Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023175.1

Orthogroup ID

OG0002720

Physical Location & Seq

Genomic Coordinates Reverse (-)

25583 .. 27196

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023175.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atggggtctacagaagggaggcgtaatcatcataatctggtgcctcttgctgcattgatcagcagagagatgaagaatgagaagatggaaaaaccgactgtcagatacgggcatgcggctcaatccaggaaaggggaggattattttctgatcaagactgatggtcagcgagtgcctggaaattcttcatcaacattttctgcatttgcgatctttgacgggcacaatggaaacgcagcagccatatatacaagggagaacttgttaaatcatgtgatgggtgctattcccagggggctaggaagggaggagtggctccaagccttacctcgggccttggttgcagggtttgtgaaggctgataaggatttccaaagtagaggagaaacttctggaacaacagctactgttgtgatagttgatggatggactgtgacagtagcatcagtaggagactcccgttgtatcttagatactcagggtggtgcggtttccactttaactgttgatcatagacttgaagagaatgtagaagagagggagcgtgttgctgcaagtggcggggaagtagggaggttgagcattgttgggggaggtttatgcctgtctaggtcgattggagacatggatgttggggagttcatagttccaataccatatgtgaaacaagtcaagctatcaaatagaggagggaggctcataattgcttcttatggcatctgggatgccctatcctcagaagaggcagcaaaatcttgccgtgggttgcccgctgaacttgctgctagacaagtagtgaaggaggctttaaggtcaaggggtttaaaggatgacgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

279

Amino Acids

30.03

Weight (kDa)

