Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Reverse (-)

48976 .. 62092

Gene Structure 13117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1001300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGGCGAGGGAAGGTGCAGCTGAAGCGAATCGACGACAAGATCAGGCGGCAAGTGACCTTTTCCAAGCGGAGAAGCGGGCTGATCAAGAAGGCACGTGAGCTGTCGGTGCTCTGCGGGGTGGAGGTCGGCCTTGTCATCTTCTCCACAAAGGGGAGGCTCTACGAGTTCTGTAGCGGCTCGAGTTTTGCAAAGCTTCTGGAGCGTTACCAGCAACATAATGCTGAGGAAATTGCTGCTTCCAAGAATGCTGGTGATACTGACAAGAAGCATAATTTGGAATGCAGTGGTCTCCGTACAGGCGCTAGCCGATCTCTGAAAATGATTCAAAGTGATATAGAAGCACAAGACCTCGATAATCTAGATGTTCCAGAGCTCACCAAGCTTGAGGAGGAATTGGATGCAGTTTTAAGACAAACAAGATCAAGAAAGACACAGCTGATGATGGAAACCCTTACAGCTCTTATCGAGCAGGAAAAACAGCTGAAAGAAGAGAAGCTTCTCTTGGAAAATGAGATTGCAGCAAAGGAGCAGCAGATCAGGGACCGAGCTGCCGACGAGGAACCGGTTCAGCAGAACACTTCCGCCGCTAATCACACCACCACCACCACCTCCAACAACAACAACAACTGCAGCAGCGACGACGATGTTCCGGCCACCATACTTCGTTTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

226

Amino Acids

25.35

Weight (kDa)

