Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002720

Physical Location & Seq

Genomic Coordinates Forward (+)

2576597 .. 2577706

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1037600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGATGTTGGGGAGTTTATAGTTCCAATACCATATGTGAAACAAGTCAAGTCTTGCCGTGGGTTGCCAGCTGAACTTGCTGCTAGACAAGTTGTGAAGGTCAAGGGTCTAAAGGATGATACAACCTGCATAGTTGTTGACATAATCCCTCCTGATACTACGGTAGAGCCCTCAACTCCGCCAAAAAAGATTAACAAGTTTAGGACCCTTTTTTTCAGAAAGAAATCGCGTGCTTCTGCTAATAAACTATCCAAGAAGCTATCGGCTGTGGGTATTGTTGAGGAGTTATTTGAAGAAGGGTCTGCTATGCTTGCTGAAAGGTTGGGCAGCGATGAGTGCACATCACAATCAACATCTGGGCTGTTCATGTGTGCTGTATGCCAAGTTGACCTTGCACCGAGCGAGGGCATATCGGTTCACGCGGGTTCTATCTTCTCAACCAGTTCAAAGCCTTGGCAAGGGCCGTTCCTCTGTTCTGATTGTCGTAACAAGAAGGATGCCATGGAAGGAAAACGCCCTAGCGGAGTCAGAGTAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

180

Amino Acids

19.35

Weight (kDa)

