Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Forward (+)

28955483 .. 28960234

Gene Structure 4752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77080.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCATTTTTGTTTTATCTCCAGCATTTCCAAGATCATTGATCGTTATGAAATACAACATGCTGATGAACTTAGAGCCTTAGATCTTGAAGAAAAAATTCAGAATTATCTTCCACACAAGGAGTTACTAGAAACAGTCCAAAGCAAGCTTGAAGAACCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTTGAGACTGCTCTGTCCGTAAGTAGAGCTAGGAAGGCAGAACTGATGATGGAGTATATCGAGTCCCTTAAAGAAAAGGAGAAATTGCTGAGAGAAGAGAACCAGGTTCTGGCTAGCCAGATGGGAAAGAATACGTTGCTGGCAACAGATGATGAGAGAGGAATGTTTCCGGGAAGTAGCTCCGGCAACAAAATACCGGAGACTCTCCCGCTGCTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009909 GO:0009910 GO:0010048 GO:0010219 GO:0010221 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

142

Amino Acids

16.22

Weight (kDa)

4.73

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 55	3.8e-22	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	92 - 147	4.1e-08	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	316
AciI	CCGC	1 cut(s)	416
AcsI	RAATTY	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	2 cut(s)	89, 152
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	3 cut(s)	148, 236, 387
AluI	AGCT	3 cut(s)	148, 236, 387
Alw26I	GTCTC	2 cut(s)	206, 401
AlwNI	CAGNNNCTG	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	418
ApoI	RAATTY	1 cut(s)	96
Asp700I	GAANNNNTTC	1 cut(s)	96
AsuC2I	CCSGG	1 cut(s)	378
AsuNHI	GCTAGC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	405
BccI	CCATC	2 cut(s)	250, 322
BciT130I	CCWGG	1 cut(s)	311
BcnI	CCSGG	1 cut(s)	378
BcoDI	GTCTC	2 cut(s)	206, 401
BfaI	CTAG	3 cut(s)	128, 237, 321
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	1 cut(s)	419
BlsI	GCNGC	1 cut(s)	420
Bme1390I	CCNGG	2 cut(s)	311, 378
BmrFI	CCNGG	2 cut(s)	311, 378
BmtI	GCTAGC	1 cut(s)	324
BpmI	CTGGAG	2 cut(s)	4, 218
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	378
BsaWI	WCCGGW	1 cut(s)	403
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	311
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	405
BsiSI	CCGG	3 cut(s)	377, 390, 404
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	206, 401
BsmFI	GGGAC	1 cut(s)	256
Bsp143I	GATC	3 cut(s)	33, 40, 82
BspACI	CCGC	1 cut(s)	416
BspCNI	CTCAG	1 cut(s)	288
BspOI	GCTAGC	1 cut(s)	324
BssMI	GATC	3 cut(s)	33, 40, 82
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	297
BstC8I	GCNNGC	3 cut(s)	146, 322, 348
BstDEI	CTNAG	3 cut(s)	71, 79, 296
BstKTI	GATC	3 cut(s)	36, 43, 85
BstMAI	GTCTC	2 cut(s)	206, 401
BstMBI	GATC	3 cut(s)	33, 40, 82
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	1 cut(s)	62
BstSCI	CCNGG	2 cut(s)	309, 376
BstV1I	GCAGC	1 cut(s)	405
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
Cac8I	GCNNGC	3 cut(s)	146, 322, 348
CaiI	CAGNNNCTG	1 cut(s)	316
CsiI	ACCWGGT	1 cut(s)	309
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	6 cut(s)	77, 148, 236, 320, 324, 387
CviKI_1	RGCY	6 cut(s)	77, 148, 236, 320, 324, 387
DdeI	CTNAG	3 cut(s)	71, 79, 296
DpnI	GATC	3 cut(s)	35, 42, 84
DpnII	GATC	3 cut(s)	33, 40, 82
DrdI	GACNNNNNNGTC	1 cut(s)	220
DseDI	GACNNNNNNGTC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	62
FaiI	YATR	3 cut(s)	48, 60, 264
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	1 cut(s)	58
FauI	CCCGC	1 cut(s)	423
Fnu4HI	GCNGC	1 cut(s)	419
Fsp4HI	GCNGC	1 cut(s)	419
FspBI	CTAG	3 cut(s)	128, 237, 321
GluI	GCNGC	1 cut(s)	419
GsuI	CTGGAG	2 cut(s)	4, 218
HapII	CCGG	3 cut(s)	377, 390, 404
Hin1II	CATG	1 cut(s)	62
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	3 cut(s)	182, 269, 409
HpaII	CCGG	3 cut(s)	377, 390, 404
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	2 cut(s)	86, 197
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	3 cut(s)	71, 79, 296
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	1 cut(s)	62
Kzo9I	GATC	3 cut(s)	33, 40, 82
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	1 cut(s)	405
MabI	ACCWGGT	1 cut(s)	309
MaeI	CTAG	3 cut(s)	128, 237, 321
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	123
MalI	GATC	3 cut(s)	35, 42, 84
MboI	GATC	3 cut(s)	33, 40, 82
MboII	GAAGA	4 cut(s)	101, 101, 164, 314
MflI	RGATCY	1 cut(s)	82
MluCI	AATT	5 cut(s)	96, 103, 189, 290, 424
MlyI	GAGTC	2 cut(s)	278, 403
MnlI	CCTC	2 cut(s)	193, 359
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	96
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	418
MspI	CCGG	3 cut(s)	377, 390, 404
MspR9I	CCNGG	2 cut(s)	311, 378
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	1 cut(s)	242
NciI	CCSGG	1 cut(s)	378
NdeII	GATC	3 cut(s)	33, 40, 82
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	1 cut(s)	62
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	316
PfoI	TCCNGGA	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	420
PleI	GAGTC	2 cut(s)	277, 403
PpsI	GAGTC	2 cut(s)	277, 403
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PstNI	CAGNNNCTG	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	419
Sau3AI	GATC	3 cut(s)	33, 40, 82
SchI	GAGTC	2 cut(s)	278, 403
ScrFI	CCNGG	2 cut(s)	311, 378
SetI	ASST	5 cut(s)	150, 238, 315, 344, 389
SexAI	ACCWGGT	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	5 cut(s)	96, 103, 189, 290, 424
SsiI	CCGC	1 cut(s)	416
SspMI	CTAG	3 cut(s)	128, 237, 321
StyD4I	CCNGG	2 cut(s)	309, 376
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	2 cut(s)	165, 267
TasI	AATT	5 cut(s)	96, 103, 189, 290, 424
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TseI	GCWGC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	63, 81
TspGWI	ACGGA	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	316
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	1 cut(s)	62
XmnI	GAANNNNTTC	1 cut(s)	96
XspI	CTAG	3 cut(s)	128, 237, 321
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.