Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Forward (+)

25992193 .. 25996202

Gene Structure 4010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGAAGAAGAAAAGTAGAGATCAAACGAATTGAGAACAAAAGCTCTCGACAAGTTACTTTCTGTAAACGACGAAATGGTCTCATGGAGAAAGCTCGTCAACTCTCAATTCTTTGTGAATCCTCCGTCGCTCTTATCATCATCTCTGCCACCGGAAGACTCTACAGCTTCTCCTCAGGTGATAGCATGGCCAAGATCCTCAGTCGTTATGAATTAGAACAGGCTGATGATCTTAAAACCTTGGATCTAGAAGAAAAAACTCTTAATTATCTTTCGCACAAGGAGTTGCTAGAAACAATCCAATGCAAGATTGAAGAAGCGAAAAGCGATAATGTAAGTATAGATTGTCTAAAGTCCCTGGAAGAGCAGCTCAAGACTGCTCTGTCTGTAACTAGAGCTAGGAAGACAGAACTAATGATGGAGCTTGTGAAGACCCATCAAGAGAAGGAGAAGCTGCTGAGAGAGGAGAACCAGAGTTTGACTAACCAGCTTATAAAGATGGGGAAGATGAAGAAGTCTGTGGAAGCAGAGGATGCAAGAGCAATGTCACCGGAAAGTAGCTCTGACAACAAGCCACCGGAGACTCTCCTGCTTCTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009909 GO:0009910 GO:0010048 GO:0010219 GO:0010221 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

200

Amino Acids

22.85

Weight (kDa)

8.79

Isoelectric Point (pI)

