Rh4AG333800

protein phosphatase 2C 15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002720
Physical Location & Seq
Forward (+)
64364651 .. 64368409
3759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG333800.1

Sequence Viewer

Length: 822 bp
ATGAGGGCACCAAGTATATACTTCACCAATATCATTGTGCATCATCTTGAGTTTCTTGAGTTCGTTATTCCAACTTTATCTATGCCACTTCAGCCTTTGCTTTGGCTAACACCATTTTTCTTTGCAAGCTGCGGGAGGACACTTGAACTTGAGACTGAAGCTAGGACTAGGAAAGATAGTAGTGTGGTAATTATGGGGTCTACAGAAGGGAGGCGTAATCATCATAACCTGGTGCCTCTTGCTGCATTGATCAGCAGAGAGATGAAGAATGAGAAGATGGAAAAACCGACTGTCAGATACGGGCATGCGGCTCAATCCAGGAAAGGGGAGGATTATTTTCTGATCAAGACTGATGGTCAGCGAGTGCCTGGAAATTCTTCATCAACATTTTCTGCATTTGCGATCTTTGACGGGCACAATGGAAACGCAGCAGCCATATATACAAGGGAGAACTTGTTAAATCATGTGTTGGGTGCTATTCCCAGGGGGCTAGGAAGGGAGGAGTGGCTCCAAGCCTTACCTCGGGCCTTGGTTGCAGGGTTTGTCAAGGCTGATAAGGATTTCCAAAGTAGAGGAGAAACTTCTGGAACAACAGCTACTGTTGTAATAGTTGATGGATGGACTGTGACAGTAGCATCAGTAGGAGACTCCCGTTGTATCTTAGATACTCAGGGTGGTGCAGTTTCCACTTTAACTGTTGATCATAGACTTGAAGAGAATGTAGAAGAGAGGGAGCGTGTTGCTGCAAGCGGCGGGGAAGTAGGGAGGTTGAGCATTGTTGGTGGTGCGGAGGTGAGGGCTCTTAAACCCTGTTTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

273

Amino Acids

29.97

Weight (kDa)

6.72

Isoelectric Point (pI)

