Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Forward (+)

25982254 .. 25986435

Gene Structure 4182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65050.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGGTAGAAAAAAAGTCGAGATCAAGCGAATCGAGAACAAAAGTAGTCGACAAGTCACTTTCTCCAAACGACGCAATGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTGTTCTCGTCGTCTCCGGCTCCGGAAAACTCTACAAGTCTGCCTCCGGTGACAACATGTCAAAGATCATTGATCGTTACGAAATACATCATGCTGATGAACTTGAAGCCTTAGATCTTGCAGAAAAAACTCGGAATTATCTGCCACTCAAAGAGTTACTAGAAATAGTCCAAAGCAAGCTTGAAGAATCAAATGTCGATAATGCAAGTGTGGATACTTTAATTTCTCTGGAGGAACAGCTCGAGACTGCTCTGTCCGTAACTAGAGCTAGGAAGACAGAACTAATGATGGGGGAAGTGAAGTCCCTTCAAAAAACGGTGGGGAAGAAGACGTTTCTGGTTATAGAAGGTGACAGAGGAATGTCATGGGAAAATGGCTCCGGCAACAAAGTACGGGAGACTCTTCCGCTGCTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009909 GO:0009910 GO:0010048 GO:0010219 GO:0010221 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

182

Amino Acids

20.43

Weight (kDa)

