Rw4G029070

protein phosphatase 2C 15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002720
Physical Location & Seq
Forward (+)
55744924 .. 55747031
2108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G029070.1

Sequence Viewer

Length: 1113 bp
ATGCTTTTGGAAAAGCCGACTGTCAGATACGAGCATGCAGCTCAATCCAGGAAGGGGGAGGATTATTTTCTGATCAAGACTGATGGTCAGCGAGTGCCCGGAAATTCTTCATCAACATTTTCTGCATTTGCGCCATATATACAAGAGAGAACTTGTTTAAATCATGCGTTGGGTGCTATTCCAAGGGGACTAGGAAGGGAGGAGTGGCTCCAAGCCTTACCTCGGGCCTTGGTTGCAGGGTTTGTGAAGGCTGATAAGGATTTCCAGAGTAGAGGAGAAACTTCTGGAACAACAGCTACTGTTGTAATAGTTGATGGATGGACTGTGACAGTAGCATCAGTAGGAGACTCCCGTTGTATCTTAGATACTCAGGGTGGTGCGGTTTCCACTTTAACTGTTGATCATAGACTTGAAGAAAATGTGGAAGAGAGGGAGCGTGTTGCTGCAAGTGGCGGGGAAGTAGGGAGGTTGAGCATTGTTGGTGGTGCGGAGATTGGTCCTCTTCGTTGTTGGCCAGGAGGTTTACGCCTGTCTAGGTCGATTGGAGACATGGATGTTGGGGAGTTCATAGTTCCAATACCATATGTGAAACAAGTCAAGCTATCAAATAGAGGAGGGAGGCTCATAATTGCTTCTGATGGCATCTGGGATACCCTATCCTCAGAAGAGGCAGCAAAATCTTGCCGTGGGTTACCCGCTGAACTTGCCGCTAGACAAGTAGTGAAGGCTTTAAGGTCAAGGGGTTTAAAGGATAATACAACCTGTATAGTTGTTGACATAATCCCTCCTGATAACTCGGTACAGCCTACAACTCCCCCAAAAAAGCAGAACAAGCTGAGGGCCCTGTTGTTCAGGAAGAAGTCACGTGATTCTGCTCACAAACTATCCAAGAAGCTATCAGCTGTGGGTATCGTGGAAGAACTATTTGAAGAAGGCTCTGCCATGCTTGCTGAAAGGCTGCGCAATGATGAGTGCACGGGCATATCTGTTCATGCTGGTTCCATCTTCTCCATGCGTTCAAAGCCTTGGCAAGGGCCTTTCCTCTGTTCTGATTGTCGTAATAAGAAGGATGCCATGGAAGGAAAACGCCCTAGCGGAGTAAGAGTAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

370

Amino Acids

40.18

Weight (kDa)