34.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 125 - 261 1.6e-20 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 7, 232
AccI GTMKAC 1 cut(s) 200
AciI CCGC 5 cut(s) 132, 308, 750, 753, 788
AcsI RAATTY 1 cut(s) 373
AcuI CTGAAG 2 cut(s) 74, 177
AfiI CCNNNNNNNGG 2 cut(s) 324, 522
AgsI TTSAA 2 cut(s) 146, 713
AhdI GACNNNNNGTC 1 cut(s) 354
AjnI CCWGG 4 cut(s) 228, 317, 367, 482
AluBI AGCT 3 cut(s) 129, 161, 596
AluI AGCT 3 cut(s) 129, 161, 596
Alw26I GTCTC 2 cut(s) 146, 639
AlwNI CAGNNNCTG 1 cut(s) 599
Ama87I CYCGRG 1 cut(s) 522
AoxI GGCC 1 cut(s) 525
ApeKI GCWGC 5 cut(s) 129, 242, 428, 431, 743
ApoI RAATTY 1 cut(s) 373
Asp700I GAANNNNTTC 1 cut(s) 376
AspS9I GGNCC 1 cut(s) 525
AsuHPI GGTGA 2 cut(s) 16, 805
AvaI CYCGRG 1 cut(s) 522
BaeGI GKGCMC 2 cut(s) 10, 417
BanI GGYRCC 2 cut(s) 7, 232
BanII GRGCYC 1 cut(s) 802
BbvI GCAGC 5 cut(s) 116, 229, 440, 443, 730
BccI CCATC 4 cut(s) 271, 347, 608, 612
BciT130I CCWGG 4 cut(s) 230, 319, 369, 484
BclI TGATCA 3 cut(s) 249, 342, 700
BcoDI GTCTC 2 cut(s) 146, 639
BfaI CTAG 3 cut(s) 162, 168, 491
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 7 cut(s) 130, 243, 309, 429, 432, 744, 751
BlsI GCNGC 7 cut(s) 131, 244, 310, 430, 433, 745, 752
Bme1390I CCNGG 4 cut(s) 230, 319, 369, 484
BmeRI GACNNNNNGTC 1 cut(s) 354
BmeT110I CYCGRG 1 cut(s) 522
BmgT120I GGNCC 1 cut(s) 525
BmiI GGNNCC 3 cut(s) 9, 234, 509
BmrFI CCNGG 4 cut(s) 230, 319, 369, 484
BmsI GCATC 2 cut(s) 49, 644
BpuEI CTTGAG 3 cut(s) 68, 77, 170
BsaJI CCNNGG 4 cut(s) 482, 483, 521, 528
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 2 cut(s) 324, 522
BseBI CCWGG 4 cut(s) 230, 319, 369, 484
BseDI CCNNGG 4 cut(s) 482, 483, 521, 528
BseGI GGATG 1 cut(s) 623
BseLI CCNNNNNNNGG 2 cut(s) 324, 522
BseMII CTCAG 1 cut(s) 683
BseRI GAGGAG 2 cut(s) 515, 588
BseSI GKGCMC 2 cut(s) 10, 417
BseXI GCAGC 5 cut(s) 116, 229, 440, 443, 730
BsgI GTGCAG 1 cut(s) 699
BshFI GGCC 1 cut(s) 527
BshNI GGYRCC 2 cut(s) 7, 232
BsiHKCI CYCGRG 1 cut(s) 522
BslI CCNNNNNNNGG 2 cut(s) 324, 522
BsmAI GTCTC 2 cut(s) 146, 639
BsnI GGCC 1 cut(s) 527
BsoBI CYCGRG 1 cut(s) 522
Bsp1286I GDGCHC 3 cut(s) 10, 417, 802
Bsp143I GATC 4 cut(s) 249, 342, 402, 700
BspACI CCGC 5 cut(s) 132, 308, 750, 753, 788
BspANI GGCC 1 cut(s) 527
BspCNI CTCAG 1 cut(s) 682
BspLI GGNNCC 3 cut(s) 9, 234, 509
BspT107I GGYRCC 2 cut(s) 7, 232
BssECI CCNNGG 4 cut(s) 482, 483, 521, 528
BssMI GATC 4 cut(s) 249, 342, 402, 700
BssT1I CCWWGG 1 cut(s) 528
Bst2UI CCWGG 4 cut(s) 230, 319, 369, 484
Bst4CI ACNGT 5 cut(s) 292, 601, 625, 631, 697
Bst6I CTCTTC 2 cut(s) 708, 720
BstC8I GCNNGC 3 cut(s) 127, 306, 748
BstDEI CTNAG 2 cut(s) 661, 669
BstF5I GGATG 1 cut(s) 623
BstKTI GATC 4 cut(s) 252, 345, 405, 703
BstMAI GTCTC 2 cut(s) 146, 639
BstMBI GATC 4 cut(s) 249, 342, 402, 700
BstMWI GCNNNNNNNGC 2 cut(s) 91, 533
BstNI CCWGG 4 cut(s) 230, 319, 369, 484
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 4 cut(s) 228, 317, 367, 482
BstSFI CTRYAG 1 cut(s) 201
BstSLI GKGCMC 2 cut(s) 10, 417
BstV1I GCAGC 5 cut(s) 116, 229, 440, 443, 730
BsuRI GGCC 1 cut(s) 527
BtsCI GGATG 1 cut(s) 623
Cac8I GCNNGC 3 cut(s) 127, 306, 748
CaiI CAGNNNCTG 1 cut(s) 599
Cfr13I GGNCC 1 cut(s) 525
CsiI ACCWGGT 1 cut(s) 228
CviAII CATG 2 cut(s) 305, 464
DdeI CTNAG 2 cut(s) 661, 669
DpnI GATC 4 cut(s) 251, 344, 404, 702
DpnII GATC 4 cut(s) 249, 342, 402, 700
DriI GACNNNNNGTC 1 cut(s) 354
Eam1104I CTCTTC 2 cut(s) 708, 720
Eam1105I GACNNNNNGTC 1 cut(s) 354
EarI CTCTTC 2 cut(s) 708, 720
Eco130I CCWWGG 1 cut(s) 528
Eco24I GRGCYC 1 cut(s) 802
Eco57I CTGAAG 2 cut(s) 74, 177