9.1

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	47 - 113	3.9e-11	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	78, 382
AccI	GTMKAC	1 cut(s)	49
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	1 cut(s)	536
AfaI	GTAC	1 cut(s)	522
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	4 cut(s)	108, 236, 314, 440
AhdI	GACNNNNNGTC	1 cut(s)	187
AluBI	AGCT	4 cut(s)	95, 310, 370, 398
AluI	AGCT	4 cut(s)	95, 310, 370, 398
Alw26I	GTCTC	4 cut(s)	86, 148, 368, 521
Ama87I	CYCGRG	1 cut(s)	371
Aor13HI	TCCGGA	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	538
AsuHPI	GGTGA	2 cut(s)	191, 491
AvaI	CYCGRG	1 cut(s)	371
BbsI	GAAGAC	2 cut(s)	410, 464
BbvI	GCAGC	1 cut(s)	525
BccI	CCATC	2 cut(s)	134, 412
BciVI	GTATCC	1 cut(s)	337
BcoDI	GTCTC	4 cut(s)	86, 148, 368, 521
BfaI	CTAG	3 cut(s)	290, 393, 399
BfuI	GTATCC	1 cut(s)	337
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	1 cut(s)	539
BlsI	GCNGC	1 cut(s)	540
BmeRI	GACNNNNNGTC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	151, 508
BpiI	GAAGAC	2 cut(s)	410, 464
BpmI	CTGGAG	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	86
BsaWI	WCCGGW	2 cut(s)	152, 176
Bse3DI	GCAATG	1 cut(s)	82
BseAI	TCCGGA	1 cut(s)	152
BseMI	GCAATG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	525
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	4 cut(s)	147, 153, 177, 510
BslFI	GGGAC	1 cut(s)	418
BsmAI	GTCTC	4 cut(s)	86, 148, 368, 521
BsmBI	CGTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	418
Bso31I	GGTCTC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	371
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	4 cut(s)	21, 195, 202, 244
BspACI	CCGC	1 cut(s)	536
BspEI	TCCGGA	1 cut(s)	152
BspLI	GGNNCC	2 cut(s)	151, 508
BspTNI	GGTCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	82
BssMI	GATC	4 cut(s)	21, 195, 202, 244
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	241
BstKTI	GATC	4 cut(s)	24, 198, 205, 247
BstMAI	GTCTC	4 cut(s)	86, 148, 368, 521
BstMBI	GATC	4 cut(s)	21, 195, 202, 244
BstNSI	RCATGY	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	525
BstV2I	GAAGAC	2 cut(s)	410, 464
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuI	GTATCC	1 cut(s)	337
BtgZI	GCGATG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	308
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	3 cut(s)	187, 221, 495
CviJI	RGCY	7 cut(s)	95, 150, 239, 310, 370, 398, 507
CviKI_1	RGCY	7 cut(s)	95, 150, 239, 310, 370, 398, 507
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	1 cut(s)	241
DpnI	GATC	4 cut(s)	23, 197, 204, 246
DpnII	GATC	4 cut(s)	21, 195, 202, 244
DrdI	GACNNNNNNGTC	2 cut(s)	78, 382
DriI	GACNNNNNGTC	1 cut(s)	187
DseDI	GACNNNNNNGTC	2 cut(s)	78, 382
Eam1104I	CTCTTC	1 cut(s)	537
Eam1105I	GACNNNNNGTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	371
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	3 cut(s)	190, 224, 498
FaiI	YATR	4 cut(s)	188, 222, 473, 496
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	3 cut(s)	186, 220, 494
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	539
Fsp4HI	GCNGC	1 cut(s)	539
FspBI	CTAG	3 cut(s)	290, 393, 399
GluI	GCNGC	1 cut(s)	539
GsuI	CTGGAG	1 cut(s)	380
HapII	CCGG	4 cut(s)	147, 153, 177, 510
HgaI	GACGC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	190, 224, 498
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	4 cut(s)	30, 119, 317, 529
HpaII	CCGG	4 cut(s)	147, 153, 177, 510
HphI	GGTGA	2 cut(s)	191, 491
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	6 cut(s)	19, 34, 88, 153, 359, 373
Hpy8I	GTNNAC	1 cut(s)	50
Hpy99I	CGWCG	2 cut(s)	75, 143
HpyAV	CCTTC	2 cut(s)	446, 470
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	2 cut(s)	251, 335
HpyF3I	CTNAG	1 cut(s)	241
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	3 cut(s)	190, 224, 498
Kpn2I	TCCGGA	1 cut(s)	152
Kzo9I	GATC	4 cut(s)	21, 195, 202, 244
LmnI	GCTCC	2 cut(s)	155, 512
LpnPI	CCDG	6 cut(s)	160, 166, 190, 344, 452, 523
Lsp1109I	GCAGC	1 cut(s)	525
MaeI	CTAG	3 cut(s)	290, 393, 399
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	6 cut(s)	55, 179, 206, 285, 388, 479
MalI	GATC	4 cut(s)	23, 197, 204, 246
MboI	GATC	4 cut(s)	21, 195, 202, 244
MboII	GAAGA	6 cut(s)	114, 326, 415, 466, 469, 524
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	3 cut(s)	108, 265, 351
MlyI	GAGTC	1 cut(s)	523
MnlI	CCTC	3 cut(s)	184, 355, 479
MroI	TCCGGA	1 cut(s)	152
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	225
MspA1I	CMGCKG	1 cut(s)	538
MspI	CCGG	4 cut(s)	147, 153, 177, 510
NdeII	GATC	4 cut(s)	21, 195, 202, 244
NlaIII	CATG	3 cut(s)	190, 224, 498
NlaIV	GGNNCC	2 cut(s)	151, 508
NmuCI	GTSAC	3 cut(s)	55, 179, 479
NspI	RCATGY	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	371
PciI	ACATGT	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	3 cut(s)	30, 119, 317
PkrI	GCNGC	1 cut(s)	540
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
PscI	ACATGT	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	151, 508
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
RseI	CAYNNNNRTG	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	350
SatI	GCNGC	1 cut(s)	539
Sau3AI	GATC	4 cut(s)	21, 195, 202, 244
SchI	GAGTC	1 cut(s)	523
SetI	ASST	6 cut(s)	97, 312, 372, 400, 464, 481
Sfr274I	CTCGAG	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	371, 542
SmoI	CTYRAG	2 cut(s)	371, 542
Sse9I	AATT	3 cut(s)	108, 265, 351
SsiI	CCGC	1 cut(s)	536
SspMI	CTAG	3 cut(s)	290, 393, 399
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	7 cut(s)	18, 33, 49, 87, 97, 327, 372
TasI	AATT	3 cut(s)	108, 265, 351
TfiI	GAWTC	3 cut(s)	30, 119, 317
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TseFI	GTSAC	3 cut(s)	55, 179, 479
TseI	GCWGC	1 cut(s)	538
Tsp45I	GTSAC	3 cut(s)	55, 179, 479
TspDTI	ATGAA	1 cut(s)	243
TspGWI	ACGGA	1 cut(s)	376
XceI	RCATGY	1 cut(s)	190
XhoI	CTCGAG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	49
XspI	CTAG	3 cut(s)	290, 393, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.