7.76

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68410 AT1G68410 AT1G68410 AT1G68410
fragaria_vesca	FvH4_4g26880 FvH4_4g26880 FvH4_4g26880
malus_domestica	MD13G1036500.v1.1 MD13G1037200.v1.1 MD13G1037600.v1.1 MD16G1039100.v1.1
prunus_persica	Prupe.1G315600_v2.0.a1
pyrus_communis	pycom13g03190 pycom13g03200 pycom16g03350 pycom16g03360
rosa_chinensis	RchiOBHm_Chr4g0434641 RchiOBHm_Chr4g0434671
rosa_laevigata	RLG00000006658 RLG00000006660
rosa_multiflora	Rmu_co8077860.1_g000001 Rmu_sc0001105.1_g000001 Rmu_sc0007477.1_g000003 Rmu_sc0008439.1_g000010 Rmu_sc0023175.1_g000005
rosa_roxburghii	Rroxscaffold_5G00375880 Rroxscaffold_5G00375900
rosa_rugosa	Rorug04G0277400 Rorug04G0277400 Rorug04G0277500
rosa_samantha	Rh4AG333300 Rh4AG333800 Rh4BG341500 Rh4CG356400
rosa_wichuraiana	Rw4G028920 Rw4G028940 Rw4G029050 Rw4G029070 Rw4G029090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	8
AciI	CCGC	4 cut(s)	116, 488, 561, 771
AcsI	RAATTY	1 cut(s)	181
AfiI	CCNNNNNNNGG	2 cut(s)	132, 330
AgsI	TTSAA	1 cut(s)	521
AhdI	GACNNNNNGTC	1 cut(s)	162
AjnI	CCWGG	3 cut(s)	125, 175, 290
AluBI	AGCT	2 cut(s)	404, 676
AluI	AGCT	2 cut(s)	404, 676
Alw26I	GTCTC	2 cut(s)	447, 615
AlwNI	CAGNNNCTG	1 cut(s)	407
Ama87I	CYCGRG	1 cut(s)	330
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	6 cut(s)	50, 236, 239, 551, 746, 782
ApoI	RAATTY	1 cut(s)	181
Asp700I	GAANNNNTTC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	333
AvaI	CYCGRG	1 cut(s)	330
BaeGI	GKGCMC	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	40
BbvI	GCAGC	6 cut(s)	37, 248, 251, 538, 758, 769
BccI	CCATC	5 cut(s)	79, 155, 271, 416, 420
BceAI	ACGGC	1 cut(s)	744
BciT130I	CCWGG	3 cut(s)	127, 177, 292
BclI	TGATCA	3 cut(s)	57, 150, 508
BcoDI	GTCTC	2 cut(s)	447, 615
BfaI	CTAG	3 cut(s)	299, 609, 786
BfmI	CTRYAG	1 cut(s)	9
BisI	GCNGC	7 cut(s)	51, 117, 237, 240, 552, 747, 783
BlsI	GCNGC	7 cut(s)	52, 118, 238, 241, 553, 748, 784
Bme1390I	CCNGG	3 cut(s)	127, 177, 292
BmeRI	GACNNNNNGTC	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	330
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	42, 317
BmrFI	CCNGG	3 cut(s)	127, 177, 292
BmsI	GCATC	3 cut(s)	452, 715, 726
BplI	GAGNNNNNCTC	2 cut(s)	681, 713
BsaJI	CCNNGG	5 cut(s)	290, 291, 329, 336, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 330
BseBI	CCWGG	3 cut(s)	127, 177, 292
BseDI	CCNNGG	5 cut(s)	290, 291, 329, 336, 760
BseGI	GGATG	4 cut(s)	431, 634, 730, 835
BseLI	CCNNNNNNNGG	2 cut(s)	132, 330
BseMII	CTCAG	2 cut(s)	491, 750
BseRI	GAGGAG	3 cut(s)	323, 396, 702
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	6 cut(s)	37, 248, 251, 538, 758, 769
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	330
BslI	CCNNNNNNNGG	2 cut(s)	132, 330
BsmAI	GTCTC	2 cut(s)	447, 615
BsnI	GGCC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	57, 150, 210, 508
BspACI	CCGC	4 cut(s)	116, 488, 561, 771
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	2 cut(s)	490, 749
BspLI	GGNNCC	2 cut(s)	42, 317
BspT107I	GGYRCC	1 cut(s)	40
BssECI	CCNNGG	5 cut(s)	290, 291, 329, 336, 760
BssMI	GATC	4 cut(s)	57, 150, 210, 508
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	3 cut(s)	127, 177, 292
Bst4CI	ACNGT	5 cut(s)	100, 409, 433, 439, 505
Bst6I	CTCTTC	3 cut(s)	516, 528, 735
BstC8I	GCNNGC	2 cut(s)	114, 771
BstDEI	CTNAG	3 cut(s)	469, 477, 736
BstDSI	CCRYGG	1 cut(s)	760
BstF5I	GGATG	4 cut(s)	431, 634, 730, 835
BstKTI	GATC	4 cut(s)	60, 153, 213, 511
BstMAI	GTCTC	2 cut(s)	447, 615
BstMBI	GATC	4 cut(s)	57, 150, 210, 508
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 779
BstNI	CCWGG	3 cut(s)	127, 177, 292
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	3 cut(s)	125, 175, 290
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	225
BstV1I	GCAGC	6 cut(s)	37, 248, 251, 538, 758, 769
BsuRI	GGCC	1 cut(s)	335
BtgI	CCRYGG	1 cut(s)	760
BtsCI	GGATG	4 cut(s)	431, 634, 730, 835
Cac8I	GCNNGC	2 cut(s)	114, 771
CaiI	CAGNNNCTG	1 cut(s)	407
Cfr13I	GGNCC	1 cut(s)	333
