Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Forward (+)

680243 .. 692269

Gene Structure 12027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00077000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAAGAAGGCTCGCGAGCTCTCCGTGCTGTGCGGCGTCGAGGTTGGGCTCATCATCTTCTCCGCCAAAGGGAGGCTCTACGAGTTCTGTAGCGGCGATAGTTTAGGAAATGTTCTTGAGCGTTACCAGATACATAATGAGGAAGAAGTTGCTGCTCCCAAGAATGCCAAGAAACATAATTTGGAATTGACTGGTAATGGCACATGCGCTAAGAAATCCCTGAAAATGATTCAAAGTGAACTAGAAGCACAGAACATTGAAAATCTGGATGTGACAGAGCTCACTCAACTTGAGAAGCAACTGGATGCCATATTAAGACAAACAAGATCAAGAAAGACGCAGCTCATGATGGAAACAATAACAGCTCTCATTGAGAAGGGAAAGAAGCTGGGAGAAGAGAAGGATCTAATGGAAAAGGAGATTGCAGCACTGATGGTGGAGAAGGCGAACCAGCCAGAACAGCCAACTGCGATTGCTGCTGCTAATGATAATGATGATGATGAGGAAATGGAAGGAGAAGCAGATGAGCACAGCAGTTGTGCCCACACCAAACATCCCGTGCTTAATTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

191

Amino Acids

21.29

Weight (kDa)

