Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Reverse (-)

26830986 .. 26841208

Gene Structure 10223 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G307800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGACGAGGGAAGGTGCAACTGAAGCGAATCGATGACAAGATCCGGCGTCAAGTGACTTTCTCCAAGCGAAGGAGCGGCCTCATCAAGAAGGCTCGCGAGCTCTCTGTGCTCTGCAGCGTGGAGGTGGGCCTTATCATCTTCTCCGCCAAGGGAAGGCTCTACGAGTTCTGTAGCGGCGAGAGATTCCAACTCGTGGAGCTCAACACCCTCCACAAGGAGGAAAAAAACCTCGTTCTTTTTGCCAATTTAGGAAAGGTTCTTGAGCGTTACCAGATACATAATGATGAAGAAAATGCTGCTCCCAAGAGTGGTGGTGGTACTGGCAAGAAGAATCCTTCAGAATGGAATGGCCTCTGCGCAGGCCCTAACCGGTCACTGAAAACGATTCAAAGTGAGTTGGAAGCACAAAACATTGAAAATCTGGATGTGACAGAGCTCACCCAACTTGAGAAGCAATTGGATACACTATTAAGACAAACAAGATCAAGAAAGACACAGCTGATGATGGACAGCCTAACAGCTCTTATTGAGAAGGAAAAACAACTGCAAGAAGAGAAGCTTCTCATGGAAAAGGAGATTGCAGAGCTGAAGGAGCAGAAGAACAAGGAACAAGCTGAGGAAGCGGATCAGCAGAGTTGTTCTGCTAACAACAACAACAATAGCGATGACAATGCTCCTCCCAGACAGACGATGCTCCATTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

237

Amino Acids

26.93

Weight (kDa)

8.26

Isoelectric Point (pI)

