Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Reverse (-)

88868122 .. 88880970

Gene Structure 12849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG678500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGGTAGAGGGAAGGTGCAACTGAAGCGAATCGAGGACAAGATCAGGCGCCAAGTGACTTTCTCCAAGAGAAGGACTGGGCTGATAAAGAAGGCTCGCGAGCTCTCCGTGCTGTGCGGCGTCGAGGTTGGGCTCATCATCTTCTCCGCCAAAGGGAGGCTCTACGAGTTCTGTAGCGGCGATAGTTTAGGAAATGTTCTTGAGCGTTACCAGATACATAATGAGGAAGAAGTTGCTGCTCCCAAGAATGCCAAGAAACATAATTTGGAATTGACTGGTAATGGCACATGCGCTAAGAAATCCCTGAAAATGATTCAAAGTGAACTAGAAGCACAGAACATTGAAAATCTGGATGTGACAGAGCTCACTCAACTTGAGAAGCAACTGGATGCTATATTAAGACAAACAAGATCAAGAAAGACGCAGCTCATGATGGAAACAATAACAGCTCTCATTGAGAAGGGAAAGAAGCTGGGAGAAGAGAAGGATCTCATGGAAAAGGAGATTGCAGCACTGATGGTGGAGAAGGCGAACCAGCCGGAACAGCCAACTGCGATTGCTGCTGCTAATGATAATCATGATGATGAGGAAATGGAAGGAGAACGAGAAGGAGAAGCAGATGAGCACAGCAGTTGTGCCCACACCAAACATCCCGTGCTTAATTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

223

Amino Acids

25.11

Weight (kDa)

6.14

Isoelectric Point (pI)

