut(s)	294
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	50, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 338
Hsp92I	GRCGYC	2 cut(s)	5, 19
Hsp92II	CATG	2 cut(s)	113, 272
Ksp22I	TGATCA	2 cut(s)	54, 147
Kzo9I	GATC	3 cut(s)	54, 147, 207
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	8 cut(s)	29, 109, 136, 158, 187, 327, 377, 383
Lsp1109I	GCAGC	3 cut(s)	34, 245, 248
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	296
MalI	GATC	3 cut(s)	56, 149, 209
MboI	GATC	3 cut(s)	54, 147, 207
MboII	GAAGA	4 cut(s)	82, 91, 174, 364
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	2 cut(s)	178, 256
MnlI	CCTC	5 cut(s)	51, 127, 298, 336, 371
MseI	TTAA	1 cut(s)	263
MspI	CCGG	1 cut(s)	174
MspR9I	CCNGG	3 cut(s)	124, 174, 175
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	197, 338
NciI	CCSGG	2 cut(s)	174, 175
NdeII	GATC	3 cut(s)	54, 147, 207
NlaIII	CATG	2 cut(s)	113, 272
NlaIV	GGNNCC	2 cut(s)	39, 314
NspI	RCATGY	2 cut(s)	113, 272
PaeI	GCATGC	1 cut(s)	113
PaeR7I	CTCGAG	1 cut(s)	327
PctI	GAATGC	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	122
PkrI	GCNGC	4 cut(s)	49, 115, 235, 238
Psp6I	CCWGG	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	2 cut(s)	39, 314
PspXI	VCTCGAGB	1 cut(s)	327
PsrI	GAACNNNNNNTAC	1 cut(s)	387
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	4 cut(s)	48, 114, 234, 237
Sau3AI	GATC	3 cut(s)	54, 147, 207
ScrFI	CCNGG	3 cut(s)	124, 174, 175
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	6 cut(s)	69, 322, 328, 382, 405, 409
SfaNI	GCATC	1 cut(s)	34
Sfr274I	CTCGAG	1 cut(s)	327
SlaI	CTCGAG	1 cut(s)	327
SmaI	CCCGGG	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	2 cut(s)	178, 256
SsiI	CCGC	2 cut(s)	113, 198
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	3 cut(s)	122, 172, 173
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	1 cut(s)	328
TasI	AATT	2 cut(s)	178, 256
TauI	GCSGC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TseI	GCWGC	3 cut(s)	47, 233, 236
TspDTI	ATGAA	1 cut(s)	174
TspGWI	ACGGA	1 cut(s)	240
TspMI	CCCGGG	1 cut(s)	173
XapI	RAATTY	2 cut(s)	178, 256
XceI	RCATGY	2 cut(s)	113, 272
XhoI	CTCGAG	1 cut(s)	327
XmaI	CCCGGG	1 cut(s)	173
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.