Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Reverse (-)

3173382 .. 3179448

Gene Structure 6067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10140.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGAAGAAAAAAACTAGAAATCAAGCGAATTGAGAACAAAAGTAGCCGACAAGTCACCTTCTCCAAACGTCGCAACGGTCTCATCGAGAAAGCTCGTCAGCTTTCTGTTCTCTGTGACGCATCCGTCGCTCTTCTCGTCGTCTCCGCCTCCGGCAAGCTCTACAGCTTCTCCTCCGGCGATAACCTGGTCAAGATCCTTGATCGATATGGGAAACAGCATGCTGATGATCTTAAAGCCTTGGATCATCAGTCAAAAGCTCTGAACTATGGTTCACACTATGAGCTACTTGAACTTGTGGATAGCAAGCTTGTGGGATCAAATGTCAAAAATGTGAGTATCGATGCTCTTGTTCAACTGGAGGAACACCTTGAGACTGCCCTCTCCGTGACTAGAGCCAAGAAGACCGAACTCATGTTGAAGCTTGTTGAGAATCTTAAAGAAAAGGAGAAAATGCTGAAAGAAGAGAACCAGGTTTTGGCTAGCCAGATGGAGAATAATCATCATGTGGGAGCAGAAGCTGAGATGGAGATGTCACCTGCTGGACAAATCTCCGACAATCTTCCGGTGACTCTCCCACTACTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009909 GO:0009910 GO:0010048 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042752 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

196

Amino Acids

21.86

Weight (kDa)