44.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	102 - 169	2.2e-10	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	48
AccII	CGCG	1 cut(s)	99
AciI	CCGC	3 cut(s)	117, 147, 177
AclWI	GGATC	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	44
AcyI	GRCGYC	2 cut(s)	49, 120
AfiI	CCNNNNNNNGG	3 cut(s)	72, 153, 156
AgsI	TTSAA	2 cut(s)	317, 344
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	5 cut(s)	103, 364, 427, 449, 472
AluI	AGCT	5 cut(s)	103, 364, 427, 449, 472
Alw21I	GWGCWC	3 cut(s)	105, 366, 627
AlwI	GGATC	1 cut(s)	495
ApeKI	GCWGC	5 cut(s)	236, 424, 509, 560, 563
AspLEI	GCGC	2 cut(s)	51, 293
BaeGI	GKGCMC	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	48
BanII	GRGCYC	3 cut(s)	105, 135, 366
Bbv12I	GWGCWC	3 cut(s)	105, 366, 627
BbvI	GCAGC	5 cut(s)	223, 436, 521, 547, 550
BccI	CCATC	2 cut(s)	427, 511
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	52
BisI	GCNGC	7 cut(s)	118, 178, 237, 425, 510, 561, 564
BlsI	GCNGC	7 cut(s)	119, 179, 238, 426, 511, 562, 565
BmiI	GGNNCC	1 cut(s)	50
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	87
BpuEI	CTTGAG	2 cut(s)	221, 395
BsaHI	GRCGYC	2 cut(s)	49, 120
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 153, 156
Bse1I	ACTGG	3 cut(s)	82, 280, 390
BseGI	GGATG	3 cut(s)	358, 394, 649
BseLI	CCNNNNNNNGG	3 cut(s)	72, 153, 156
BseNI	ACTGG	3 cut(s)	82, 280, 390
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	5 cut(s)	223, 436, 521, 547, 550
BseYI	CCCAGC	1 cut(s)	472
Bsh1236I	CGCG	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	48
BsiHKAI	GWGCWC	3 cut(s)	105, 366, 627
BsiSI	CCGG	1 cut(s)	539
BslI	CCNNNNNNNGG	3 cut(s)	72, 153, 156
BsmI	GAATGC	1 cut(s)	253
Bsp1286I	GDGCHC	5 cut(s)	105, 135, 366, 627, 640
Bsp143I	GATC	3 cut(s)	42, 410, 487
Bsp68I	TCGCGA	1 cut(s)	99
BspACI	CCGC	3 cut(s)	117, 147, 177
BspFNI	CGCG	1 cut(s)	99
BspHI	TCATGA	2 cut(s)	429, 577
BspLI	GGNNCC	1 cut(s)	50
BspPI	GGATC	1 cut(s)	495
BspT107I	GGYRCC	1 cut(s)	48
BsrI	ACTGG	3 cut(s)	82, 280, 390
BssMI	GATC	3 cut(s)	42, 410, 487
BssNI	GRCGYC	2 cut(s)	49, 120
Bst6I	CTCTTC	1 cut(s)	474
BstACI	GRCGYC	2 cut(s)	49, 120
BstC8I	GCNNGC	2 cut(s)	97, 101
BstDEI	CTNAG	1 cut(s)	294
BstF5I	GGATG	3 cut(s)	358, 394, 649
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	2 cut(s)	51, 293
BstKTI	GATC	3 cut(s)	45, 413, 490
BstMBI	GATC	3 cut(s)	42, 410, 487
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 109, 544, 560
BstNSI	RCATGY	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	640
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	5 cut(s)	223, 436, 521, 547, 550
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BtsCI	GGATG	3 cut(s)	358, 394, 649
BtsIMutI	CAGTG	1 cut(s)	512
BtuMI	TCGCGA	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	97, 101
CciI	TCATGA	2 cut(s)	429, 577
CfoI	GCGC	2 cut(s)	51, 293
CseI	GACGC	2 cut(s)	109, 430
CviAII	CATG	4 cut(s)	288, 430, 493, 578
DdeI	CTNAG	1 cut(s)	294
DinI	GGCGCC	1 cut(s)	50
DpnI	GATC	3 cut(s)	44, 412, 489
DpnII	GATC	3 cut(s)	42, 410, 487
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
EciI	GGCGGA	1 cut(s)	136
Ecl136II	GAGCTC	2 cut(s)	103, 364
Eco24I	GRGCYC	3 cut(s)	105, 135, 366
Eco53kI	GAGCTC	2 cut(s)	103, 364
Eco57I	CTGAAG	1 cut(s)	44
EcoICRI	GAGCTC	2 cut(s)	103, 364
EcoT38I	GRGCYC	3 cut(s)	105, 135, 366
EgeI	GGCGCC	1 cut(s)	50
EheI	GGCGCC	1 cut(s)	50
FaeI	CATG	4 cut(s)	291, 433, 496, 581
FaiI	YATR	7 cut(s)	219, 261, 289, 395, 431, 494, 579