51.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	361
AccB7I	CCANNNNNTGG	1 cut(s)	196
AccBSI	CCGCTC	1 cut(s)	78
AccII	CGCG	1 cut(s)	99
AciI	CCGC	4 cut(s)	78, 147, 177, 626
AclWI	GGATC	2 cut(s)	37, 636
AcuI	CTGAAG	3 cut(s)	44, 324, 611
AcyI	GRCGYC	1 cut(s)	49
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	6 cut(s)	72, 156, 196, 217, 220, 311
AgeI	ACCGGT	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	392, 419
AluBI	AGCT	8 cut(s)	103, 202, 439, 502, 524, 562, 589, 617
AluI	AGCT	8 cut(s)	103, 202, 439, 502, 524, 562, 589, 617
Alw21I	GWGCWC	4 cut(s)	105, 114, 204, 441
AlwI	GGATC	2 cut(s)	37, 636
AoxI	GGCC	4 cut(s)	79, 130, 352, 364
ApeKI	GCWGC	2 cut(s)	117, 299
AsiGI	ACCGGT	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	130, 365
AsuHPI	GGTGA	1 cut(s)	433
BanII	GRGCYC	3 cut(s)	105, 204, 441
BauI	CACGAG	1 cut(s)	194
Bbv12I	GWGCWC	4 cut(s)	105, 114, 204, 441
BbvCI	CCTCAGC	1 cut(s)	618
BbvI	GCAGC	2 cut(s)	129, 286
BccI	CCATC	1 cut(s)	502
BcgI	CGANNNNNNTGC	2 cut(s)	656, 690
BciVI	GTATCC	1 cut(s)	457
BfmI	CTRYAG	2 cut(s)	115, 172
BfuI	GTATCC	1 cut(s)	457
BisI	GCNGC	4 cut(s)	79, 118, 178, 300
BlsI	GCNGC	4 cut(s)	80, 119, 179, 301
BmgT120I	GGNCC	2 cut(s)	130, 365
BmsI	GCATC	1 cut(s)	684
Bpu10I	CCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	2 cut(s)	284, 470
Bsa29I	ATCGAT	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	6 cut(s)	72, 156, 196, 217, 220, 311
Bse118I	RCCGGY	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	6 cut(s)	72, 156, 196, 217, 220, 311
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	669
BseXI	GCAGC	2 cut(s)	129, 286
Bsh1236I	CGCG	1 cut(s)	99
BshFI	GGCC	4 cut(s)	81, 132, 354, 366
BshTI	ACCGGT	1 cut(s)	372
BshVI	ATCGAT	1 cut(s)	33
BsiHKAI	GWGCWC	4 cut(s)	105, 114, 204, 441
BsiSI	CCGG	2 cut(s)	46, 373
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	6 cut(s)	72, 156, 196, 217, 220, 311
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	4 cut(s)	81, 132, 354, 366
Bsp1286I	GDGCHC	4 cut(s)	105, 114, 204, 441
Bsp143I	GATC	3 cut(s)	42, 485, 628
Bsp68I	TCGCGA	1 cut(s)	99
BspACI	CCGC	4 cut(s)	78, 147, 177, 626
BspANI	GGCC	4 cut(s)	81, 132, 354, 366
BspCNI	CTCAG	1 cut(s)	610
BspDI	ATCGAT	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	99
BspMAI	CTGCAG	1 cut(s)	119
BspPI	GGATC	2 cut(s)	37, 636
BsrBI	CCGCTC	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	3 cut(s)	42, 485, 628
BssNI	GRCGYC	1 cut(s)	49
BssSI	CACGAG	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	150
Bst2BI	CACGAG	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	549
BstACI	GRCGYC	1 cut(s)	49
BstC8I	GCNNGC	3 cut(s)	97, 101, 364
BstDEI	CTNAG	1 cut(s)	618
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	3 cut(s)	45, 488, 631
BstMBI	GATC	3 cut(s)	42, 485, 628
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 109, 595, 623
BstSFI	CTRYAG	2 cut(s)	115, 172
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	129, 286
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	4 cut(s)	81, 132, 354, 366
BsuTUI	ATCGAT	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	681
BtsCI	GGATG	1 cut(s)	433
BtsIMutI	CAGTG	1 cut(s)	377
BtuMI	TCGCGA	1 cut(s)	99
Cac8I	GCNNGC	3 cut(s)	97, 101, 364
CfoI	GCGC	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	2 cut(s)	130, 365
ClaI	ATCGAT	1 cut(s)	33
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	321
CspAI	ACCGGT	1 cut(s)	372
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	1 cut(s)	568
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	3 cut(s)	44, 487, 630
DpnII	GATC	3 cut(s)	42, 485, 628
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