9.16

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 74 - 252 1.7e-31 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 962
AciI CCGC 6 cut(s) 380, 453, 488, 696, 708, 1095
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 1 cut(s) 103
AcvI CACGTG 1 cut(s) 866
AfaI GTAC 1 cut(s) 801
AfiI CCNNNNNNNGG 3 cut(s) 54, 222, 1031
AgsI TTSAA 3 cut(s) 413, 929, 1020
AhdI GACNNNNNGTC 1 cut(s) 84
AjnI CCWGG 2 cut(s) 47, 514
AluBI AGCT 6 cut(s) 41, 296, 601, 835, 895, 902
AluI AGCT 6 cut(s) 41, 296, 601, 835, 895, 902
Alw21I GWGCWC 1 cut(s) 977
Alw26I GTCTC 2 cut(s) 339, 540
Alw44I GTGCAC 1 cut(s) 973
AlwNI CAGNNNCTG 1 cut(s) 299
Ama87I CYCGRG 1 cut(s) 222
AoxI GGCC 4 cut(s) 225, 512, 840, 1034
ApaI GGGCCC 1 cut(s) 844
ApaLI GTGCAC 1 cut(s) 973
ApeKI GCWGC 4 cut(s) 38, 443, 671, 958
ApoI RAATTY 1 cut(s) 103
Asp700I GAANNNNTTC 1 cut(s) 106
AspLEI GCGC 2 cut(s) 133, 963
AspS9I GGNCC 5 cut(s) 225, 497, 840, 841, 1034
AsuC2I CCSGG 1 cut(s) 99
AvaI CYCGRG 1 cut(s) 222
AvaII GGWCC 1 cut(s) 497
BaeGI GKGCMC 3 cut(s) 99, 844, 977
BalI TGGCCA 1 cut(s) 514
BanII GRGCYC 1 cut(s) 844
BbrPI CACGTG 1 cut(s) 866
Bbv12I GWGCWC 1 cut(s) 977
BbvCI CCTCAGC 1 cut(s) 836
BbvI GCAGC 4 cut(s) 50, 430, 683, 945
BccI CCATC 5 cut(s) 77, 308, 312, 632, 1010
BceAI ACGGC 1 cut(s) 669
BciT130I CCWGG 2 cut(s) 49, 516
BciVI GTATCC 1 cut(s) 643
BclI TGATCA 2 cut(s) 72, 400
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 339, 540
BfaI CTAG 4 cut(s) 191, 534, 711, 1092
BfuI GTATCC 1 cut(s) 643
BisI GCNGC 5 cut(s) 39, 444, 672, 708, 959
BlsI GCNGC 5 cut(s) 40, 445, 673, 709, 960
Bme1390I CCNGG 3 cut(s) 49, 99, 516
Bme18I GGWCC 1 cut(s) 497
BmeRI GACNNNNNGTC 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 222
BmgT120I GGNCC 5 cut(s) 225, 497, 840, 841, 1034
BmiI GGNNCC 3 cut(s) 209, 842, 1000
BmrFI CCNGG 3 cut(s) 49, 99, 516
BmsI GCATC 3 cut(s) 344, 651, 1060
BplI GAGNNNNNCTC 2 cut(s) 606, 638
Bpu10I CCTNAGC 1 cut(s) 836
BpuMI CCSGG 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 866
BsaJI CCNNGG 6 cut(s) 182, 221, 228, 685, 1025, 1074
BsaXI ACNNNNNCTCC 1 cut(s) 1089
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 222, 1031
Bse3DI GCAATG 1 cut(s) 970
BseBI CCWGG 2 cut(s) 49, 516
BseDI CCNNGG 6 cut(s) 182, 221, 228, 685, 1025, 1074
BseGI GGATG 3 cut(s) 323, 559, 1075
BseLI CCNNNNNNNGG 3 cut(s) 54, 222, 1031
BseMI GCAATG 1 cut(s) 970
BseMII CTCAG 3 cut(s) 383, 675, 827
BseRI GAGGAG 3 cut(s) 215, 288, 627
BseSI GKGCMC 3 cut(s) 99, 844, 977
BseXI GCAGC 4 cut(s) 50, 430, 683, 945
BshFI GGCC 4 cut(s) 227, 514, 842, 1036
BsiHKAI GWGCWC 1 cut(s) 977
BsiHKCI CYCGRG 1 cut(s) 222
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 3 cut(s) 54, 222, 1031
BsmAI GTCTC 2 cut(s) 339, 540
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 4 cut(s) 227, 514, 842, 1036
BsoBI CYCGRG 1 cut(s) 222
Bsp120I GGGCCC 1 cut(s) 840
Bsp1286I GDGCHC 3 cut(s) 99, 844, 977
Bsp143I GATC 2 cut(s) 72, 400
Bsp19I CCATGG 1 cut(s) 1074
BspACI CCGC 6 cut(s) 380, 453, 488, 696, 708, 1095
BspANI GGCC 4 cut(s) 227, 514, 842, 1036
BspCNI CTCAG 3 cut(s) 382, 674, 828
BspLI GGNNCC 3 cut(s) 209, 842, 1000
BsrDI GCAATG 1 cut(s) 970