FatI	CATG	4 cut(s)	287, 429, 492, 577
Fnu4HI	GCNGC	7 cut(s)	118, 178, 237, 425, 510, 561, 564
FokI	GGATG	3 cut(s)	365, 401, 636
FriOI	GRGCYC	3 cut(s)	105, 135, 366
Fsp4HI	GCNGC	7 cut(s)	118, 178, 237, 425, 510, 561, 564
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	2 cut(s)	50, 292
GluI	GCNGC	7 cut(s)	118, 178, 237, 425, 510, 561, 564
GsaI	CCCAGC	1 cut(s)	476
HaeII	RGCGCY	1 cut(s)	52
HapII	CCGG	1 cut(s)	539
HgaI	GACGC	2 cut(s)	109, 430
HhaI	GCGC	2 cut(s)	51, 293
Hin1I	GRCGYC	2 cut(s)	49, 120
Hin1II	CATG	4 cut(s)	291, 433, 496, 581
Hin6I	GCGC	2 cut(s)	49, 291
HinP1I	GCGC	2 cut(s)	49, 291
HinfI	GANTC	2 cut(s)	30, 313
HpaII	CCGG	1 cut(s)	539
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188III	TCNNGA	6 cut(s)	98, 200, 350, 414, 430, 578
Hpy8I	GTNNAC	1 cut(s)	323
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	8 cut(s)	7, 66, 85, 454, 478, 520, 590, 602
HpyCH4V	TGCA	2 cut(s)	19, 509
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 109, 544, 560
HpyF3I	CTNAG	1 cut(s)	294
Hsp92I	GRCGYC	2 cut(s)	49, 120
Hsp92II	CATG	4 cut(s)	291, 433, 496, 581
HspAI	GCGC	2 cut(s)	49, 291
KasI	GGCGCC	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	42, 410, 487
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	5 cut(s)	223, 436, 521, 547, 550
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	326
MaeIII	GTNAC	3 cut(s)	55, 206, 355
MalI	GATC	3 cut(s)	44, 412, 489
MboI	GATC	3 cut(s)	42, 410, 487
MboII	GAAGA	3 cut(s)	133, 239, 491
MflI	RGATCY	1 cut(s)	487
MhlI	GDGCHC	5 cut(s)	105, 135, 366, 627, 640
MluCI	AATT	3 cut(s)	262, 269, 661
Mly113I	GGCGCC	1 cut(s)	49
MnlI	CCTC	5 cut(s)	28, 118, 150, 217, 580
MseI	TTAA	2 cut(s)	398, 660
MslI	CAYNNNNRTG	1 cut(s)	582
MspI	CCGG	1 cut(s)	539
Mva1269I	GAATGC	1 cut(s)	253
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	4 cut(s)	25, 109, 544, 560
NarI	GGCGCC	1 cut(s)	49
NdeII	GATC	3 cut(s)	42, 410, 487
NlaIII	CATG	4 cut(s)	291, 433, 496, 581
NlaIV	GGNNCC	1 cut(s)	50
NmuCI	GTSAC	2 cut(s)	55, 355
NruI	TCGCGA	1 cut(s)	99
NspI	RCATGY	1 cut(s)	291
PagI	TCATGA	2 cut(s)	429, 577
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	30, 313
PkrI	GCNGC	7 cut(s)	119, 179, 238, 426, 511, 562, 565
PluTI	GGCGCC	1 cut(s)	52
Psp124BI	GAGCTC	2 cut(s)	105, 366
PspFI	CCCAGC	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	487
RruI	TCGCGA	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	582
SacI	GAGCTC	2 cut(s)	105, 366
SaqAI	TTAA	2 cut(s)	398, 660
SatI	GCNGC	7 cut(s)	118, 178, 237, 425, 510, 561, 564
Sau3AI	GATC	3 cut(s)	42, 410, 487
SduI	GDGCHC	5 cut(s)	105, 135, 366, 627, 640
SetI	ASST	7 cut(s)	18, 105, 129, 366, 429, 451, 474
SfaNI	GCATC	1 cut(s)	379
SfcI	CTRYAG	1 cut(s)	172
SfoI	GGCGCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	2 cut(s)	200, 374
SmoI	CTYRAG	2 cut(s)	200, 374
Sse9I	AATT	3 cut(s)	262, 269, 661
SsiI	CCGC	3 cut(s)	117, 147, 177
SspDI	GGCGCC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	326
SstI	GAGCTC	2 cut(s)	105, 366
TaqI	TCGA	2 cut(s)	33, 123
TasI	AATT	3 cut(s)	262, 269, 661
TauI	GCSGC	2 cut(s)	120, 180
TfiI	GAWTC	2 cut(s)	30, 313
Tru1I	TTAA	2 cut(s)	398, 660
Tru9I	TTAA	2 cut(s)	398, 660
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	2 cut(s)	55, 355
TseI	GCWGC	5 cut(s)	236, 424, 509, 560, 563
Tsp45I	GTSAC	2 cut(s)	55, 355
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	519
XceI	RCATGY	1 cut(s)	291
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.