Rmu_co8077860.1_g000001

protein phosphatase 2C 15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8077860.1
OG0002720
Physical Location & Seq
Reverse (-)
1 .. 511
511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8077860.1_g000001.1.cds

Sequence Viewer

Length: 278 bp
atgaagaatgagaagatggaaaaaccgactgtcagatacgggcatgcggctcaatccaggaaaggggaggattattttctgatcaagactgatggtcagcgagtgcctggaaattcttcatcaacattttctgcatttgcgatctttgacgggcacaatggaaacgcagcagccatatatacaagggagaacttgttaaatcatgtgatgggtgctattcccagggggctaggaagggaggagtggctccaagccttacctcgggccttggttgcagg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

93

Amino Acids

10.23

Weight (kDa)

9.52

Isoelectric Point (pI)

29.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 112
AfiI CCNNNNNNNGG 2 cut(s) 63, 261
AhdI GACNNNNNGTC 1 cut(s) 93
AjnI CCWGG 3 cut(s) 56, 106, 221
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 2 cut(s) 167, 170
ApoI RAATTY 1 cut(s) 112
Asp700I GAANNNNTTC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 264
AvaI CYCGRG 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 156
BbvI GCAGC 2 cut(s) 179, 182
BccI CCATC 3 cut(s) 10, 86, 202
BciT130I CCWGG 3 cut(s) 58, 108, 223
BclI TGATCA 1 cut(s) 81
BfaI CTAG 1 cut(s) 230
BisI GCNGC 3 cut(s) 48, 168, 171
BlsI GCNGC 3 cut(s) 49, 169, 172
Bme1390I CCNGG 3 cut(s) 58, 108, 223
BmeRI GACNNNNNGTC 1 cut(s) 93
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 248
BmrFI CCNGG 3 cut(s) 58, 108, 223
BsaJI CCNNGG 4 cut(s) 221, 222, 260, 267
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 261
BseBI CCWGG 3 cut(s) 58, 108, 223
BseDI CCNNGG 4 cut(s) 221, 222, 260, 267
BseLI CCNNNNNNNGG 2 cut(s) 63, 261
BseRI GAGGAG 1 cut(s) 254
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 2 cut(s) 179, 182
BshFI GGCC 1 cut(s) 266
BsiHKCI CYCGRG 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 63, 261
BsnI GGCC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 81, 141
BspACI CCGC 1 cut(s) 47
BspANI GGCC 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 248
BssECI CCNNGG 4 cut(s) 221, 222, 260, 267
BssMI GATC 2 cut(s) 81, 141
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 3 cut(s) 58, 108, 223
Bst4CI ACNGT 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 45
BstKTI GATC 2 cut(s) 84, 144
BstMBI GATC 2 cut(s) 81, 141
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 3 cut(s) 58, 108, 223
BstNSI RCATGY 1 cut(s) 47
BstSCI CCNGG 3 cut(s) 56, 106, 221
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 179, 182
BsuRI GGCC 1 cut(s) 266
Cac8I GCNNGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 264
CviAII CATG 2 cut(s) 44, 203
CviJI RGCY 6 cut(s) 50, 173, 229, 247, 254, 266
CviKI_1 RGCY 6 cut(s) 50, 173, 229, 247, 254, 266
DpnI GATC 2 cut(s) 83, 143
DpnII GATC 2 cut(s) 81, 141
DriI GACNNNNNGTC 1 cut(s) 93
Eam1105I GACNNNNNGTC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 261
EcoRII CCWGG 3 cut(s) 56, 106, 221
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 2 cut(s) 47, 206
FaiI YATR 5 cut(s) 45, 176, 178, 180, 204
FatI CATG 2 cut(s) 43, 202
FbaI TGATCA 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 48, 168, 171
Fsp4HI GCNGC 3 cut(s) 48, 168, 171
FspBI CTAG 1 cut(s) 230
GluI GCNGC 3 cut(s) 48, 168, 171
HaeIII GGCC 1 cut(s) 266
Hin1II CATG 2 cut(s) 47, 206
Hpy188I TCNGA 2 cut(s) 35, 81
Hpy188III TCNNGA 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 228
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 134, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
Hsp92II CATG 2 cut(s) 47, 206
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 2 cut(s) 81, 141
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 7 cut(s) 43, 70, 93, 120, 208, 235, 261
Lsp1109I GCAGC 2 cut(s) 179, 182
MaeI CTAG 1 cut(s) 230
MalI GATC 2 cut(s) 83, 143
MboI GATC 2 cut(s) 81, 141
MboII GAAGA 3 cut(s) 16, 25, 108
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 1 cut(s) 112
MnlI CCTC 3 cut(s) 61, 232, 270
MroXI GAANNNNTTC 1 cut(s) 115
MseI TTAA 1 cut(s) 197
MspR9I CCNGG 3 cut(s) 58, 108, 223
MvaI CCWGG 3 cut(s) 58, 108, 223
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 2 cut(s) 81, 141
NlaIII CATG 2 cut(s) 47, 206
NlaIV GGNNCC 1 cut(s) 248
NspI RCATGY 1 cut(s) 47
PaeI GCATGC 1 cut(s) 47
PasI CCCWGGG 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 115
PfoI TCCNGGA 1 cut(s) 56
PkrI GCNGC 3 cut(s) 49, 169, 172
Psp6I CCWGG 3 cut(s) 56, 106, 221
PspGI CCWGG 3 cut(s) 56, 106, 221
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 1 cut(s) 264
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 3 cut(s) 48, 168, 171
Sau3AI GATC 2 cut(s) 81, 141
Sau96I GGNCC 1 cut(s) 264
ScrFI CCNGG 3 cut(s) 58, 108, 223
SduI GDGCHC 1 cut(s) 156
SetI ASST 1 cut(s) 262
SphI GCATGC 1 cut(s) 47
Sse9I AATT 1 cut(s) 112
SsiI CCGC 1 cut(s) 47
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 3 cut(s) 56, 106, 221
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 31
TasI AATT 1 cut(s) 112
TauI GCSGC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TseI GCWGC 2 cut(s) 167, 170
TspDTI ATGAA 2 cut(s) 17, 108
XapI RAATTY 1 cut(s) 112
XceI RCATGY 1 cut(s) 47
XmnI GAANNNNTTC 1 cut(s) 115
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.