Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002720

Physical Location & Seq

Genomic Coordinates Forward (+)

55574849 .. 55576200

Gene Structure 1352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCACAGACAGCTCCACCACCACCGTCGCGCCGCCGCCTGGTGCAGACCCCGACAGCCTTCAAGCCACCAACCCCGGCAGAGATCCAGCAAATCGCGACCTATCAAATAGAGGAGGGAGGACTCAGAATTGTTTCTGATGGCATCTGGGATGCCCTATCCTCAGAAGAGGCAGCAAAATCTTGCCGTGGGTTGCCTGCTGAACTTGCTGCTAGACACGTAGTGAAGGTCAAGGGTTTAAAGGATGATACAACCTGTATAGTTGTTGACATAATCCCTCCTGATAACTCGGTACAGCCTACAACTTCCCCAAAAAAGCAGAACAAGCTGAGGGCCCTGTTGTTCAGGAAGAAGTCACGTGATTCTTCTCATAAACTATCCAAGAAGCTATCAGCTGTGGGTATCGTGGAAGAACTATTTGAAGAAGGCTCTGCCACGCTTGCTGAAAGGCTGGGCAATGATGAGTGCACAGCACAATCAACATCATCTGGGCTGTTTATGTGTGCTGTATGCCAAGTTGGCCTTGCACCGAGTGAGGGTATATCTGTTCATGCTGGTTCCATTTTCTCCATGAGTTCAAAGCCTTGGCAAGGGCCTTTCCTCTGTTCTGATTGTCGTAATAAGAAGGATGCCATGGAAGGAAAACGCCCTAGCGGAGTAAGTGTAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

223

Amino Acids

23.92

Weight (kDa)