8.98

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68410 AT1G68410 AT1G68410 AT1G68410
fragaria_vesca	FvH4_4g26880 FvH4_4g26880 FvH4_4g26880
malus_domestica	MD13G1036500.v1.1 MD13G1037200.v1.1 MD13G1037600.v1.1 MD16G1039100.v1.1
prunus_persica	Prupe.1G315600_v2.0.a1
pyrus_communis	pycom13g03190 pycom13g03200 pycom16g03350 pycom16g03360
rosa_chinensis	RchiOBHm_Chr4g0434641 RchiOBHm_Chr4g0434671
rosa_laevigata	RLG00000006658 RLG00000006660
rosa_multiflora	Rmu_co8077860.1_g000001 Rmu_sc0001105.1_g000001 Rmu_sc0007477.1_g000003 Rmu_sc0008439.1_g000010 Rmu_sc0023175.1_g000005
rosa_roxburghii	Rroxscaffold_5G00375880 Rroxscaffold_5G00375900
rosa_rugosa	Rorug04G0277400 Rorug04G0277400 Rorug04G0277500
rosa_samantha	Rh4AG333300 Rh4AG333800 Rh4BG341500 Rh4CG356400
rosa_wichuraiana	Rw4G028920 Rw4G028940 Rw4G029050 Rw4G029070 Rw4G029090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	134
AccII	CGCG	2 cut(s)	229, 422
AciI	CCGC	3 cut(s)	179, 422, 522
AfiI	CCNNNNNNNGG	2 cut(s)	404, 458
AgsI	TTSAA	2 cut(s)	293, 447
AluBI	AGCT	2 cut(s)	71, 259
AluI	AGCT	2 cut(s)	71, 259
Alw21I	GWGCWC	1 cut(s)	341
Alw44I	GTGCAC	1 cut(s)	337
AoxI	GGCC	1 cut(s)	461
ApaLI	GTGCAC	1 cut(s)	337
ApeKI	GCWGC	2 cut(s)	80, 327
AspS9I	GGNCC	2 cut(s)	204, 461
AvaII	GGWCC	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	341
BaeI	ACNNNNGTAYC	2 cut(s)	147, 180
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	2 cut(s)	67, 339
BceAI	ACGGC	2 cut(s)	42, 448
BfaI	CTAG	2 cut(s)	84, 519
BfuAI	ACCTGC	1 cut(s)	134
BisI	GCNGC	2 cut(s)	81, 328
BlsI	GCNGC	2 cut(s)	82, 329
Bme18I	GGWCC	1 cut(s)	204
BmgT120I	GGNCC	2 cut(s)	204, 461
BmiI	GGNNCC	1 cut(s)	206
BmsI	GCATC	1 cut(s)	487
BsaJI	CCNNGG	3 cut(s)	58, 452, 501
BsaXI	ACNNNNNCTCC	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 458
Bse1I	ACTGG	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	58, 452, 501
BseGI	GGATG	3 cut(s)	10, 121, 502
BseLI	CCNNNNNNNGG	2 cut(s)	404, 458
BseNI	ACTGG	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	296
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	67, 339
Bsh1236I	CGCG	2 cut(s)	229, 422
BshFI	GGCC	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	341
BslI	CCNNNNNNNGG	2 cut(s)	404, 458
BsnI	GGCC	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	171, 341
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	3 cut(s)	179, 422, 522
BspANI	GGCC	1 cut(s)	463
BspFNI	CGCG	2 cut(s)	229, 422
BspLI	GGNNCC	1 cut(s)	206
BspMI	ACCTGC	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	441
BssECI	CCNNGG	3 cut(s)	58, 452, 501
BssT1I	CCWWGG	2 cut(s)	452, 501
Bst4CI	ACNGT	1 cut(s)	163
BstC8I	GCNNGC	3 cut(s)	69, 231, 312
BstDSI	CCRYGG	2 cut(s)	58, 501
BstENI	CCTNNNNNAGG	1 cut(s)	456
BstF5I	GGATG	3 cut(s)	10, 121, 502
BstFNI	CGCG	2 cut(s)	229, 422
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 311, 336
BstSLI	GKGCMC	1 cut(s)	341
BstUI	CGCG	2 cut(s)	229, 422
BstV1I	GCAGC	2 cut(s)	67, 339
BsuRI	GGCC	1 cut(s)	463
BtgI	CCRYGG	2 cut(s)	58, 501
BtgZI	GCGATG	1 cut(s)	345
BtsCI	GGATG	3 cut(s)	10, 121, 502
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	3 cut(s)	69, 231, 312
Cfr13I	GGNCC	2 cut(s)	204, 461
CviAII	CATG	2 cut(s)	367, 502
CviJI	RGCY	7 cut(s)	71, 169, 259, 266, 361, 451, 463
CviKI_1	RGCY	7 cut(s)	71, 169, 259, 266, 361, 451, 463
EciI	GGCGGA	1 cut(s)	168
Eco130I	CCWWGG	2 cut(s)	452, 501
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	204
EcoNI	CCTNNNNNAGG	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	204
EcoT14I	CCWWGG	2 cut(s)	452, 501
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	2 cut(s)	452, 501
FaeI	CATG	2 cut(s)	370, 505
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FatI	CATG	2 cut(s)	366, 501
FauI	CCCGC	1 cut(s)	415
FauNDI	CATATG	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	81, 328
FokI	GGATG	3 cut(s)	17, 128, 509
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	2 cut(s)	81, 328
FspBI	CTAG	2 cut(s)	84, 519
GluI	GCNGC	2 cut(s)	81, 328
HaeIII	GGCC	1 cut(s)	463
Hin1II	CATG	2 cut(s)	370, 505
HincII	GTYRAC	2 cut(s)	139, 388
HindII	GTYRAC	2 cut(s)	139, 388
HinfI	GANTC	1 cut(s)	525
Hpy166II	GTNNAC	4 cut(s)	139, 339, 388, 418
Hpy188I	TCNGA	3 cut(s)	218, 478, 530
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	4 cut(s)	139, 339, 388, 418
HpyAV	CCTTC	4 cut(s)	91, 290, 487, 500
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	3 cut(s)	129, 339, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 311, 336
Hsp92II	CATG	2 cut(s)	370, 505
LpnPI	CCDG	5 cut(s)	81, 139, 165, 342, 454
Lsp1109I	GCAGC	2 cut(s)	67, 339
LweI	GCATC	1 cut(s)	487
MaeI	CTAG	2 cut(s)	84, 519
MaeIII	GTNAC	1 cut(s)	485
MboII	GAAGA	2 cut(s)	305, 424
MhlI	GDGCHC	2 cut(s)	171, 341
MlyI	GAGTC	1 cut(s)	534
MnlI	CCTC	5 cut(s)	159, 181, 274, 397, 479
MseI	TTAA	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	71
MvnI	CGCG	2 cut(s)	229, 422
MwoI	GCNNNNNNNGC	3 cut(s)	77, 311, 336
NcoI	CCATGG	1 cut(s)	501
NdeI	CATATG	1 cut(s)	34
NlaIII	CATG	2 cut(s)	370, 505
NlaIV	GGNNCC	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	82, 329
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
PpuMI	RGGWCCY	1 cut(s)	204
Psp5II	RGGWCCY	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	2 cut(s)	204, 461
PspPPI	RGGWCCY	1 cut(s)	204
PvuII	CAGCTG	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	2 cut(s)	81, 328
Sau96I	GGNCC	2 cut(s)	204, 461
SchI	GAGTC	1 cut(s)	534
SduI	GDGCHC	2 cut(s)	171, 341
SetI	ASST	6 cut(s)	73, 102, 128, 261, 323, 393
SfaNI	GCATC	1 cut(s)	487
SinI	GGWCC	1 cut(s)	204
SsiI	CCGC	3 cut(s)	179, 422, 522
SspMI	CTAG	2 cut(s)	84, 519
StyI	CCWWGG	2 cut(s)	452, 501
TaaI	ACNGT	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseI	GCWGC	2 cut(s)	80, 327
TspDTI	ATGAA	1 cut(s)	355
VneI	GTGCAC	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	204
XagI	CCTNNNNNAGG	1 cut(s)	456
XspI	CTAG	2 cut(s)	84, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.