Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001105.1

Orthogroup ID

OG0002720

Physical Location & Seq

Genomic Coordinates Reverse (-)

1508 .. 3424

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001105.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atgctatcaaatagaggagggaggctcataattgcttcttatggcatctgggatgccctatcctcagaagaggcagcaaaatcttgccgtgggttgcccgctgaacttgctgctagacaagtagtgaaggaggctttaaggtcaaggggtttaaagggtgatacaacctgtatagttgttgacataatccctcctgataactcggtactgcctacaactcccccaaaaaagcagaacaagctgagggccctgttgttcaggaagaagtcacgtgattctgctcacaaactatccaagaagctatcagctgtgggtattgtggaagaactatttgaagaaggctctgccatgcttgctgaaaggctgggcaatgatgagtgcacggcacaatcaacaacatctgggctgtttatgtgtgctgtatgccaagttgaccttgcaccgagtgagggcatatctgttcatgttggttccatcttctccatgagttcaaagccttggcaagggcctttcctctgttctgattgtcgtaataataggatgccatggaaggaaaacgccctagcggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

190

Amino Acids

20.61

Weight (kDa)

8.7

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68410 AT1G68410 AT1G68410 AT1G68410
fragaria_vesca	FvH4_4g26880 FvH4_4g26880 FvH4_4g26880
malus_domestica	MD13G1036500.v1.1 MD13G1037200.v1.1 MD13G1037600.v1.1 MD16G1039100.v1.1
prunus_persica	Prupe.1G315600_v2.0.a1
pyrus_communis	pycom13g03190 pycom13g03200 pycom16g03350 pycom16g03360
rosa_chinensis	RchiOBHm_Chr4g0434641 RchiOBHm_Chr4g0434671
rosa_laevigata	RLG00000006658 RLG00000006660
rosa_multiflora	Rmu_co8077860.1_g000001 Rmu_sc0001105.1_g000001 Rmu_sc0007477.1_g000003 Rmu_sc0008439.1_g000010 Rmu_sc0023175.1_g000005
rosa_roxburghii	Rroxscaffold_5G00375880 Rroxscaffold_5G00375900
rosa_rugosa	Rorug04G0277400 Rorug04G0277400 Rorug04G0277500
rosa_samantha	Rh4AG333300 Rh4AG333800 Rh4BG341500 Rh4CG356400
rosa_wichuraiana	Rw4G028920 Rw4G028940 Rw4G029050 Rw4G029070 Rw4G029090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	99, 566
AcvI	CACGTG	1 cut(s)	272
AdeI	CACNNNGTG	1 cut(s)	446
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	2 cut(s)	449, 503
AgsI	TTSAA	2 cut(s)	335, 492
AluBI	AGCT	3 cut(s)	241, 301, 308
AluI	AGCT	3 cut(s)	241, 301, 308
Alw21I	GWGCWC	1 cut(s)	383
Alw44I	GTGCAC	1 cut(s)	379
AoxI	GGCC	2 cut(s)	246, 506
ApaI	GGGCCC	1 cut(s)	250
ApaLI	GTGCAC	1 cut(s)	379
ApeKI	GCWGC	2 cut(s)	74, 110
AspS9I	GGNCC	3 cut(s)	246, 247, 506
AsuHPI	GGTGA	1 cut(s)	170
BaeGI	GKGCMC	2 cut(s)	250, 383
BanII	GRGCYC	1 cut(s)	250
BbrPI	CACGTG	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	383
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	86, 97
BccI	CCATC	1 cut(s)	482
BceAI	ACGGC	2 cut(s)	72, 399
BfaI	CTAG	2 cut(s)	114, 563
BisI	GCNGC	2 cut(s)	75, 111
BlsI	GCNGC	2 cut(s)	76, 112
BmgT120I	GGNCC	3 cut(s)	246, 247, 506
BmiI	GGNNCC	2 cut(s)	248, 472
BmsI	GCATC	3 cut(s)	43, 54, 531
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
Bpu10I	CCTNAGC	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	88, 497, 545
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 503
Bse3DI	GCAATG	1 cut(s)	376
BseDI	CCNNGG	3 cut(s)	88, 497, 545
BseGI	GGATG	2 cut(s)	58, 546
BseLI	CCNNNNNNNGG	2 cut(s)	449, 503
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	2 cut(s)	78, 233
BseRI	GAGGAG	1 cut(s)	30
BseSI	GKGCMC	2 cut(s)	250, 383
BseXI	GCAGC	2 cut(s)	86, 97
BseYI	CCCAGC	1 cut(s)	364
BshFI	GGCC	2 cut(s)	248, 508
BsiHKAI	GWGCWC	1 cut(s)	383
BslI	CCNNNNNNNGG	2 cut(s)	449, 503
BsnI	GGCC	2 cut(s)	248, 508
Bsp120I	GGGCCC	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	250, 383
Bsp19I	CCATGG	1 cut(s)	545
BspACI	CCGC	2 cut(s)	99, 566
BspANI	GGCC	2 cut(s)	248, 508
BspCNI	CTCAG	2 cut(s)	77, 234
BspLI	GGNNCC	2 cut(s)	248, 472
BsrDI	GCAATG	1 cut(s)	376