5.01

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	1 - 29	8.3e-12	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	74 - 141	3.8e-10	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	15
AciI	CCGC	3 cut(s)	33, 63, 93
AclWI	GGATC	1 cut(s)	411
AcyI	GRCGYC	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	69, 72
AgsI	TTSAA	2 cut(s)	233, 260
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	5 cut(s)	19, 280, 343, 365, 388
AluI	AGCT	5 cut(s)	19, 280, 343, 365, 388
Alw21I	GWGCWC	3 cut(s)	21, 282, 531
AlwI	GGATC	1 cut(s)	411
ApeKI	GCWGC	5 cut(s)	152, 340, 425, 476, 479
AspLEI	GCGC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	544
BanII	GRGCYC	3 cut(s)	21, 51, 282
Bbv12I	GWGCWC	3 cut(s)	21, 282, 531
BbvI	GCAGC	5 cut(s)	139, 352, 437, 463, 466
BccI	CCATC	2 cut(s)	343, 427
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	88
BisI	GCNGC	7 cut(s)	34, 94, 153, 341, 426, 477, 480
BlsI	GCNGC	7 cut(s)	35, 95, 154, 342, 427, 478, 481
BmsI	GCATC	1 cut(s)	295
BpuEI	CTTGAG	2 cut(s)	137, 311
BsaHI	GRCGYC	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 72
Bse1I	ACTGG	2 cut(s)	196, 306
BseGI	GGATG	3 cut(s)	274, 310, 553
BseLI	CCNNNNNNNGG	2 cut(s)	69, 72
BseNI	ACTGG	2 cut(s)	196, 306
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	5 cut(s)	139, 352, 437, 463, 466
BseYI	CCCAGC	1 cut(s)	388
Bsh1236I	CGCG	1 cut(s)	15
BsiHKAI	GWGCWC	3 cut(s)	21, 282, 531
BslI	CCNNNNNNNGG	2 cut(s)	69, 72
BsmI	GAATGC	1 cut(s)	169
Bsp1286I	GDGCHC	5 cut(s)	21, 51, 282, 531, 544
Bsp143I	GATC	2 cut(s)	326, 403
Bsp68I	TCGCGA	1 cut(s)	15
BspACI	CCGC	3 cut(s)	33, 63, 93
BspFNI	CGCG	1 cut(s)	15
BspHI	TCATGA	1 cut(s)	345
BspPI	GGATC	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	196, 306
BssMI	GATC	2 cut(s)	326, 403
BssNI	GRCGYC	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	13, 17
BstDEI	CTNAG	1 cut(s)	210
BstF5I	GGATG	3 cut(s)	274, 310, 553
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	2 cut(s)	329, 406
BstMBI	GATC	2 cut(s)	326, 403
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 460, 476
BstNSI	RCATGY	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	88
BstSLI	GKGCMC	1 cut(s)	544
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	5 cut(s)	139, 352, 437, 463, 466
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BtsCI	GGATG	3 cut(s)	274, 310, 553
BtsIMutI	CAGTG	1 cut(s)	428
BtuMI	TCGCGA	1 cut(s)	15
Cac8I	GCNNGC	2 cut(s)	13, 17
CciI	TCATGA	1 cut(s)	345
CfoI	GCGC	1 cut(s)	209
CseI	GACGC	2 cut(s)	25, 346
CviAII	CATG	2 cut(s)	204, 346
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	328, 405
DpnII	GATC	2 cut(s)	326, 403
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	2 cut(s)	19, 280
Eco24I	GRGCYC	3 cut(s)	21, 51, 282
Eco53kI	GAGCTC	2 cut(s)	19, 280
EcoICRI	GAGCTC	2 cut(s)	19, 280
EcoT38I	GRGCYC	3 cut(s)	21, 51, 282
FaeI	CATG	2 cut(s)	207, 349
FaiI	YATR	5 cut(s)	135, 177, 205, 311, 347
FatI	CATG	2 cut(s)	203, 345
Fnu4HI	GCNGC	7 cut(s)	34, 94, 153, 341, 426, 477, 480
FokI	GGATG	3 cut(s)	281, 317, 540
FriOI	GRGCYC	3 cut(s)	21, 51, 282
Fsp4HI	GCNGC	7 cut(s)	34, 94, 153, 341, 426, 477, 480
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	7 cut(s)	34, 94, 153, 341, 426, 477, 480
GsaI	CCCAGC	1 cut(s)	392
HgaI	GACGC	2 cut(s)	25, 346
HhaI	GCGC	1 cut(s)	209
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	207, 349
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HinfI	GANTC	1 cut(s)	229
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188III	TCNNGA	5 cut(s)	14, 116, 266, 330, 346
Hpy8I	GTNNAC	1 cut(s)	239
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	370, 394, 436, 506
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 460, 476
HpyF3I	CTNAG	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	207, 349
HspAI	GCGC	1 cut(s)	207
Kzo9I	GATC	2 cut(s)	326, 403
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	8 cut(s)	140, 177, 233, 251, 287, 374, 464, 468
Lsp1109I	GCAGC	5 cut(s)	139, 352, 437, 463, 466
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	122, 271
MalI	GATC	2 cut(s)	328, 405
MboI	GATC	2 cut(s)	326, 403
MboII	GAAGA	4 cut(s)	16, 49, 155, 407
MflI	RGATCY	1 cut(s)	403
MhlI	GDGCHC	5 cut(s)	21, 51, 282, 531, 544
MluCI	AATT	3 cut(s)	178, 185, 565
MnlI	CCTC	4 cut(s)	34, 66, 133, 496
MseI	TTAA	2 cut(s)	314, 564
Mva1269I	GAATGC	1 cut(s)	169
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	25, 460, 476
NdeII	GATC	2 cut(s)	326, 403
NlaIII	CATG	2 cut(s)	207, 349
NmuCI	GTSAC	1 cut(s)	271
NruI	TCGCGA	1 cut(s)	15
NspI	RCATGY	1 cut(s)	207
PagI	TCATGA	1 cut(s)	345
PctI	GAATGC	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	7 cut(s)	35, 95, 154, 342, 427, 478, 481
Psp124BI	GAGCTC	2 cut(s)	21, 282
PspFI	CCCAGC	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	403
RruI	TCGCGA	1 cut(s)	15
SacI	GAGCTC	2 cut(s)	21, 282
SaqAI	TTAA	2 cut(s)	314, 564
SatI	GCNGC	7 cut(s)	34, 94, 153, 341, 426, 477, 480
Sau3AI	GATC	2 cut(s)	326, 403
SduI	GDGCHC	5 cut(s)	21, 51, 282, 531, 544
SetI	ASST	6 cut(s)	21, 45, 282, 345, 367, 390
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	1 cut(s)	88
SmlI	CTYRAG	2 cut(s)	116, 290
SmoI	CTYRAG	2 cut(s)	116, 290
Sse9I	AATT	3 cut(s)	178, 185, 565
SsiI	CCGC	3 cut(s)	33, 63, 93
SspMI	CTAG	1 cut(s)	242
SstI	GAGCTC	2 cut(s)	21, 282
TaqI	TCGA	1 cut(s)	39
TasI	AATT	3 cut(s)	178, 185, 565
TauI	GCSGC	2 cut(s)	36, 96
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	314, 564
Tru9I	TTAA	2 cut(s)	314, 564
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	5 cut(s)	152, 340, 425, 476, 479
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	435
XceI	RCATGY	1 cut(s)	207
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.