Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Reverse (-)

71043822 .. 71044430

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0588000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCCGACGGCCAGCCACCGGTGAATATAAAGAAGCAAGCGACGTCGGAGATCTGCAACATATGCTGGGAAGAATTGCAGGAAGTGAACCGTGTCAAGGAGATGCCTAAGTGCAAGCACATGTTTCACGCTCACTGTATCAACGCTTGGCTGGTAAAGAATGCTTGCTACCCACTGTGCCAGAGATTCGCTGTTGTGCCGGACCTCATCTCCATACTTGTTCAGGAGTACGAAGATGATCATGATGATGATGGTCCTTATGTTAGCATTCATGACCTACTAATGGAGGATGATGATGAGACAGATGATATCATCCCCATACTCATACCAGATCATGAAAATGGTGTTGATCCTATAGGTCTTGGAAATGTTGATAACGCTGAAGATGTATTAGTGGGTTTAGTAGAGGAACATATAAGGGACTATATTCCTATACTCGTGACATATCATCATGACGATGGTCTTGATCCTATGAGTCTGGGAAATGATGATGACTTTGATATGGGATTGGACCAAGAAGAGGATGCATACATTGAGAGCTTGGTGTTTTCGTCGTCTGACGATGACTGGTACGGACAAGACGACACCGAAACTCAAAATTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

202

Amino Acids

22.96

Weight (kDa)