8.84

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68410 AT1G68410 AT1G68410 AT1G68410
fragaria_vesca	FvH4_4g26880 FvH4_4g26880 FvH4_4g26880
malus_domestica	MD13G1036500.v1.1 MD13G1037200.v1.1 MD13G1037600.v1.1 MD16G1039100.v1.1
prunus_persica	Prupe.1G315600_v2.0.a1
pyrus_communis	pycom13g03190 pycom13g03200 pycom16g03350 pycom16g03360
rosa_chinensis	RchiOBHm_Chr4g0434641 RchiOBHm_Chr4g0434671
rosa_laevigata	RLG00000006658 RLG00000006660
rosa_multiflora	Rmu_co8077860.1_g000001 Rmu_sc0001105.1_g000001 Rmu_sc0007477.1_g000003 Rmu_sc0008439.1_g000010 Rmu_sc0023175.1_g000005
rosa_roxburghii	Rroxscaffold_5G00375880 Rroxscaffold_5G00375900
rosa_rugosa	Rorug04G0277400 Rorug04G0277400 Rorug04G0277500
rosa_samantha	Rh4AG333300 Rh4AG333800 Rh4BG341500 Rh4CG356400
rosa_wichuraiana	Rw4G028920 Rw4G028940 Rw4G029050 Rw4G029070 Rw4G029090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	31, 98
AciI	CCGC	3 cut(s)	34, 37, 654
AclWI	GGATC	1 cut(s)	79
AcvI	CACGTG	1 cut(s)	359
AdeI	CACNNNGTG	2 cut(s)	223, 533
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	3 cut(s)	40, 536, 590
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	3 cut(s)	64, 422, 579
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	4 cut(s)	14, 328, 388, 395
AluI	AGCT	4 cut(s)	14, 328, 388, 395
Alw21I	GWGCWC	1 cut(s)	470
Alw44I	GTGCAC	1 cut(s)	466
AlwI	GGATC	1 cut(s)	79
AoxI	GGCC	3 cut(s)	333, 520, 593
ApaI	GGGCCC	1 cut(s)	337
ApaLI	GTGCAC	1 cut(s)	466
ApeKI	GCWGC	2 cut(s)	173, 209
Asp700I	GAANNNNTTC	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	3 cut(s)	333, 334, 593
AsuC2I	CCSGG	1 cut(s)	77
BaeGI	GKGCMC	2 cut(s)	337, 470
BanII	GRGCYC	1 cut(s)	337
BbrPI	CACGTG	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	470
BbvCI	CCTCAGC	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	185, 196
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	171
BciT130I	CCWGG	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	77
BfaI	CTAG	2 cut(s)	213, 651
BglI	GCCNNNNNGGC	1 cut(s)	519
BisI	GCNGC	4 cut(s)	34, 37, 174, 210
BlsI	GCNGC	4 cut(s)	35, 38, 175, 211
Bme1390I	CCNGG	2 cut(s)	41, 77
BmgT120I	GGNCC	3 cut(s)	333, 334, 593
BmiI	GGNNCC	2 cut(s)	335, 559
BmrFI	CCNGG	2 cut(s)	41, 77
BmsI	GCATC	3 cut(s)	142, 153, 619
Bpu10I	CCTNAGC	1 cut(s)	329
BpuMI	CCSGG	1 cut(s)	77
BsaAI	YACGTR	2 cut(s)	220, 359
BsaJI	CCNNGG	4 cut(s)	75, 187, 584, 633
BsaXI	ACNNNNNCTCC	1 cut(s)	648
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 536, 590
Bse3DI	GCAATG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	4 cut(s)	75, 187, 584, 633
BseGI	GGATG	3 cut(s)	157, 250, 634
BseLI	CCNNNNNNNGG	3 cut(s)	40, 536, 590
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	3 cut(s)	139, 177, 320
BseRI	GAGGAG	1 cut(s)	128
BseSI	GKGCMC	2 cut(s)	337, 470
BseXI	GCAGC	2 cut(s)	185, 196
BseYI	CCCAGC	1 cut(s)	451
BsgI	GTGCAG	1 cut(s)	65
Bsh1236I	CGCG	2 cut(s)	31, 98
BshFI	GGCC	3 cut(s)	335, 522, 595
BsiHKAI	GWGCWC	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	3 cut(s)	40, 536, 590
BsnI	GGCC	3 cut(s)	335, 522, 595
Bsp120I	GGGCCC	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	337, 470
Bsp143I	GATC	1 cut(s)	84
Bsp19I	CCATGG	1 cut(s)	633
Bsp68I	TCGCGA	1 cut(s)	98
BspACI	CCGC	3 cut(s)	34, 37, 654
BspANI	GGCC	3 cut(s)	335, 522, 595
BspCNI	CTCAG	3 cut(s)	138, 176, 321
BspFNI	CGCG	2 cut(s)	31, 98
BspLI	GGNNCC	2 cut(s)	335, 559
BspPI	GGATC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	463
BssECI	CCNNGG	4 cut(s)	75, 187, 584, 633
BssMI	GATC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	584, 633
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	162
BstBAI	YACGTR	2 cut(s)	220, 359
BstC8I	GCNNGC	2 cut(s)	198, 441
BstDEI	CTNAG	3 cut(s)	125, 163, 329
BstDSI	CCRYGG	2 cut(s)	187, 633
BstENI	CCTNNNNNAGG	1 cut(s)	588
BstF5I	GGATG	3 cut(s)	157, 250, 634
BstFNI	CGCG	2 cut(s)	31, 98
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 206, 325, 440, 519
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	39, 75
BstSLI	GKGCMC	2 cut(s)	337, 470
BstUI	CGCG	2 cut(s)	31, 98
BstV1I	GCAGC	2 cut(s)	185, 196
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	3 cut(s)	335, 522, 595
BtgI	CCRYGG	2 cut(s)	187, 633
BtsCI	GGATG	3 cut(s)	157, 250, 634
BtuMI	TCGCGA	1 cut(s)	98
Cac8I	GCNNGC	2 cut(s)	198, 441
