Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Forward (+)

651155 .. 663313

Gene Structure 12159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1009100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGGGCGAGGGAAGGTGCAGCTGAAGCCAATCGCCGACAAGATCAGGCGGCAAGTGACGTTTTCCAAGCGGAGGAGCGGGCTTATCAAGAAGGCACGTGAGCTGTCCGTGCTCTGCAGCGTGGAGGTCGGCCTCGTCATCTTCTCCGCCAAGGGGAGGCTCTACGAGTTCTGTAGCGCCGAGAGTTTTGAAAAGCTTCTGGAGCGTTACCAGGTACATAATGATGAGGAGATTGCTGCTGCCAAGACTGCTGATGGTACTGACAAGAACCATAATTCAGAAAGCAGTGGTCTCCGCACAGGCGCTAACCGATCTCTGAAAATATTTAAACGCGATATGGAAACACAAGACATTGATAATCTAGATGTTCCAGAGCTCACCCAGCTTGAGAAGGAATTGGATGCAGTTCTACGACAAACAAGATCAATAAAGGAAAAACAGATGAAAGAAGAGAAGGTTCGCTTGGAAAATGAGATTGCAGCACTGAAGCTGAAGGAGCAGCAGAGCAAGGACCGAGCTGCCGATGAGGAAGCGGATCGGCAGAGCACTTCCGCCGCTAATAACACCACCACCACCACCAACAACAGCCGCAGCAGCGAAGACTATGTTCCGGCCACCATACTACAGTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

212

Amino Acids

23.87

Weight (kDa)