4.05

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	10 - 61	1.1e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	19 - 60	7.7e-08	Ring finger domain
zf-RING_11	PF17123	19 - 47	8.4e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AclWI	GGATC	2 cut(s)	344, 461
AcoI	YGGCCR	2 cut(s)	3, 10
AcsI	RAATTY	1 cut(s)	598
AcuI	CTGAAG	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	2 cut(s)	230, 572
AfiI	CCNNNNNNNGG	4 cut(s)	19, 97, 283, 520
AflIII	ACRYGT	1 cut(s)	120
AgeI	ACCGGT	1 cut(s)	19
AluBI	AGCT	1 cut(s)	540
AluI	AGCT	1 cut(s)	540
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	2 cut(s)	344, 461
AoxI	GGCC	2 cut(s)	3, 10
ApoI	RAATTY	1 cut(s)	598
AsiGI	ACCGGT	1 cut(s)	19
AspS9I	GGNCC	3 cut(s)	202, 254, 511
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	3 cut(s)	202, 254, 511
BauI	CACGAG	1 cut(s)	437
BccI	CCATC	2 cut(s)	245, 452
BceAI	ACGGC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	354
BglII	AGATCT	1 cut(s)	51
Bme18I	GGWCC	3 cut(s)	202, 254, 511
BmgT120I	GGNCC	3 cut(s)	202, 254, 511
BmsI	GCATC	2 cut(s)	93, 514
BoxI	GACNNNNGTC	1 cut(s)	459
BsaHI	GRCGYC	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 97, 283, 520
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	572
BseGI	GGATG	3 cut(s)	295, 312, 529
BseLI	CCNNNNNNNGG	4 cut(s)	19, 97, 283, 520
BseNI	ACTGG	1 cut(s)	572
BseYI	CCCAGC	1 cut(s)	66
BshFI	GGCC	2 cut(s)	5, 12
BshTI	ACCGGT	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	20, 200
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	4 cut(s)	19, 97, 283, 520
BsmAI	GTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	434
BsmI	GAATGC	2 cut(s)	166, 267
BsnI	GGCC	2 cut(s)	5, 12
Bsp143I	GATC	5 cut(s)	51, 238, 331, 349, 466
BspANI	GGCC	2 cut(s)	5, 12
BspHI	TCATGA	4 cut(s)	241, 271, 334, 451
BspPI	GGATC	2 cut(s)	344, 461
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	572
BssAI	RCCGGY	1 cut(s)	19
BssMI	GATC	5 cut(s)	51, 238, 331, 349, 466
BssNI	GRCGYC	1 cut(s)	44
BssSI	CACGAG	1 cut(s)	437
Bst2BI	CACGAG	1 cut(s)	437
Bst4CI	ACNGT	3 cut(s)	92, 137, 177
Bst6I	CTCTTC	1 cut(s)	513
BstACI	GRCGYC	1 cut(s)	44
BstAPI	GCANNNNNTGC	1 cut(s)	63
BstC8I	GCNNGC	4 cut(s)	14, 39, 116, 166
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	3 cut(s)	295, 312, 529
BstKTI	GATC	5 cut(s)	54, 241, 334, 352, 469
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	5 cut(s)	51, 238, 331, 349, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstNSI	RCATGY	1 cut(s)	124
BstPAI	GACNNNNGTC	1 cut(s)	459
BstSFI	CTRYAG	1 cut(s)	354
BstX2I	RGATCY	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	5, 12
BtsCI	GGATG	3 cut(s)	295, 312, 529
BtsIMutI	CAGTG	2 cut(s)	133, 173
Cac8I	GCNNGC	4 cut(s)	14, 39, 116, 166
CciI	TCATGA	4 cut(s)	241, 271, 334, 451
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	3 cut(s)	202, 254, 511
Csp6I	GTAC	2 cut(s)	229, 571
CspAI	ACCGGT	1 cut(s)	19
CviAII	CATG	5 cut(s)	121, 242, 272, 335, 452
CviJI	RGCY	5 cut(s)	5, 12, 16, 151, 540
CviKI_1	RGCY	5 cut(s)	5, 12, 16, 151, 540
CviQI	GTAC	2 cut(s)	229, 571
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	5 cut(s)	53, 240, 333, 351, 468
DpnII	GATC	5 cut(s)	51, 238, 331, 349, 466
EaeI	YGGCCR	2 cut(s)	3, 10
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	3 cut(s)	202, 254, 511
Eco57I	CTGAAG	1 cut(s)	402
EcoRV	GATATC	1 cut(s)	310
EcoT22I	ATGCAT	1 cut(s)	529
FaeI	CATG	5 cut(s)	124, 245, 275, 338, 455
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	5 cut(s)	120, 241, 271, 334, 451
FauNDI	CATATG	1 cut(s)	62
FbaI	TGATCA	1 cut(s)	238
FokI	GGATG	3 cut(s)	299, 302, 536
GsaI	CCCAGC	1 cut(s)	70
HaeIII	GGCC	2 cut(s)	5, 12
HapII	CCGG	2 cut(s)	20, 200
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	5 cut(s)	124, 245, 275, 338, 455
HinfI	GANTC	2 cut(s)	186, 475
HpaII	CCGG	2 cut(s)	20, 200
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	49, 559
Hpy188III	TCNNGA	7 cut(s)	224, 242, 272, 335, 439, 452, 464
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	4 cut(s)	11, 46, 49, 556
HpyCH4III	ACNGT	3 cut(s)	92, 137, 177
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	4 cut(s)	57, 79, 114, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	5 cut(s)	124, 245, 275, 338, 455
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	5 cut(s)	51, 238, 331, 349, 466
LweI	GCATC	2 cut(s)	93, 514
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	5 cut(s)	53, 240, 333, 351, 468
MboI	GATC	5 cut(s)	51, 238, 331, 349, 466
MboII	GAAGA	4 cut(s)	83, 245, 395, 530
MflI	RGATCY	1 cut(s)	51
MluCI	AATT	2 cut(s)	74, 598
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	4 cut(s)	215, 280, 400, 514
Mph1103I	ATGCAT	1 cut(s)	529
MslI	CAYNNNNRTG	3 cut(s)	246, 339, 456
MspI	CCGG	2 cut(s)	20, 200
Mva1269I	GAATGC	2 cut(s)	166, 267
MwoI	GCNNNNNNNGC	1 cut(s)	63
NdeI	CATATG	1 cut(s)	62
NdeII	GATC	5 cut(s)	51, 238, 331, 349, 466
NlaIII	CATG	5 cut(s)	124, 245, 275, 338, 455
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	529
NspI	RCATGY	1 cut(s)	124
PagI	TCATGA	4 cut(s)	241, 271, 334, 451
PciI	ACATGT	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PctI	GAATGC	2 cut(s)	166, 267
PfeI	GAWTC	1 cut(s)	186
PinAI	ACCGGT	1 cut(s)	19
PleI	GAGTC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	483
PscI	ACATGT	1 cut(s)	120
PshAI	GACNNNNGTC	1 cut(s)	459
PspFI	CCCAGC	1 cut(s)	66
PspPI	GGNCC	3 cut(s)	202, 254, 511
PsuI	RGATCY	1 cut(s)	51
RsaI	GTAC	2 cut(s)	230, 572
RsaNI	GTAC	2 cut(s)	229, 571
RseI	CAYNNNNRTG	3 cut(s)	246, 339, 456
Sau3AI	GATC	5 cut(s)	51, 238, 331, 349, 466
Sau96I	GGNCC	3 cut(s)	202, 254, 511
SchI	GAGTC	1 cut(s)	484
SetI	ASST	5 cut(s)	47, 207, 279, 361, 542
SfaNI	GCATC	2 cut(s)	93, 514
SfcI	CTRYAG	1 cut(s)	354
SgrAI	CRCCGGYG	1 cut(s)	19
SinI	GGWCC	3 cut(s)	202, 254, 511
SmiMI	CAYNNNNRTG	3 cut(s)	246, 339, 456
Sse9I	AATT	2 cut(s)	74, 598
TaaI	ACNGT	3 cut(s)	92, 137, 177
TaiI	ACGT	1 cut(s)	47
TasI	AATT	2 cut(s)	74, 598
TfiI	GAWTC	1 cut(s)	186
TscAI	CASTG	2 cut(s)	140, 180
TseFI	GTSAC	1 cut(s)	439
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	260, 351
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	2 cut(s)	140, 180
VpaK11BI	GGWCC	3 cut(s)	202, 254, 511
XapI	RAATTY	1 cut(s)	598
XceI	RCATGY	1 cut(s)	124
ZraI	GACGTC	1 cut(s)	45
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.