CfoI	GCGC	1 cut(s)	33
Cfr13I	GGNCC	3 cut(s)	333, 334, 593
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	3 cut(s)	551, 571, 634
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	3 cut(s)	125, 163, 329
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
DraI	TTTAAA	1 cut(s)	240
DraIII	CACNNNGTG	2 cut(s)	223, 533
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco130I	CCWWGG	2 cut(s)	584, 633
Eco24I	GRGCYC	1 cut(s)	337
Eco72I	CACGTG	1 cut(s)	359
EcoNI	CCTNNNNNAGG	1 cut(s)	588
EcoO109I	RGGNCCY	3 cut(s)	333, 334, 593
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	2 cut(s)	584, 633
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	2 cut(s)	584, 633
FaeI	CATG	3 cut(s)	554, 574, 637
FaiI	YATR	9 cut(s)	260, 272, 372, 500, 511, 542, 552, 572, 635
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FatI	CATG	3 cut(s)	550, 570, 633
Fnu4HI	GCNGC	4 cut(s)	34, 37, 174, 210
FokI	GGATG	3 cut(s)	164, 257, 641
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	4 cut(s)	34, 37, 174, 210
FspBI	CTAG	2 cut(s)	213, 651
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	4 cut(s)	34, 37, 174, 210
GsaI	CCCAGC	1 cut(s)	455
HaeIII	GGCC	3 cut(s)	335, 522, 595
HapII	CCGG	1 cut(s)	77
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	554, 574, 637
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	2 cut(s)	123, 362
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	2 cut(s)	268, 468
Hpy188I	TCNGA	4 cut(s)	128, 139, 166, 610
Hpy188III	TCNNGA	3 cut(s)	97, 281, 346
Hpy8I	GTNNAC	2 cut(s)	268, 468
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	5 cut(s)	70, 220, 419, 619, 632
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4IV	ACGT	2 cut(s)	219, 358
HpyCH4V	TGCA	3 cut(s)	46, 468, 527
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 206, 325, 440, 519
HpyF3I	CTNAG	3 cut(s)	125, 163, 329
HpySE526I	ACGT	2 cut(s)	219, 358
Hsp92II	CATG	3 cut(s)	554, 574, 637
HspAI	GCGC	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	2 cut(s)	185, 196
LweI	GCATC	3 cut(s)	142, 153, 619
MaeI	CTAG	2 cut(s)	213, 651
MaeII	ACGT	2 cut(s)	219, 358
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	5 cut(s)	179, 357, 361, 422, 434
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	2 cut(s)	337, 470
MluCI	AATT	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	117
MnlI	CCTC	9 cut(s)	106, 109, 113, 163, 172, 288, 324, 529, 611
MroXI	GAANNNNTTC	1 cut(s)	133
MseI	TTAA	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	2 cut(s)	41, 77
MvaI	CCWGG	1 cut(s)	41
MvnI	CGCG	2 cut(s)	31, 98
MwoI	GCNNNNNNNGC	5 cut(s)	11, 206, 325, 440, 519
NciI	CCSGG	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	633
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	3 cut(s)	554, 574, 637
NlaIV	GGNNCC	2 cut(s)	335, 559
NmuCI	GTSAC	1 cut(s)	354
NruI	TCGCGA	1 cut(s)	98
PdmI	GAANNNNTTC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	4 cut(s)	35, 38, 175, 211
PleI	GAGTC	1 cut(s)	117
PmaCI	CACGTG	1 cut(s)	359
PmlI	CACGTG	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	117
Ppu21I	YACGTR	2 cut(s)	220, 359
Psp6I	CCWGG	1 cut(s)	39
PspCI	CACGTG	1 cut(s)	359
PspFI	CCCAGC	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	335, 559
PspOMI	GGGCCC	1 cut(s)	333
PspPI	GGNCC	3 cut(s)	333, 334, 593
PsuI	RGATCY	1 cut(s)	84
PvuII	CAGCTG	1 cut(s)	395
RruI	TCGCGA	1 cut(s)	98
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	4 cut(s)	34, 37, 174, 210
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	3 cut(s)	333, 334, 593
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	2 cut(s)	41, 77
SduI	GDGCHC	2 cut(s)	337, 470
SetI	ASST	9 cut(s)	16, 104, 222, 231, 257, 330, 361, 390, 397
SfaNI	GCATC	3 cut(s)	142, 153, 619
Sse9I	AATT	1 cut(s)	129
SsiI	CCGC	3 cut(s)	34, 37, 654
SspMI	CTAG	2 cut(s)	213, 651
StyD4I	CCNGG	2 cut(s)	39, 75
StyI	CCWWGG	2 cut(s)	584, 633
TaaI	ACNGT	1 cut(s)	27
TaiI	ACGT	2 cut(s)	222, 361
TasI	AATT	1 cut(s)	129
TauI	GCSGC	2 cut(s)	36, 39
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	354
TseI	GCWGC	2 cut(s)	173, 209
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	1 cut(s)	539
VneI	GTGCAC	1 cut(s)	466
XagI	CCTNNNNNAGG	1 cut(s)	588
XmnI	GAANNNNTTC	1 cut(s)	133
XspI	CTAG	2 cut(s)	213, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.