8.44

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.9e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	89 - 163	2.6e-06	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	78
AccII	CGCG	1 cut(s)	333
AciI	CCGC	9 cut(s)	49, 70, 78, 147, 295, 533, 552, 555, 589
AclWI	GGATC	1 cut(s)	543
AcoI	YGGCCR	1 cut(s)	612
AcuI	CTGAAG	3 cut(s)	44, 506, 512
AcvI	CACGTG	1 cut(s)	98
AfaI	GTAC	2 cut(s)	216, 259
AfiI	CCNNNNNNNGG	3 cut(s)	72, 153, 156
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	210
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AluBI	AGCT	7 cut(s)	22, 103, 196, 376, 385, 490, 518
AluI	AGCT	7 cut(s)	22, 103, 196, 376, 385, 490, 518
Alw21I	GWGCWC	3 cut(s)	114, 378, 548
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	1 cut(s)	543
AoxI	GGCC	2 cut(s)	130, 612
ApeKI	GCWGC	9 cut(s)	19, 117, 236, 239, 479, 499, 518, 591, 594
Asp700I	GAANNNNTTC	1 cut(s)	195
AspLEI	GCGC	2 cut(s)	179, 305
AspS9I	GGNCC	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	378
BbrPI	CACGTG	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	606
Bbv12I	GWGCWC	3 cut(s)	114, 378, 548
BbvI	GCAGC	9 cut(s)	31, 129, 223, 226, 491, 505, 511, 603, 606
BccI	CCATC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	3 cut(s)	115, 172, 623
BfoI	RGCGCY	2 cut(s)	180, 306
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	511
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	391
BpiI	GAAGAC	1 cut(s)	606
BpmI	CTGGAG	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	407
BsaAI	YACGTR	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 153, 156
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	3 cut(s)	72, 153, 156
BseRI	GAGGAG	2 cut(s)	88, 242
BseXI	GCAGC	9 cut(s)	31, 129, 223, 226, 491, 505, 511, 603, 606
BseYI	CCCAGC	1 cut(s)	381
BsgI	GTGCAG	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	2 cut(s)	132, 614
BsiHKAI	GWGCWC	3 cut(s)	114, 378, 548
BsiSI	CCGG	1 cut(s)	611
BslI	CCNNNNNNNGG	3 cut(s)	72, 153, 156
BsmAI	GTCTC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	132, 614
Bso31I	GGTCTC	1 cut(s)	296
Bsp1286I	GDGCHC	3 cut(s)	114, 378, 548
Bsp143I	GATC	4 cut(s)	42, 311, 422, 535
BspACI	CCGC	9 cut(s)	49, 70, 78, 147, 295, 533, 552, 555, 589
BspANI	GGCC	2 cut(s)	132, 614
BspFNI	CGCG	1 cut(s)	333
BspMAI	CTGCAG	1 cut(s)	119
BspPI	GGATC	1 cut(s)	543
BspTNI	GGTCTC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	4 cut(s)	42, 311, 422, 535
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	627
Bst6I	CTCTTC	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	406
BstFNI	CGCG	1 cut(s)	333
BstH2I	RGCGCY	2 cut(s)	180, 306
BstHHI	GCGC	2 cut(s)	179, 305
BstKTI	GATC	4 cut(s)	45, 314, 425, 538
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	4 cut(s)	42, 311, 422, 535
BstMWI	GCNNNNNNNGC	7 cut(s)	25, 109, 202, 248, 382, 496, 594
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstSFI	CTRYAG	3 cut(s)	115, 172, 623
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	9 cut(s)	31, 129, 223, 226, 491, 505, 511, 603, 606
BstV2I	GAAGAC	1 cut(s)	606
BsuRI	GGCC	2 cut(s)	132, 614
BtsCI	GGATG	1 cut(s)	406
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	292, 482
Cac8I	GCNNGC	1 cut(s)	80
CfoI	GCGC	2 cut(s)	179, 305
Cfr13I	GGNCC	1 cut(s)	511
CsiI	ACCWGGT	1 cut(s)	210
Csp6I	GTAC	2 cut(s)	215, 258
CviQI	GTAC	2 cut(s)	215, 258
DpnI	GATC	4 cut(s)	44, 313, 424, 537
DpnII	GATC	4 cut(s)	42, 311, 422, 535
DraI	TTTAAA	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	612
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
EciI	GGCGGA	2 cut(s)	136, 541
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	511
Eco53kI	GAGCTC	1 cut(s)	376
Eco57I	CTGAAG	3 cut(s)	44, 506, 512
Eco72I	CACGTG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	150
FaiI	YATR	5 cut(s)	219, 273, 338, 606, 620
FalI	AAGNNNNNCTT	2 cut(s)	446, 478
FauI	CCCGC	1 cut(s)	71
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	378
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	2 cut(s)	178, 304
GsaI	CCCAGC	1 cut(s)	385
GsuI	CTGGAG	1 cut(s)	221
HaeII	RGCGCY	2 cut(s)	180, 306
HaeIII	GGCC	2 cut(s)	132, 614
HapII	CCGG	1 cut(s)	611
HhaI	GCGC	2 cut(s)	179, 305
Hin6I	GCGC	2 cut(s)	177, 303
HinP1I	GCGC	2 cut(s)	177, 303
HindIII	AAGCTT	1 cut(s)	194
HpaII	CCGG	1 cut(s)	611
HphI	GGTGA	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	280, 318
Hpy188III	TCNNGA	4 cut(s)	88, 200, 362, 371
HpyAV	CCTTC	5 cut(s)	7, 85, 385, 448, 487
HpyCH4III	ACNGT	1 cut(s)	627
HpyCH4IV	ACGT	2 cut(s)	59, 97
HpyCH4V	TGCA	4 cut(s)	19, 117, 404, 479
HpyF10VI	GCNNNNNNNGC	7 cut(s)	25, 109, 202, 248, 382, 496, 594
HpySE526I	ACGT	2 cut(s)	59, 97
HspAI	GCGC	2 cut(s)	177, 303
Kzo9I	GATC	4 cut(s)	42, 311, 422, 535
LmnI	GCTCC	3 cut(s)	75, 202, 496
LpnPI	CCDG	8 cut(s)	31, 185, 197, 224, 285, 384, 395, 624
Lsp1109I	GCAGC	9 cut(s)	31, 129, 223, 226, 491, 505, 511, 603, 606
LweI	GCATC	1 cut(s)	391
MabI	ACCWGGT	1 cut(s)	210
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	2 cut(s)	59, 97
MaeIII	GTNAC	2 cut(s)	55, 206
MalI	GATC	4 cut(s)	44, 313, 424, 537
MbiI	CCGCTC	1 cut(s)	78
MboI	GATC	4 cut(s)	42, 311, 422, 535
MboII	GAAGA	3 cut(s)	133, 461, 611
MhlI	GDGCHC	3 cut(s)	114, 378, 548
MluCI	AATT	2 cut(s)	274, 395
MnlI	CCTC	6 cut(s)	66, 118, 143, 150, 220, 520
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	2 cut(s)	327, 634
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	1 cut(s)	611
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	7 cut(s)	25, 109, 202, 248, 382, 496, 594
NdeII	GATC	4 cut(s)	42, 311, 422, 535
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	195
PmaCI	CACGTG	1 cut(s)	98
PmlI	CACGTG	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	210
PspCI	CACGTG	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	2 cut(s)	216, 259
RsaNI	GTAC	2 cut(s)	215, 258
RseI	CAYNNNNRTG	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	327, 634
Sau3AI	GATC	4 cut(s)	42, 311, 422, 535
Sau96I	GGNCC	1 cut(s)	511
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	3 cut(s)	114, 378, 548
SexAI	ACCWGGT	1 cut(s)	210
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	3 cut(s)	115, 172, 623
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	274, 395
SsiI	CCGC	9 cut(s)	49, 70, 78, 147, 295, 533, 552, 555, 589
SspI	AATATT	1 cut(s)	324
SspMI	CTAG	1 cut(s)	362
SstI	GAGCTC	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	627
TaiI	ACGT	2 cut(s)	62, 100
TaqII	GACCGA	1 cut(s)	528
TasI	AATT	2 cut(s)	274, 395
TauI	GCSGC	3 cut(s)	52, 557, 591
Tru1I	TTAA	2 cut(s)	327, 634
Tru9I	TTAA	2 cut(s)	327, 634
TscAI	CASTG	2 cut(s)	292, 489
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	9 cut(s)	19, 117, 236, 239, 479, 499, 518, 591, 594
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	458
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	2 cut(s)	292, 489
VpaK11BI	GGWCC	1 cut(s)	511
XbaI	TCTAGA	1 cut(s)	361
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.