CviAII	CATG	3 cut(s)	113, 272, 625
DdeI	CTNAG	3 cut(s)	469, 477, 736
DpnI	GATC	4 cut(s)	59, 152, 212, 510
DpnII	GATC	4 cut(s)	57, 150, 210, 508
DraI	TTTAAA	1 cut(s)	825
DriI	GACNNNNNGTC	1 cut(s)	162
Eam1104I	CTCTTC	3 cut(s)	516, 528, 735
Eam1105I	GACNNNNNGTC	1 cut(s)	162
EarI	CTCTTC	3 cut(s)	516, 528, 735
Eco130I	CCWWGG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	330
EcoRII	CCWGG	3 cut(s)	125, 175, 290
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	3 cut(s)	116, 275, 628
FatI	CATG	3 cut(s)	112, 271, 624
FauI	CCCGC	2 cut(s)	554, 778
FauNDI	CATATG	1 cut(s)	658
FbaI	TGATCA	3 cut(s)	57, 150, 508
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	7 cut(s)	51, 117, 237, 240, 552, 747, 783
FokI	GGATG	3 cut(s)	438, 641, 737
Fsp4HI	GCNGC	7 cut(s)	51, 117, 237, 240, 552, 747, 783
FspBI	CTAG	3 cut(s)	299, 609, 786
GluI	GCNGC	7 cut(s)	51, 117, 237, 240, 552, 747, 783
HaeIII	GGCC	1 cut(s)	335
Hin1II	CATG	3 cut(s)	116, 275, 628
HinfI	GANTC	1 cut(s)	455
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	3 cut(s)	104, 150, 739
Hpy188III	TCNNGA	2 cut(s)	154, 393
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	4 cut(s)	8, 297, 349, 793
HpyCH4III	ACNGT	5 cut(s)	100, 409, 433, 439, 505
HpyCH4IV	ACGT	1 cut(s)	834
HpyCH4V	TGCA	4 cut(s)	53, 203, 344, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 779
HpyF3I	CTNAG	3 cut(s)	469, 477, 736
HpySE526I	ACGT	1 cut(s)	834
Hsp92II	CATG	3 cut(s)	116, 275, 628
Ksp22I	TGATCA	3 cut(s)	57, 150, 508
Kzo9I	GATC	4 cut(s)	57, 150, 210, 508
LmnI	GCTCC	2 cut(s)	321, 541
Lsp1109I	GCAGC	6 cut(s)	37, 248, 251, 538, 758, 769
LweI	GCATC	3 cut(s)	452, 715, 726
MaeI	CTAG	3 cut(s)	299, 609, 786
MaeII	ACGT	1 cut(s)	834
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	4 cut(s)	59, 152, 212, 510
MboI	GATC	4 cut(s)	57, 150, 210, 508
MboII	GAAGA	6 cut(s)	85, 94, 177, 533, 545, 752
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	2 cut(s)	181, 702
MlyI	GAGTC	1 cut(s)	449
MroXI	GAANNNNTTC	1 cut(s)	184
MseI	TTAA	5 cut(s)	266, 500, 809, 824, 838
MspA1I	CMGCKG	1 cut(s)	773
MspR9I	CCNGG	3 cut(s)	127, 177, 292
MvaI	CCWGG	3 cut(s)	127, 177, 292
MwoI	GCNNNNNNNGC	2 cut(s)	341, 779
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	4 cut(s)	57, 150, 210, 508
NlaIII	CATG	3 cut(s)	116, 275, 628
NlaIV	GGNNCC	2 cut(s)	42, 317
NmuCI	GTSAC	1 cut(s)	433
NspI	RCATGY	1 cut(s)	116
PaeI	GCATGC	1 cut(s)	116
PasI	CCCWGGG	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	184
PfoI	TCCNGGA	1 cut(s)	125
PkrI	GCNGC	7 cut(s)	52, 118, 238, 241, 553, 748, 784
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
Psp6I	CCWGG	3 cut(s)	125, 175, 290
PspGI	CCWGG	3 cut(s)	125, 175, 290
PspN4I	GGNNCC	2 cut(s)	42, 317
PspPI	GGNCC	1 cut(s)	333
PsrI	GAACNNNNNNTAC	2 cut(s)	388, 420
PstNI	CAGNNNCTG	1 cut(s)	407
SaqAI	TTAA	5 cut(s)	266, 500, 809, 824, 838
SatI	GCNGC	7 cut(s)	51, 117, 237, 240, 552, 747, 783
Sau3AI	GATC	4 cut(s)	57, 150, 210, 508
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	3 cut(s)	127, 177, 292
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	8 cut(s)	331, 406, 578, 598, 614, 678, 815, 837
SfaNI	GCATC	3 cut(s)	452, 715, 726
SfcI	CTRYAG	1 cut(s)	9
SphI	GCATGC	1 cut(s)	116
Sse9I	AATT	2 cut(s)	181, 702
SsiI	CCGC	4 cut(s)	116, 488, 561, 771
SspMI	CTAG	3 cut(s)	299, 609, 786
StyD4I	CCNGG	3 cut(s)	125, 175, 290
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	5 cut(s)	100, 409, 433, 439, 505
TaiI	ACGT	1 cut(s)	837
TaqI	TCGA	1 cut(s)	614
TasI	AATT	2 cut(s)	181, 702
TauI	GCSGC	1 cut(s)	119
Tru1I	TTAA	5 cut(s)	266, 500, 809, 824, 838
Tru9I	TTAA	5 cut(s)	266, 500, 809, 824, 838
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	6 cut(s)	50, 236, 239, 551, 746, 782
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	3 cut(s)	86, 177, 631
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	184
XspI	CTAG	3 cut(s)	299, 609, 786

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.