58.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	8.2e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	110 - 164	3.5e-09	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
AasI	GACNNNNNNGTC	2 cut(s)	78, 382
AclWI	GGATC	2 cut(s)	190, 252
AcoI	YGGCCR	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	357
AluBI	AGCT	9 cut(s)	45, 95, 168, 370, 398, 424, 454, 490, 561
AluI	AGCT	9 cut(s)	45, 95, 168, 370, 398, 424, 454, 490, 561
Alw26I	GTCTC	2 cut(s)	86, 575
AlwI	GGATC	2 cut(s)	190, 252
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	2 cut(s)	367, 454
AsuHPI	GGTGA	2 cut(s)	191, 540
AxyI	CCTNAGG	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	191
BbsI	GAAGAC	3 cut(s)	163, 410, 437
BbvI	GCAGC	2 cut(s)	379, 441
BccI	CCATC	3 cut(s)	412, 444, 493
BciT130I	CCWGG	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	86, 575
BfaI	CTAG	4 cut(s)	248, 290, 393, 399
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	2 cut(s)	368, 455
BlsI	GCNGC	2 cut(s)	369, 456
Bme1390I	CCNGG	1 cut(s)	359
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	523
BpiI	GAAGAC	3 cut(s)	163, 410, 437
BpuEI	CTTGAG	2 cut(s)	356, 581
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	240, 357
BsaWI	WCCGGW	3 cut(s)	152, 550, 577
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bse21I	CCTNAGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	359
BseDI	CCNNGG	2 cut(s)	240, 357
BseGI	GGATG	1 cut(s)	538
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	3 cut(s)	189, 214, 449
BseRI	GAGGAG	2 cut(s)	163, 479
BseXI	GCAGC	2 cut(s)	379, 441
BshFI	GGCC	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	153, 551, 578
BslFI	GGGAC	1 cut(s)	340
BsmAI	GTCTC	2 cut(s)	86, 575
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	191
Bso31I	GGTCTC	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	21, 195, 229, 244
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	3 cut(s)	188, 213, 450
BspPI	GGATC	2 cut(s)	190, 252
BspQI	GCTCTTC	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	549
BssECI	CCNNGG	2 cut(s)	240, 357
BssMI	GATC	4 cut(s)	21, 195, 229, 244
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	359
Bst6I	CTCTTC	1 cut(s)	357
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstDEI	CTNAG	3 cut(s)	175, 200, 458
BstF5I	GGATG	1 cut(s)	538
BstKTI	GATC	4 cut(s)	24, 198, 232, 247
BstMAI	GTCTC	2 cut(s)	86, 575
BstMBI	GATC	4 cut(s)	21, 195, 229, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	533
BstNI	CCWGG	1 cut(s)	359
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	379, 441
BstV2I	GAAGAC	3 cut(s)	163, 410, 437
BstX2I	RGATCY	2 cut(s)	195, 244
BstYI	RGATCY	2 cut(s)	195, 244
Bsu36I	CCTNAGG	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	538
CviAII	CATG	2 cut(s)	85, 187
DdeI	CTNAG	3 cut(s)	175, 200, 458
DpnI	GATC	4 cut(s)	23, 197, 231, 246
DpnII	GATC	4 cut(s)	21, 195, 229, 244
DrdI	GACNNNNNNGTC	2 cut(s)	78, 382
DseDI	GACNNNNNNGTC	2 cut(s)	78, 382
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	86
Eco81I	CCTNAGG	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	357
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	2 cut(s)	88, 190
FaiI	YATR	5 cut(s)	86, 188, 210, 341, 494
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	2 cut(s)	84, 186
Fnu4HI	GCNGC	2 cut(s)	368, 455
FokI	GGATG	1 cut(s)	545
Fsp4HI	GCNGC	2 cut(s)	368, 455
FspBI	CTAG	4 cut(s)	248, 290, 393, 399
GluI	GCNGC	2 cut(s)	368, 455
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	3 cut(s)	153, 551, 578
Hin1II	CATG	2 cut(s)	88, 190
HincII	GTYRAC	1 cut(s)	101
HindII	GTYRAC	1 cut(s)	101
HinfI	GANTC	3 cut(s)	119, 159, 583
HpaII	CCGG	3 cut(s)	153, 551, 578
HphI	GGTGA	2 cut(s)	191, 540
Hpy166II	GTNNAC	2 cut(s)	68, 101
Hpy188I	TCNGA	1 cut(s)	565
Hpy188III	TCNNGA	4 cut(s)	48, 248, 373, 440
Hpy8I	GTNNAC	2 cut(s)	68, 101
Hpy99I	CGWCG	2 cut(s)	75, 131
HpyAV	CCTTC	1 cut(s)	439
HpyCH4V	TGCA	2 cut(s)	306, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	533
HpyF3I	CTNAG	3 cut(s)	175, 200, 458
Hsp92II	CATG	2 cut(s)	88, 190
Kzo9I	GATC	4 cut(s)	21, 195, 229, 244
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	421
LpnPI	CCDG	9 cut(s)	162, 166, 206, 344, 371, 485, 500, 564, 591
Lsp1109I	GCAGC	2 cut(s)	379, 441
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	4 cut(s)	248, 290, 393, 399
MaeIII	GTNAC	3 cut(s)	55, 388, 546
MalI	GATC	4 cut(s)	23, 197, 231, 246
MboI	GATC	4 cut(s)	21, 195, 229, 244
MflI	RGATCY	2 cut(s)	195, 244
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	4 cut(s)	30, 108, 212, 265
MluNI	TGGCCA	1 cut(s)	191
MlyI	GAGTC	2 cut(s)	153, 577
MnlI	CCTC	5 cut(s)	133, 184, 209, 457, 523
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	2 cut(s)	234, 264
Msp20I	TGGCCA	1 cut(s)	191
MspI	CCGG	3 cut(s)	153, 551, 578
MspR9I	CCNGG	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	533
NdeII	GATC	4 cut(s)	21, 195, 229, 244
NlaIII	CATG	2 cut(s)	88, 190
NmuCI	GTSAC	1 cut(s)	546
PciSI	GCTCTTC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	369, 456
PleI	GAGTC	2 cut(s)	153, 577
PpsI	GAGTC	2 cut(s)	153, 577
PsiI	TTATAA	1 cut(s)	494
Psp6I	CCWGG	1 cut(s)	357
PspGI	CCWGG	1 cut(s)	357
PsuI	RGATCY	2 cut(s)	195, 244
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	234, 264
SatI	GCNGC	2 cut(s)	368, 455
Sau3AI	GATC	4 cut(s)	21, 195, 229, 244
SchI	GAGTC	2 cut(s)	153, 577
ScrFI	CCNGG	1 cut(s)	359
SfaNI	GCATC	1 cut(s)	523
SfcI	CTRYAG	1 cut(s)	163
SmlI	CTYRAG	2 cut(s)	371, 596
SmoI	CTYRAG	2 cut(s)	371, 596
Sse9I	AATT	4 cut(s)	30, 108, 212, 265
SspMI	CTAG	4 cut(s)	248, 290, 393, 399
StyD4I	CCNGG	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	240
TaqI	TCGA	1 cut(s)	49
TasI	AATT	4 cut(s)	30, 108, 212, 265
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	234, 264
Tru9I	TTAA	2 cut(s)	234, 264
TseFI	GTSAC	1 cut(s)	546
TseI	GCWGC	2 cut(s)	367, 454
Tsp45I	GTSAC	1 cut(s)	546
TspDTI	ATGAA	2 cut(s)	225, 524
TspGWI	ACGGA	1 cut(s)	115
XbaI	TCTAGA	1 cut(s)	247
XspI	CTAG	4 cut(s)	248, 290, 393, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.