Eco88I CYCGRG 1 cut(s) 522
EcoRII CCWGG 4 cut(s) 228, 317, 367, 482
EcoT14I CCWWGG 1 cut(s) 528
EcoT38I GRGCYC 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 2 cut(s) 308, 467
FatI CATG 2 cut(s) 304, 463
FauI CCCGC 2 cut(s) 125, 746
FbaI TGATCA 3 cut(s) 249, 342, 700
FblI GTMKAC 1 cut(s) 200
Fnu4HI GCNGC 7 cut(s) 130, 243, 309, 429, 432, 744, 751
FokI GGATG 1 cut(s) 630
FriOI GRGCYC 1 cut(s) 802
Fsp4HI GCNGC 7 cut(s) 130, 243, 309, 429, 432, 744, 751
FspBI CTAG 3 cut(s) 162, 168, 491
GluI GCNGC 7 cut(s) 130, 243, 309, 429, 432, 744, 751
HaeIII GGCC 1 cut(s) 527
Hin1II CATG 2 cut(s) 308, 467
HinfI GANTC 1 cut(s) 647
HphI GGTGA 2 cut(s) 16, 805
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 2 cut(s) 296, 342
Hpy188III TCNNGA 4 cut(s) 47, 56, 346, 585
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 2 cut(s) 200, 489
HpyCH4III ACNGT 5 cut(s) 292, 601, 625, 631, 697
HpyCH4V TGCA 7 cut(s) 40, 125, 245, 395, 536, 680, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 533
HpyF3I CTNAG 2 cut(s) 661, 669
Hsp92II CATG 2 cut(s) 308, 467
Ksp22I TGATCA 3 cut(s) 249, 342, 700
Kzo9I GATC 4 cut(s) 249, 342, 402, 700
LmnI GCTCC 2 cut(s) 513, 733
Lsp1109I GCAGC 5 cut(s) 116, 229, 440, 443, 730
LweI GCATC 2 cut(s) 49, 644
MabI ACCWGGT 1 cut(s) 228
MaeI CTAG 3 cut(s) 162, 168, 491
MaeIII GTNAC 1 cut(s) 625
MalI GATC 4 cut(s) 251, 344, 404, 702
MboI GATC 4 cut(s) 249, 342, 402, 700
MboII GAAGA 5 cut(s) 277, 286, 369, 725, 737
MhlI GDGCHC 3 cut(s) 10, 417, 802
MluCI AATT 2 cut(s) 189, 373
MlyI GAGTC 1 cut(s) 641
MmeI TCCRAC 1 cut(s) 95
MroXI GAANNNNTTC 1 cut(s) 376
MseI TTAA 3 cut(s) 458, 692, 804
MspR9I CCNGG 4 cut(s) 230, 319, 369, 484
MvaI CCWGG 4 cut(s) 230, 319, 369, 484
MwoI GCNNNNNNNGC 2 cut(s) 91, 533
NdeII GATC 4 cut(s) 249, 342, 402, 700
NlaIII CATG 2 cut(s) 308, 467
NlaIV GGNNCC 3 cut(s) 9, 234, 509
NmuCI GTSAC 1 cut(s) 625
NspI RCATGY 1 cut(s) 308
PaeI GCATGC 1 cut(s) 308
PasI CCCWGGG 1 cut(s) 483
PdmI GAANNNNTTC 1 cut(s) 376
PfoI TCCNGGA 1 cut(s) 317
PkrI GCNGC 7 cut(s) 131, 244, 310, 430, 433, 745, 752
PleI GAGTC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 641
Psp6I CCWGG 4 cut(s) 228, 317, 367, 482
PspGI CCWGG 4 cut(s) 228, 317, 367, 482
PspN4I GGNNCC 3 cut(s) 9, 234, 509
PspPI GGNCC 1 cut(s) 525
PsrI GAACNNNNNNTAC 2 cut(s) 580, 612
PstNI CAGNNNCTG 1 cut(s) 599
SaqAI TTAA 3 cut(s) 458, 692, 804
SatI GCNGC 7 cut(s) 130, 243, 309, 429, 432, 744, 751
Sau3AI GATC 4 cut(s) 249, 342, 402, 700
Sau96I GGNCC 1 cut(s) 525
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 4 cut(s) 230, 319, 369, 484
SduI GDGCHC 3 cut(s) 10, 417, 802
SetI ASST 7 cut(s) 131, 163, 231, 523, 598, 770, 795
SexAI ACCWGGT 1 cut(s) 228
SfaNI GCATC 2 cut(s) 49, 644
SfcI CTRYAG 1 cut(s) 201
SmlI CTYRAG 3 cut(s) 47, 56, 149
SmoI CTYRAG 3 cut(s) 47, 56, 149
SphI GCATGC 1 cut(s) 308
Sse9I AATT 2 cut(s) 189, 373
SsiI CCGC 5 cut(s) 132, 308, 750, 753, 788
SspMI CTAG 3 cut(s) 162, 168, 491
StyD4I CCNGG 4 cut(s) 228, 317, 367, 482
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 5 cut(s) 292, 601, 625, 631, 697
TasI AATT 2 cut(s) 189, 373
TauI GCSGC 2 cut(s) 311, 753
Tru1I TTAA 3 cut(s) 458, 692, 804
Tru9I TTAA 3 cut(s) 458, 692, 804
TseFI GTSAC 1 cut(s) 625
TseI GCWGC 5 cut(s) 129, 242, 428, 431, 743
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 2 cut(s) 278, 369
XapI RAATTY 1 cut(s) 373
XceI RCATGY 1 cut(s) 308
XmiI GTMKAC 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 376
XspI CTAG 3 cut(s) 162, 168, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.