BssECI CCNNGG 6 cut(s) 182, 221, 228, 685, 1025, 1074
BssMI GATC 2 cut(s) 72, 400
BssT1I CCWWGG 4 cut(s) 182, 228, 1025, 1074
Bst2UI CCWGG 2 cut(s) 49, 516
Bst4CI ACNGT 5 cut(s) 22, 301, 325, 331, 397
Bst6I CTCTTC 3 cut(s) 420, 507, 660
BstBAI YACGTR 1 cut(s) 866
BstC8I GCNNGC 2 cut(s) 36, 948
BstDEI CTNAG 4 cut(s) 361, 369, 661, 836
BstDSI CCRYGG 2 cut(s) 685, 1074
BstEII GGTNACC 1 cut(s) 690
BstENI CCTNNNNNAGG 1 cut(s) 1029
BstF5I GGATG 3 cut(s) 323, 559, 1075
BstHHI GCGC 2 cut(s) 133, 963
BstKTI GATC 2 cut(s) 75, 403
BstMAI GTCTC 2 cut(s) 339, 540
BstMBI GATC 2 cut(s) 72, 400
BstMWI GCNNNNNNNGC 6 cut(s) 173, 233, 704, 832, 947, 1021
BstNI CCWGG 2 cut(s) 49, 516
BstNSI RCATGY 1 cut(s) 38
BstPI GGTNACC 1 cut(s) 690
BstSCI CCNGG 3 cut(s) 47, 97, 514
BstSLI GKGCMC 3 cut(s) 99, 844, 977
BstV1I GCAGC 4 cut(s) 50, 430, 683, 945
BsuI GTATCC 1 cut(s) 643
BsuRI GGCC 4 cut(s) 227, 514, 842, 1036
BtgI CCRYGG 2 cut(s) 685, 1074
BtsCI GGATG 3 cut(s) 323, 559, 1075
Cac8I GCNNGC 2 cut(s) 36, 948
CaiI CAGNNNCTG 1 cut(s) 299
CfoI GCGC 2 cut(s) 133, 963
Cfr13I GGNCC 5 cut(s) 225, 497, 840, 841, 1034
Csp6I GTAC 1 cut(s) 800
CviAII CATG 7 cut(s) 35, 164, 550, 943, 992, 1012, 1075
CviQI GTAC 1 cut(s) 800
DdeI CTNAG 4 cut(s) 361, 369, 661, 836
DpnI GATC 2 cut(s) 74, 402
DpnII GATC 2 cut(s) 72, 400
DraI TTTAAA 2 cut(s) 159, 747
DriI GACNNNNNGTC 1 cut(s) 84
EaeI YGGCCR 1 cut(s) 512
Eam1104I CTCTTC 3 cut(s) 420, 507, 660
Eam1105I GACNNNNNGTC 1 cut(s) 84
EarI CTCTTC 3 cut(s) 420, 507, 660
Eco130I CCWWGG 4 cut(s) 182, 228, 1025, 1074
Eco24I GRGCYC 1 cut(s) 844
Eco47I GGWCC 1 cut(s) 497
Eco72I CACGTG 1 cut(s) 866
Eco88I CYCGRG 1 cut(s) 222
Eco91I GGTNACC 1 cut(s) 690
EcoNI CCTNNNNNAGG 1 cut(s) 1029
EcoO109I RGGNCCY 3 cut(s) 840, 841, 1034
EcoO65I GGTNACC 1 cut(s) 690
EcoRII CCWGG 2 cut(s) 47, 514
EcoT14I CCWWGG 4 cut(s) 182, 228, 1025, 1074
EcoT38I GRGCYC 1 cut(s) 844
ErhI CCWWGG 4 cut(s) 182, 228, 1025, 1074
FaeI CATG 7 cut(s) 38, 167, 553, 946, 995, 1015, 1078
FaqI GGGAC 1 cut(s) 201
FatI CATG 7 cut(s) 34, 163, 549, 942, 991, 1011, 1074
FauI CCCGC 2 cut(s) 446, 703
FauNDI CATATG 1 cut(s) 583
FbaI TGATCA 2 cut(s) 72, 400
Fnu4HI GCNGC 5 cut(s) 39, 444, 672, 708, 959
FokI GGATG 3 cut(s) 330, 566, 1082
FriOI GRGCYC 1 cut(s) 844
Fsp4HI GCNGC 5 cut(s) 39, 444, 672, 708, 959
FspBI CTAG 4 cut(s) 191, 534, 711, 1092
FspI TGCGCA 1 cut(s) 962
GlaI GCGC 2 cut(s) 132, 962
GluI GCNGC 5 cut(s) 39, 444, 672, 708, 959
HaeIII GGCC 4 cut(s) 227, 514, 842, 1036
HapII CCGG 1 cut(s) 99
HhaI GCGC 2 cut(s) 133, 963
Hin1II CATG 7 cut(s) 38, 167, 553, 946, 995, 1015, 1078
Hin6I GCGC 2 cut(s) 131, 961
HinP1I GCGC 2 cut(s) 131, 961
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 2 cut(s) 347, 869
HpaII CCGG 1 cut(s) 99
Hpy166II GTNNAC 3 cut(s) 524, 775, 975
Hpy188I TCNGA 5 cut(s) 26, 72, 637, 664, 1051
Hpy188III TCNNGA 5 cut(s) 76, 265, 285, 788, 853
Hpy8I GTNNAC 3 cut(s) 524, 775, 975
HpyAV CCTTC 7 cut(s) 46, 189, 241, 718, 926, 1060, 1073
HpyCH4III ACNGT 5 cut(s) 22, 301, 325, 331, 397
HpyCH4IV ACGT 1 cut(s) 865
HpyCH4V TGCA 5 cut(s) 38, 125, 236, 446, 975
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 233, 704, 832, 947, 1021
