Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Reverse (-)

81131927 .. 81137981

Gene Structure 6055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG641500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTTGAGATTTTGAGTCTACCTACCTATTTGGACATTGAGATTAGTTCGAAACTCAAAAAGATACATAATGAGGAAGAAGTTGCTGCTCCCAAGAATGCCAAGAAACATAATTTGGAATTGACTGGTAATGGCACATGCACTAAGAAATCCCTGAAAATGATTCAAAGTGAACTAGAAGCACAGAACATTGAAAATCTGGATGTGACAGAGCTCACTCAACTTGAGAAGCAACTGGATGCTATATTAAGGCAAACAAGATCAAGAAAGATGCAGCTCATGATGGAAACAATAACAGCTCTCATTGAGAAGGGAAAGAAGCTGGGAGAAGAGAAGGATCTCATGGAAAAGGAGATTGCAGCACTGATGGTGGAGAAGGCGAACCAGCAGGAACAGCCAACTGCGATTGCTGCTGCTAATGATAATCATGATGATGAGGAAATGGAAGGAGAACGAGAAGGAGAAGCAGATGAGCGCAGCAGTTGTGCCCACACCAAACATCCCGTGCTTAATTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

173

Amino Acids

19.59

Weight (kDa)

5.01

Isoelectric Point (pI)

58.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	52 - 119	5e-10	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	19
AclWI	GGATC	1 cut(s)	345
AgsI	TTSAA	2 cut(s)	167, 194
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	4 cut(s)	214, 277, 299, 322
AluI	AGCT	4 cut(s)	214, 277, 299, 322
Alw21I	GWGCWC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	345
ApeKI	GCWGC	6 cut(s)	86, 274, 359, 410, 413, 477
AspLEI	GCGC	1 cut(s)	477
AsuII	TTCGAA	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	6 cut(s)	73, 286, 371, 397, 400, 489
BccI	CCATC	2 cut(s)	277, 361
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	6 cut(s)	87, 275, 360, 411, 414, 478
BlsI	GCNGC	6 cut(s)	88, 276, 361, 412, 415, 479
BmsI	GCATC	2 cut(s)	229, 261
Bpu14I	TTCGAA	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	245
Bse1I	ACTGG	2 cut(s)	130, 240
BseGI	GGATG	3 cut(s)	208, 244, 499
BseNI	ACTGG	2 cut(s)	130, 240
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	6 cut(s)	73, 286, 371, 397, 400, 489
BseYI	CCCAGC	1 cut(s)	322
BsiHKAI	GWGCWC	1 cut(s)	216
BsmI	GAATGC	1 cut(s)	103
Bsp119I	TTCGAA	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	216, 490
Bsp143I	GATC	2 cut(s)	260, 337
BspHI	TCATGA	2 cut(s)	279, 427
BspPI	GGATC	1 cut(s)	345
BspT104I	TTCGAA	1 cut(s)	50
BsrI	ACTGG	2 cut(s)	130, 240
BssMI	GATC	2 cut(s)	260, 337
Bst6I	CTCTTC	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	3 cut(s)	208, 244, 499
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	2 cut(s)	263, 340
BstMBI	GATC	2 cut(s)	260, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 410
BstNSI	RCATGY	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	490
BstV1I	GCAGC	6 cut(s)	73, 286, 371, 397, 400, 489
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BtsCI	GGATG	3 cut(s)	208, 244, 499
BtsIMutI	CAGTG	1 cut(s)	362
CciI	TCATGA	2 cut(s)	279, 427
CfoI	GCGC	1 cut(s)	477
CviAII	CATG	4 cut(s)	138, 280, 343, 428
CviJI	RGCY	5 cut(s)	214, 277, 299, 322, 397
CviKI_1	RGCY	5 cut(s)	214, 277, 299, 322, 397
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	2 cut(s)	262, 339
DpnII	GATC	2 cut(s)	260, 337
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	4 cut(s)	141, 283, 346, 431
FaiI	YATR	7 cut(s)	69, 111, 139, 245, 281, 344, 429
FatI	CATG	4 cut(s)	137, 279, 342, 427
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	6 cut(s)	87, 275, 360, 411, 414, 478
FokI	GGATG	3 cut(s)	215, 251, 486
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	6 cut(s)	87, 275, 360, 411, 414, 478
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	6 cut(s)	87, 275, 360, 411, 414, 478
GsaI	CCCAGC	1 cut(s)	326
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	4 cut(s)	141, 283, 346, 431
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	16, 163
Hpy166II	GTNNAC	2 cut(s)	20, 173
Hpy188III	TCNNGA	4 cut(s)	200, 264, 280, 428
Hpy8I	GTNNAC	2 cut(s)	20, 173
HpyAV	CCTTC	5 cut(s)	304, 328, 370, 440, 452
HpyCH4V	TGCA	3 cut(s)	141, 274, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 410
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	4 cut(s)	141, 283, 346, 431
HspAI	GCGC	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	260, 337
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	7 cut(s)	111, 167, 185, 221, 308, 374, 398
Lsp1109I	GCAGC	6 cut(s)	73, 286, 371, 397, 400, 489
LweI	GCATC	2 cut(s)	229, 261
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	2 cut(s)	262, 339
MboI	GATC	2 cut(s)	260, 337
MboII	GAAGA	2 cut(s)	89, 341
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	2 cut(s)	216, 490
MluCI	AATT	3 cut(s)	112, 119, 511
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	2 cut(s)	67, 430
MseI	TTAA	2 cut(s)	248, 510
MslI	CAYNNNNRTG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	394, 410
NdeII	GATC	2 cut(s)	260, 337
NlaIII	CATG	4 cut(s)	141, 283, 346, 431
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	141
NspV	TTCGAA	1 cut(s)	50
PagI	TCATGA	2 cut(s)	279, 427
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	6 cut(s)	88, 276, 361, 412, 415, 479
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	248, 510
SatI	GCNGC	6 cut(s)	87, 275, 360, 411, 414, 478
Sau3AI	GATC	2 cut(s)	260, 337
SchI	GAGTC	1 cut(s)	25
SduI	GDGCHC	2 cut(s)	216, 490
SetI	ASST	6 cut(s)	25, 29, 216, 279, 301, 324
SfaNI	GCATC	2 cut(s)	229, 261
SfuI	TTCGAA	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	3 cut(s)	112, 119, 511
SspMI	CTAG	1 cut(s)	176
SstI	GAGCTC	1 cut(s)	216
TaqI	TCGA	1 cut(s)	50
TasI	AATT	3 cut(s)	112, 119, 511
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	248, 510
Tru9I	TTAA	2 cut(s)	248, 510
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	6 cut(s)	86, 274, 359, 410, 413, 477
Tsp45I	GTSAC	1 cut(s)	205
TspRI	CASTG	1 cut(s)	369
XceI	RCATGY	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	19
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.