EciI	GGCGGA	1 cut(s)	136
Ecl136II	GAGCTC	3 cut(s)	103, 202, 439
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	3 cut(s)	105, 204, 441
Eco53kI	GAGCTC	3 cut(s)	103, 202, 439
Eco57I	CTGAAG	3 cut(s)	44, 324, 611
EcoICRI	GAGCTC	3 cut(s)	103, 202, 439
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	3 cut(s)	105, 204, 441
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	571
FaiI	YATR	2 cut(s)	282, 569
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	1 cut(s)	567
Fnu4HI	GCNGC	4 cut(s)	79, 118, 178, 300
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	3 cut(s)	105, 204, 441
Fsp4HI	GCNGC	4 cut(s)	79, 118, 178, 300
FspI	TGCGCA	1 cut(s)	361
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	4 cut(s)	79, 118, 178, 300
HaeIII	GGCC	4 cut(s)	81, 132, 354, 366
HapII	CCGG	2 cut(s)	46, 373
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	571
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	4 cut(s)	30, 186, 334, 388
HpaII	CCGG	2 cut(s)	46, 373
HphI	GGTGA	1 cut(s)	433
Hpy188I	TCNGA	2 cut(s)	343, 710
Hpy188III	TCNNGA	5 cut(s)	88, 98, 263, 425, 489
HpyAV	CCTTC	7 cut(s)	7, 66, 85, 150, 348, 529, 586
HpyCH4V	TGCA	4 cut(s)	19, 117, 550, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 109, 595, 623
HpyF3I	CTNAG	1 cut(s)	618
Hsp92I	GRCGYC	1 cut(s)	49
Hsp92II	CATG	1 cut(s)	571
HspAI	GCGC	1 cut(s)	360
Kzo9I	GATC	3 cut(s)	42, 485, 628
LmnI	GCTCC	6 cut(s)	75, 199, 307, 595, 682, 702
LpnPI	CCDG	7 cut(s)	59, 287, 309, 348, 386, 410, 697
Lsp1109I	GCAGC	2 cut(s)	129, 286
LweI	GCATC	1 cut(s)	684
MaeIII	GTNAC	4 cut(s)	55, 269, 375, 430
MalI	GATC	3 cut(s)	44, 487, 630
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	3 cut(s)	42, 485, 628
MboII	GAAGA	5 cut(s)	133, 302, 343, 566, 613
MfeI	CAATTG	1 cut(s)	458
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	4 cut(s)	105, 114, 204, 441
MluCI	AATT	2 cut(s)	247, 458
MmeI	TCCRAC	2 cut(s)	214, 381
MnlI	CCTC	8 cut(s)	92, 118, 214, 221, 242, 365, 613, 690
MseI	TTAA	1 cut(s)	473
MslI	CAYNNNNRTG	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	502
MspI	CCGG	2 cut(s)	46, 373
MunI	CAATTG	1 cut(s)	458
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	25, 109, 595, 623
NdeII	GATC	3 cut(s)	42, 485, 628
NlaIII	CATG	1 cut(s)	571
NmuCI	GTSAC	3 cut(s)	55, 375, 430
NruI	TCGCGA	1 cut(s)	99
NsbI	TGCGCA	1 cut(s)	361
PfeI	GAWTC	4 cut(s)	30, 186, 334, 388
PflMI	CCANNNNNTGG	1 cut(s)	196
PinAI	ACCGGT	1 cut(s)	372
PkrI	GCNGC	4 cut(s)	80, 119, 179, 301
Psp124BI	GAGCTC	3 cut(s)	105, 204, 441
PspPI	GGNCC	2 cut(s)	130, 365
PstI	CTGCAG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	502
RruI	TCGCGA	1 cut(s)	99
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
RseI	CAYNNNNRTG	1 cut(s)	285
SacI	GAGCTC	3 cut(s)	105, 204, 441
SaqAI	TTAA	1 cut(s)	473
SatI	GCNGC	4 cut(s)	79, 118, 178, 300
Sau3AI	GATC	3 cut(s)	42, 485, 628
Sau96I	GGNCC	2 cut(s)	130, 365
SduI	GDGCHC	4 cut(s)	105, 114, 204, 441
SfaNI	GCATC	1 cut(s)	684
SfcI	CTRYAG	2 cut(s)	115, 172
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	2 cut(s)	263, 449
SmoI	CTYRAG	2 cut(s)	263, 449
Sse9I	AATT	2 cut(s)	247, 458
SsiI	CCGC	4 cut(s)	78, 147, 177, 626
SstI	GAGCTC	3 cut(s)	105, 204, 441
StyI	CCWWGG	1 cut(s)	150
TaqI	TCGA	1 cut(s)	33
TasI	AATT	2 cut(s)	247, 458
TauI	GCSGC	2 cut(s)	81, 180
TfiI	GAWTC	4 cut(s)	30, 186, 334, 388
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	3 cut(s)	55, 375, 430
TseI	GCWGC	2 cut(s)	117, 299
Tsp45I	GTSAC	3 cut(s)	55, 375, 430
TspDTI	ATGAA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	196
XagI	CCTNNNNNAGG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.