7.83

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	6.1e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	89 - 164	1.3e-12	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	547
AasI	GACNNNNNNGTC	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	547
AccB7I	CCANNNNNTGG	1 cut(s)	478
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	3 cut(s)	190, 252, 325
AfiI	CCNNNNNNNGG	1 cut(s)	478
AgsI	TTSAA	3 cut(s)	293, 356, 421
AjnI	CCWGG	2 cut(s)	186, 471
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AluBI	AGCT	9 cut(s)	95, 103, 160, 168, 260, 286, 310, 424, 521
AluI	AGCT	9 cut(s)	95, 103, 160, 168, 260, 286, 310, 424, 521
Alw26I	GTCTC	3 cut(s)	86, 148, 368
AlwI	GGATC	3 cut(s)	190, 252, 325
AlwNI	CAGNNNCTG	1 cut(s)	521
AsuHPI	GGTGA	3 cut(s)	49, 528, 580
AsuNHI	GCTAGC	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	410
BccI	CCATC	2 cut(s)	484, 520
BciT130I	CCWGG	2 cut(s)	188, 473
BcoDI	GTCTC	3 cut(s)	86, 148, 368
BfaI	CTAG	3 cut(s)	17, 393, 483
BfmI	CTRYAG	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	547
Bme1390I	CCNGG	2 cut(s)	188, 473
BmrFI	CCNGG	2 cut(s)	188, 473
BmsI	GCATC	2 cut(s)	131, 334
BmtI	GCTAGC	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	392
Bsa29I	ATCGAT	2 cut(s)	205, 342
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	565
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
Bse1I	ACTGG	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	188, 473
BseCI	ATCGAT	2 cut(s)	205, 342
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	1 cut(s)	363
BseRI	GAGGAG	1 cut(s)	163
BshVI	ATCGAT	2 cut(s)	205, 342
BsiSI	CCGG	3 cut(s)	153, 177, 566
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	3 cut(s)	86, 148, 368
BsmBI	CGTCTC	1 cut(s)	148
Bso31I	GGTCTC	1 cut(s)	86
Bsp143I	GATC	5 cut(s)	195, 202, 229, 244, 317
BspACI	CCGC	1 cut(s)	147
BspCNI	CTCAG	1 cut(s)	514
BspDI	ATCGAT	2 cut(s)	205, 342
BspMI	ACCTGC	1 cut(s)	547
BspOI	GCTAGC	1 cut(s)	486
BspPI	GGATC	3 cut(s)	190, 252, 325
BspQI	GCTCTTC	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	363
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	5 cut(s)	195, 202, 229, 244, 317
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	188, 473
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	2 cut(s)	138, 459
BstC8I	GCNNGC	4 cut(s)	158, 222, 308, 484
BstDEI	CTNAG	1 cut(s)	522
BstF5I	GGATG	1 cut(s)	122
BstKTI	GATC	5 cut(s)	198, 205, 232, 247, 320
BstMAI	GTCTC	3 cut(s)	86, 148, 368
BstMBI	GATC	5 cut(s)	195, 202, 229, 244, 317
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	2 cut(s)	188, 473
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	186, 471
BstSFI	CTRYAG	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
Bsu15I	ATCGAT	2 cut(s)	205, 342
BsuTUI	ATCGAT	2 cut(s)	205, 342
BtsCI	GGATG	1 cut(s)	122
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	4 cut(s)	158, 222, 308, 484
CaiI	CAGNNNCTG	1 cut(s)	521
ClaI	ATCGAT	2 cut(s)	205, 342
CseI	GACGC	1 cut(s)	128
CsiI	ACCWGGT	2 cut(s)	186, 471
CviAII	CATG	3 cut(s)	221, 415, 506
DdeI	CTNAG	1 cut(s)	522
DpnI	GATC	5 cut(s)	197, 204, 231, 246, 319
DpnII	GATC	5 cut(s)	195, 202, 229, 244, 317
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	2 cut(s)	138, 459
EarI	CTCTTC	2 cut(s)	138, 459
EciI	GGCGGA	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	186, 471
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	3 cut(s)	224, 418, 509
FaiI	YATR	6 cut(s)	210, 222, 270, 282, 416, 507
FatI	CATG	3 cut(s)	220, 414, 505
FokI	GGATG	1 cut(s)	109
FspBI	CTAG	3 cut(s)	17, 393, 483
GsuI	CTGGAG	1 cut(s)	380
HapII	CCGG	3 cut(s)	153, 177, 566
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	3 cut(s)	224, 418, 509
HindIII	AAGCTT	2 cut(s)	308, 422
HinfI	GANTC	2 cut(s)	433, 571
HpaII	CCGG	3 cut(s)	153, 177, 566
HphI	GGTGA	3 cut(s)	49, 528, 580
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	264, 556
Hpy188III	TCNNGA	2 cut(s)	88, 193
Hpy8I	GTNNAC	1 cut(s)	275
Hpy99I	CGWCG	3 cut(s)	75, 131, 143
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	522
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	3 cut(s)	224, 418, 509
Kzo9I	GATC	5 cut(s)	195, 202, 229, 244, 317
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	512
LweI	GCATC	2 cut(s)	131, 334
MabI	ACCWGGT	2 cut(s)	186, 471
MaeI	CTAG	3 cut(s)	17, 393, 483
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	5 cut(s)	55, 116, 388, 534, 568
MalI	GATC	5 cut(s)	197, 204, 231, 246, 319
MboI	GATC	5 cut(s)	195, 202, 229, 244, 317
MboII	GAAGA	5 cut(s)	18, 125, 415, 476, 554
MflI	RGATCY	1 cut(s)	195
MluCI	AATT	2 cut(s)	30, 586
MlyI	GAGTC	1 cut(s)	565
MmeI	TCCRAC	1 cut(s)	579
MnlI	CCTC	4 cut(s)	160, 184, 355, 392
MseI	TTAA	3 cut(s)	234, 438, 585
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	3 cut(s)	153, 177, 566
MspR9I	CCNGG	2 cut(s)	188, 473
MvaI	CCWGG	2 cut(s)	188, 473
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	5 cut(s)	195, 202, 229, 244, 317
NheI	GCTAGC	1 cut(s)	482
NlaIII	CATG	3 cut(s)	224, 418, 509
NmuCI	GTSAC	5 cut(s)	55, 116, 388, 534, 568
NspI	RCATGY	1 cut(s)	224
PaeI	GCATGC	1 cut(s)	224
PaqCI	CACCTGC	1 cut(s)	547
PciSI	GCTCTTC	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 135
PfeI	GAWTC	1 cut(s)	433
PflMI	CCANNNNNTGG	1 cut(s)	478
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Psp6I	CCWGG	2 cut(s)	186, 471
PspGI	CCWGG	2 cut(s)	186, 471
PstNI	CAGNNNCTG	1 cut(s)	521
PsuI	RGATCY	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	3 cut(s)	234, 438, 585
Sau3AI	GATC	5 cut(s)	195, 202, 229, 244, 317
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	2 cut(s)	188, 473
SexAI	ACCWGGT	2 cut(s)	186, 471
SfaNI	GCATC	2 cut(s)	131, 334
SfcI	CTRYAG	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SphI	GCATGC	1 cut(s)	224
Sse9I	AATT	2 cut(s)	30, 586
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	3 cut(s)	17, 393, 483
StyD4I	CCNGG	2 cut(s)	186, 471
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	3 cut(s)	87, 205, 342
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	2 cut(s)	30, 586
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	3 cut(s)	234, 438, 585
Tru9I	TTAA	3 cut(s)	234, 438, 585
TseFI	GTSAC	5 cut(s)	55, 116, 388, 534, 568
Tsp45I	GTSAC	5 cut(s)	55, 116, 388, 534, 568
TspGWI	ACGGA	2 cut(s)	115, 376
Van91I	CCANNNNNTGG	1 cut(s)	478
XceI	RCATGY	1 cut(s)	224
XspI	CTAG	3 cut(s)	17, 393, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.