BssECI	CCNNGG	3 cut(s)	88, 497, 545
BssT1I	CCWWGG	2 cut(s)	497, 545
Bst6I	CTCTTC	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	99, 354
BstDEI	CTNAG	2 cut(s)	64, 242
BstDSI	CCRYGG	2 cut(s)	88, 545
BstENI	CCTNNNNNAGG	1 cut(s)	501
BstF5I	GGATG	2 cut(s)	58, 546
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 238, 353
BstSLI	GKGCMC	2 cut(s)	250, 383
BstV1I	GCAGC	2 cut(s)	86, 97
BsuRI	GGCC	2 cut(s)	248, 508
BtgI	CCRYGG	2 cut(s)	88, 545
BtsCI	GGATG	2 cut(s)	58, 546
Cac8I	GCNNGC	2 cut(s)	99, 354
Cfr13I	GGNCC	3 cut(s)	246, 247, 506
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	4 cut(s)	349, 464, 484, 546
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	2 cut(s)	64, 242
DraI	TTTAAA	1 cut(s)	153
DraIII	CACNNNGTG	1 cut(s)	446
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	497, 545
Eco24I	GRGCYC	1 cut(s)	250
Eco72I	CACGTG	1 cut(s)	272
EcoNI	CCTNNNNNAGG	1 cut(s)	501
EcoO109I	RGGNCCY	3 cut(s)	246, 247, 506
EcoT14I	CCWWGG	2 cut(s)	497, 545
EcoT38I	GRGCYC	1 cut(s)	250
ErhI	CCWWGG	2 cut(s)	497, 545
FaeI	CATG	4 cut(s)	352, 467, 487, 549
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	4 cut(s)	348, 463, 483, 545
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	75, 111
FokI	GGATG	2 cut(s)	65, 553
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	2 cut(s)	75, 111
FspBI	CTAG	2 cut(s)	114, 563
GluI	GCNGC	2 cut(s)	75, 111
GsaI	CCCAGC	1 cut(s)	368
HaeIII	GGCC	2 cut(s)	248, 508
Hin1II	CATG	4 cut(s)	352, 467, 487, 549
HincII	GTYRAC	2 cut(s)	181, 433
HindII	GTYRAC	2 cut(s)	181, 433
HinfI	GANTC	1 cut(s)	275
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	3 cut(s)	181, 381, 433
Hpy188I	TCNGA	2 cut(s)	67, 523
Hpy188III	TCNNGA	2 cut(s)	194, 259
Hpy8I	GTNNAC	3 cut(s)	181, 381, 433
HpyAV	CCTTC	3 cut(s)	121, 332, 544
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	2 cut(s)	381, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 238, 353
HpyF3I	CTNAG	2 cut(s)	64, 242
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	4 cut(s)	352, 467, 487, 549
LpnPI	CCDG	7 cut(s)	34, 181, 207, 244, 263, 350, 387
Lsp1109I	GCAGC	2 cut(s)	86, 97
LweI	GCATC	3 cut(s)	43, 54, 531
MaeI	CTAG	2 cut(s)	114, 563
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	267
MboII	GAAGA	5 cut(s)	80, 274, 335, 347, 469
MhlI	GDGCHC	2 cut(s)	250, 383
MluCI	AATT	1 cut(s)	30
MseI	TTAA	2 cut(s)	137, 152
MspA1I	CMGCKG	2 cut(s)	101, 308
MwoI	GCNNNNNNNGC	3 cut(s)	107, 238, 353
NcoI	CCATGG	1 cut(s)	545
NlaIII	CATG	4 cut(s)	352, 467, 487, 549
NlaIV	GGNNCC	2 cut(s)	248, 472
NmuCI	GTSAC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	76, 112
PmaCI	CACGTG	1 cut(s)	272
PmlI	CACGTG	1 cut(s)	272
Ppu21I	YACGTR	1 cut(s)	272
PspCI	CACGTG	1 cut(s)	272
PspFI	CCCAGC	1 cut(s)	364
PspN4I	GGNNCC	2 cut(s)	248, 472
PspOMI	GGGCCC	1 cut(s)	246
PspPI	GGNCC	3 cut(s)	246, 247, 506
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	137, 152
SatI	GCNGC	2 cut(s)	75, 111
Sau96I	GGNCC	3 cut(s)	246, 247, 506
SduI	GDGCHC	2 cut(s)	250, 383
SetI	ASST	7 cut(s)	143, 170, 243, 274, 303, 310, 438
SfaNI	GCATC	3 cut(s)	43, 54, 531
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	2 cut(s)	99, 566
SspMI	CTAG	2 cut(s)	114, 563
StyI	CCWWGG	2 cut(s)	497, 545
TaiI	ACGT	1 cut(s)	274
TasI	AATT	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	2 cut(s)	137, 152
Tru9I	TTAA	2 cut(s)	137, 152
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	2 cut(s)	74, 110
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	1 cut(s)	452
VneI	GTGCAC	1 cut(s)	379
XagI	CCTNNNNNAGG	1 cut(s)	501
XspI	CTAG	2 cut(s)	114, 563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.