6.37

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.1e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	106 - 173	1.5e-09	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	49, 70, 78, 117, 177, 585, 588
AcoI	YGGCCR	1 cut(s)	654
AcuI	CTGAAG	1 cut(s)	44
AcvI	CACGTG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgeI	ACCGGT	1 cut(s)	565
AgsI	TTSAA	1 cut(s)	329
AjuI	GAANNNNNNNTTGG	4 cut(s)	260, 292, 488, 520
Alw21I	GWGCWC	2 cut(s)	114, 378
Alw26I	GTCTC	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	2 cut(s)	130, 654
ApeKI	GCWGC	7 cut(s)	19, 236, 521, 532, 551, 633, 636
AsiGI	ACCGGT	1 cut(s)	565
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	544
AsuHPI	GGTGA	2 cut(s)	266, 370
AsuNHI	GCTAGC	1 cut(s)	305
AvaI	CYCGRG	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	378
BbrPI	CACGTG	1 cut(s)	98
Bbv12I	GWGCWC	2 cut(s)	114, 378
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	7 cut(s)	31, 223, 533, 538, 544, 645, 648
BccI	CCATC	1 cut(s)	439
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	2 cut(s)	306, 362
BfmI	CTRYAG	2 cut(s)	172, 631
BfoI	RGCGCY	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	544
BmeT110I	CYCGRG	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	544
BmiI	GGNNCC	2 cut(s)	545, 564
BmsI	GCATC	1 cut(s)	391
BmtI	GCTAGC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	407
BsaAI	YACGTR	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	296
BsaWI	WCCGGW	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	565
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	216
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	7 cut(s)	31, 223, 533, 538, 544, 645, 648
BsgI	GTGCAG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	132, 656
BshTI	ACCGGT	1 cut(s)	565
BsiHKAI	GWGCWC	2 cut(s)	114, 378
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	566, 653
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	557
BsmI	GAATGC	2 cut(s)	253, 287
BsnI	GGCC	2 cut(s)	132, 656
Bso31I	GGTCTC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	114, 378
Bsp143I	GATC	5 cut(s)	42, 84, 311, 422, 537
BspACI	CCGC	7 cut(s)	49, 70, 78, 117, 177, 585, 588
BspANI	GGCC	2 cut(s)	132, 656
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	545, 564
BspMAI	CTGCAG	1 cut(s)	635
BspOI	GCTAGC	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	565
BssAI	RCCGGY	1 cut(s)	565
BssMI	GATC	5 cut(s)	42, 84, 311, 422, 537
Bst6I	CTCTTC	1 cut(s)	486
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	80, 307
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	406
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	5 cut(s)	45, 87, 314, 425, 540
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	5 cut(s)	42, 84, 311, 422, 537
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 109, 202, 211, 382
BstSFI	CTRYAG	2 cut(s)	172, 631
BstV1I	GCAGC	7 cut(s)	31, 223, 533, 538, 544, 645, 648
BsuRI	GGCC	2 cut(s)	132, 656
BtsCI	GGATG	1 cut(s)	406
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	2 cut(s)	80, 307
CfoI	GCGC	1 cut(s)	305
Cfr10I	RCCGGY	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	544
Csp6I	GTAC	1 cut(s)	297
CspAI	ACCGGT	1 cut(s)	565
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	5 cut(s)	44, 86, 313, 424, 539
DpnII	GATC	5 cut(s)	42, 84, 311, 422, 537
EaeI	YGGCCR	1 cut(s)	654
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
EciI	GGCGGA	1 cut(s)	574
Ecl136II	GAGCTC	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	544
Eco53kI	GAGCTC	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	44
Eco72I	CACGTG	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	378
FaiI	YATR	4 cut(s)	219, 273, 338, 662
FalI	AAGNNNNNCTT	4 cut(s)	483, 515, 488, 520
FaqI	GGGAC	1 cut(s)	557
FauI	CCCGC	2 cut(s)	71, 110
FbaI	TGATCA	1 cut(s)	84
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	378
FspBI	CTAG	2 cut(s)	306, 362
GlaI	GCGC	1 cut(s)	304
GsuI	CTGGAG	1 cut(s)	221
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	132, 656
HapII	CCGG	2 cut(s)	566, 653
HhaI	GCGC	1 cut(s)	305
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HindIII	AAGCTT	3 cut(s)	194, 383, 497
HinfI	GANTC	2 cut(s)	30, 325
HpaII	CCGG	2 cut(s)	566, 653
HphI	GGTGA	2 cut(s)	266, 370
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	5 cut(s)	88, 200, 362, 371, 426
Hpy99I	CGWCG	4 cut(s)	38, 560, 644, 647
HpyAV	CCTTC	2 cut(s)	7, 85
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	6 cut(s)	19, 191, 285, 404, 521, 633
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 109, 202, 211, 382
HpyF3I	CTNAG	1 cut(s)	225
HpySE526I	ACGT	1 cut(s)	97
HspAI	GCGC	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	5 cut(s)	42, 84, 311, 422, 537
LmnI	GCTCC	2 cut(s)	202, 529
Lsp1109I	GCAGC	7 cut(s)	31, 223, 533, 538, 544, 645, 648
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	306, 362
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	2 cut(s)	55, 206
MalI	GATC	5 cut(s)	44, 86, 313, 424, 539
MboI	GATC	5 cut(s)	42, 84, 311, 422, 537
MboII	GAAGA	2 cut(s)	133, 503
MhlI	GDGCHC	2 cut(s)	114, 378
MluCI	AATT	3 cut(s)	231, 274, 395
MmeI	TCCRAC	1 cut(s)	639
MnlI	CCTC	8 cut(s)	118, 150, 220, 362, 382, 385, 553, 622
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	1 cut(s)	410
MspA1I	CMGCKG	3 cut(s)	22, 439, 484
MspI	CCGG	2 cut(s)	566, 653
Mva1269I	GAATGC	2 cut(s)	253, 287
MwoI	GCNNNNNNNGC	5 cut(s)	25, 109, 202, 211, 382
NdeII	GATC	5 cut(s)	42, 84, 311, 422, 537
NheI	GCTAGC	1 cut(s)	305
NlaIV	GGNNCC	2 cut(s)	545, 564
NmuCI	GTSAC	1 cut(s)	55
PaeR7I	CTCGAG	1 cut(s)	181
PctI	GAATGC	2 cut(s)	253, 287
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	2 cut(s)	30, 325
PinAI	ACCGGT	1 cut(s)	565
PmaCI	CACGTG	1 cut(s)	98
PmlI	CACGTG	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	378
PspCI	CACGTG	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	545, 564
PspPI	GGNCC	1 cut(s)	544
PspXI	VCTCGAGB	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	635
PvuII	CAGCTG	3 cut(s)	22, 439, 484
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SacI	GAGCTC	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	410
Sau3AI	GATC	5 cut(s)	42, 84, 311, 422, 537
Sau96I	GGNCC	1 cut(s)	544
SduI	GDGCHC	2 cut(s)	114, 378
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	2 cut(s)	172, 631
Sfr274I	CTCGAG	1 cut(s)	181
SinI	GGWCC	1 cut(s)	544
SlaI	CTCGAG	1 cut(s)	181
SmlI	CTYRAG	2 cut(s)	181, 386
SmoI	CTYRAG	2 cut(s)	181, 386
Sse9I	AATT	3 cut(s)	231, 274, 395
SsiI	CCGC	7 cut(s)	49, 70, 78, 117, 177, 585, 588
SspMI	CTAG	2 cut(s)	306, 362
SstI	GAGCTC	1 cut(s)	378
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	4 cut(s)	33, 182, 354, 468
TaqII	GACCGA	1 cut(s)	561
TasI	AATT	3 cut(s)	231, 274, 395
TauI	GCSGC	3 cut(s)	52, 180, 590
TfiI	GAWTC	2 cut(s)	30, 325
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	7 cut(s)	19, 236, 521, 532, 551, 633, 636
Tsp45I	GTSAC	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	292
VpaK11BI	GGWCC	1 cut(s)	544
XbaI	TCTAGA	1 cut(s)	361
XhoI	CTCGAG	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	2 cut(s)	306, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.