HpyF3I CTNAG 4 cut(s) 361, 369, 661, 836
HpySE526I ACGT 1 cut(s) 865
Hsp92II CATG 7 cut(s) 38, 167, 553, 946, 995, 1015, 1078
HspAI GCGC 2 cut(s) 131, 961
Ksp22I TGATCA 2 cut(s) 72, 400
Kzo9I GATC 2 cut(s) 72, 400
LmnI GCTCC 2 cut(s) 213, 433
Lsp1109I GCAGC 4 cut(s) 50, 430, 683, 945
LweI GCATC 3 cut(s) 344, 651, 1060
MaeI CTAG 4 cut(s) 191, 534, 711, 1092
MaeII ACGT 1 cut(s) 865
MaeIII GTNAC 3 cut(s) 325, 690, 861
MalI GATC 2 cut(s) 74, 402
MboI GATC 2 cut(s) 72, 400
MboII GAAGA 9 cut(s) 99, 425, 437, 494, 677, 868, 929, 941, 997
MhlI GDGCHC 3 cut(s) 99, 844, 977
MlsI TGGCCA 1 cut(s) 514
MluCI AATT 2 cut(s) 103, 627
MluNI TGGCCA 1 cut(s) 514
MlyI GAGTC 1 cut(s) 341
Mox20I TGGCCA 1 cut(s) 514
MroXI GAANNNNTTC 1 cut(s) 106
MscI TGGCCA 1 cut(s) 514
MseI TTAA 4 cut(s) 158, 392, 731, 746
Msp20I TGGCCA 1 cut(s) 514
MspA1I CMGCKG 2 cut(s) 698, 902
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 3 cut(s) 49, 99, 516
MvaI CCWGG 2 cut(s) 49, 516
MwoI GCNNNNNNNGC 6 cut(s) 173, 233, 704, 832, 947, 1021
NciI CCSGG 1 cut(s) 99
NcoI CCATGG 1 cut(s) 1074
NdeI CATATG 1 cut(s) 583
NdeII GATC 2 cut(s) 72, 400
NlaIII CATG 7 cut(s) 38, 167, 553, 946, 995, 1015, 1078
NlaIV GGNNCC 3 cut(s) 209, 842, 1000
NmuCI GTSAC 2 cut(s) 325, 861
NsbI TGCGCA 1 cut(s) 962
NspI RCATGY 1 cut(s) 38
PaeI GCATGC 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 106
PfeI GAWTC 1 cut(s) 869
PfoI TCCNGGA 1 cut(s) 47
PkrI GCNGC 5 cut(s) 40, 445, 673, 709, 960
PleI GAGTC 1 cut(s) 341
PmaCI CACGTG 1 cut(s) 866
PmlI CACGTG 1 cut(s) 866
PpsI GAGTC 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 866
Psp6I CCWGG 2 cut(s) 47, 514
PspCI CACGTG 1 cut(s) 866
PspEI GGTNACC 1 cut(s) 690
PspGI CCWGG 2 cut(s) 47, 514
PspN4I GGNNCC 3 cut(s) 209, 842, 1000
PspOMI GGGCCC 1 cut(s) 840
PspPI GGNCC 5 cut(s) 225, 497, 840, 841, 1034
PsrI GAACNNNNNNTAC 2 cut(s) 280, 312
PstNI CAGNNNCTG 1 cut(s) 299
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 1 cut(s) 801
RsaNI GTAC 1 cut(s) 800
SaqAI TTAA 4 cut(s) 158, 392, 731, 746
SatI GCNGC 5 cut(s) 39, 444, 672, 708, 959
Sau3AI GATC 2 cut(s) 72, 400
Sau96I GGNCC 5 cut(s) 225, 497, 840, 841, 1034
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 3 cut(s) 49, 99, 516
SduI GDGCHC 3 cut(s) 99, 844, 977
SfaNI GCATC 3 cut(s) 344, 651, 1060
SinI GGWCC 1 cut(s) 497
SphI GCATGC 1 cut(s) 38
Sse9I AATT 2 cut(s) 103, 627
SsiI CCGC 6 cut(s) 380, 453, 488, 696, 708, 1095
SspMI CTAG 4 cut(s) 191, 534, 711, 1092
StyD4I CCNGG 3 cut(s) 47, 97, 514
StyI CCWWGG 4 cut(s) 182, 228, 1025, 1074
TaaI ACNGT 5 cut(s) 22, 301, 325, 331, 397
TaiI ACGT 1 cut(s) 868
TaqI TCGA 1 cut(s) 539
TasI AATT 2 cut(s) 103, 627
TauI GCSGC 1 cut(s) 710
TfiI GAWTC 1 cut(s) 869
Tru1I TTAA 4 cut(s) 158, 392, 731, 746
Tru9I TTAA 4 cut(s) 158, 392, 731, 746
TseFI GTSAC 2 cut(s) 325, 861
TseI GCWGC 4 cut(s) 38, 443, 671, 958
Tsp45I GTSAC 2 cut(s) 325, 861
TspDTI ATGAA 3 cut(s) 99, 556, 980
VneI GTGCAC 1 cut(s) 973
VpaK11BI GGWCC 1 cut(s) 497
XagI CCTNNNNNAGG 1 cut(s) 1029
XapI RAATTY 1 cut(s) 103
XceI RCATGY 1 cut(s) 38
XmnI GAANNNNTTC 1 cut(s) 106
XspI CTAG 4 cut(s) 191, 534, 711, 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.