Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Forward (+)

25997504 .. 26002619

Gene Structure 5116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65080.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

GATCTTGAAGACAAAACTCAGGATTATCTTTCACACAAGGAGTTACTAGAAATAGTTCAAAGAAAGATTGAAGAAGCAAAAGGGGATAATGTAAGTATAGAATCTCTAATTTCCATGGAAGAGCAGCTCAAGAGTGCTCTGTCTGTAATTAGAGCTAGGAAGACAGAGTTATTGATGGAGCTTGTGAAGAACCTTCAGGATAAGGAGAAGTTGCTGAAAGAAAAGAACAAGGTTCTAGCTAGCGAGGTGGGGAAGCTGAAGAAAATTTTGGAAACAGGGGATGAAAGAGCAGTAATGTCACCGGAAAATAGCTCTGGCCACAGCCCACCGGAGACTCTCCCGCTTCTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009909 GO:0009910 GO:0010048 GO:0010219 GO:0010221 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

117

Amino Acids

13.24

Weight (kDa)

5.52

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	17 - 62	7.5e-22	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	101 - 162	1.6e-07	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	264
AcuI	CTGAAG	2 cut(s)	179, 278
AgsI	TTSAA	3 cut(s)	8, 59, 71
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	6 cut(s)	127, 155, 181, 239, 256, 312
AluI	AGCT	6 cut(s)	127, 155, 181, 239, 256, 312
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	326
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	1 cut(s)	264
Asp700I	GAANNNNTTC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	291
AsuNHI	GCTAGC	1 cut(s)	239
BalI	TGGCCA	1 cut(s)	318
BbsI	GAAGAC	2 cut(s)	15, 167
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	4 cut(s)	47, 156, 236, 240
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
BmtI	GCTAGC	1 cut(s)	243
BpiI	GAAGAC	2 cut(s)	15, 167
BpuEI	CTTGAG	2 cut(s)	113, 332
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	2 cut(s)	301, 328
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	136
BshFI	GGCC	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	302, 329
BsmAI	GTCTC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp19I	CCATGG	1 cut(s)	114
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	243
BspQI	GCTCTTC	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	114
BssT1I	CCWWGG	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	4
BstMAI	GTCTC	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	136
BstV2I	GAAGAC	2 cut(s)	15, 167
BsuRI	GGCC	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	241
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	8 cut(s)	127, 155, 181, 239, 256, 312, 318, 324
CviKI_1	RGCY	8 cut(s)	127, 155, 181, 239, 256, 312, 318, 324
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	114
Eco57I	CTGAAG	2 cut(s)	179, 278
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	98, 116
FatI	CATG	1 cut(s)	114
FauI	CCCGC	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	4 cut(s)	47, 156, 236, 240
GluI	GCNGC	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	2 cut(s)	302, 329
Hin1II	CATG	1 cut(s)	118
HinfI	GANTC	2 cut(s)	101, 334
HpaII	CCGG	2 cut(s)	302, 329
HphI	GGTGA	1 cut(s)	291
Hpy188III	TCNNGA	4 cut(s)	5, 20, 130, 197
HpyAV	CCTTC	1 cut(s)	203
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	118
LguI	GCTCTTC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	6 cut(s)	5, 182, 261, 300, 315, 342
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	4 cut(s)	47, 156, 236, 240
MaeIII	GTNAC	2 cut(s)	42, 297
MalI	GATC	1 cut(s)	3
MboII	GAAGA	6 cut(s)	20, 83, 131, 172, 199, 271
MhlI	GDGCHC	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	3 cut(s)	108, 147, 264
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	328
MnlI	CCTC	1 cut(s)	238
Mox20I	TGGCCA	1 cut(s)	318
MroXI	GAANNNNTTC	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	318
MspI	CCGG	2 cut(s)	302, 329
NcoI	CCATGG	1 cut(s)	114
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
SapI	GCTCTTC	1 cut(s)	114
SatI	GCNGC	1 cut(s)	125
SchI	GAGTC	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	9 cut(s)	129, 157, 183, 195, 234, 241, 249, 258, 314
SmlI	CTYRAG	2 cut(s)	128, 347
SmoI	CTYRAG	2 cut(s)	128, 347
Sse9I	AATT	3 cut(s)	108, 147, 264
SsiI	CCGC	1 cut(s)	341
SspMI	CTAG	4 cut(s)	47, 156, 236, 240
StyI	CCWWGG	1 cut(s)	114
TasI	AATT	3 cut(s)	108, 147, 264
TfiI	GAWTC	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	297
TseI	GCWGC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	297
TspDTI	ATGAA	1 cut(s)	297
XapI	RAATTY	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	4 cut(s)	47, 156, 236, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.