RchiOBHm_Chr2g0175851

Truncated transcription factor CAULIFLOWER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001081
Physical Location & Seq
Reverse (-)
87838373 .. 87839445
1073 bp
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UTR
Exon/CDS
Intron
PRQ54289

Sequence Viewer

Length: 309 bp
ATGGGTAGAGGGAAGGTGCAACTGAAGCGAATCGAGGACAAGATCAGGCGCCAAGTGACTTTCTCCAAGAGAAGGACTGGGCTGATGAAGAAGGCTCGCGAGCTCTCCGTGCTGTGCGGCGTCGAGGTTGGGCTCATCATCTTCTCCGCCAAAGGGAGGCTCTACGAGTTCTGTAGCGGCGATAGGTACGCCGTCCGATCTCTCTTTCTTAATTTCTCGGCCAGCGAGTATTGCTATGTTTCCCTTTTTACTTTCAACCGCTTGGTTAATACTTTTCTATATTCTATGCAACAAATATCTAGTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

102

Amino Acids

11.85

Weight (kDa)

10.15

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 2e-26 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 48
AccII CGCG 1 cut(s) 99
AciI CCGC 4 cut(s) 117, 147, 177, 259
AcoI YGGCCR 1 cut(s) 219
AcuI CTGAAG 1 cut(s) 44
AcyI GRCGYC 2 cut(s) 49, 120
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 3 cut(s) 72, 153, 156
AgsI TTSAA 1 cut(s) 256
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw21I GWGCWC 1 cut(s) 105
AoxI GGCC 1 cut(s) 219
ArsI GACNNNNNNTTYG 1 cut(s) 286
AspLEI GCGC 1 cut(s) 51
BanI GGYRCC 1 cut(s) 48
BanII GRGCYC 2 cut(s) 105, 135
Bbv12I GWGCWC 1 cut(s) 105
BceAI ACGGC 1 cut(s) 176
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 52
BisI GCNGC 2 cut(s) 118, 178
BlsI GCNGC 2 cut(s) 119, 179
BmiI GGNNCC 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 87
BsaHI GRCGYC 2 cut(s) 49, 120
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 153, 156
Bse1I ACTGG 1 cut(s) 82
BseLI CCNNNNNNNGG 3 cut(s) 72, 153, 156
BseNI ACTGG 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 221
BshNI GGYRCC 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 105
BslI CCNNNNNNNGG 3 cut(s) 72, 153, 156
BsnI GGCC 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 105, 135
Bsp143I GATC 2 cut(s) 42, 197
Bsp68I TCGCGA 1 cut(s) 99
BspACI CCGC 4 cut(s) 117, 147, 177, 259
BspANI GGCC 1 cut(s) 221
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 82
BssMI GATC 2 cut(s) 42, 197
BssNI GRCGYC 2 cut(s) 49, 120
BstACI GRCGYC 2 cut(s) 49, 120
BstC8I GCNNGC 3 cut(s) 97, 101, 223
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 2 cut(s) 45, 200
BstMBI GATC 2 cut(s) 42, 197
BstMWI GCNNNNNNNGC 3 cut(s) 25, 109, 231
BstSFI CTRYAG 1 cut(s) 172
BstUI CGCG 1 cut(s) 99
BsuRI GGCC 1 cut(s) 221
BtuMI TCGCGA 1 cut(s) 99
Cac8I GCNNGC 3 cut(s) 97, 101, 223
CfoI GCGC 1 cut(s) 51
CseI GACGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 187
CviJI RGCY 6 cut(s) 82, 95, 103, 133, 160, 221
CviKI_1 RGCY 6 cut(s) 82, 95, 103, 133, 160, 221
CviQI GTAC 1 cut(s) 187
DinI GGCGCC 1 cut(s) 50
DpnI GATC 2 cut(s) 44, 199
DpnII GATC 2 cut(s) 42, 197
EaeI YGGCCR 1 cut(s) 219
EciI GGCGGA 1 cut(s) 136
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 2 cut(s) 105, 135
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 103
EcoT38I GRGCYC 2 cut(s) 105, 135
EgeI GGCGCC 1 cut(s) 50
EheI GGCGCC 1 cut(s) 50
FaiI YATR 3 cut(s) 237, 280, 287
Fnu4HI GCNGC 2 cut(s) 118, 178
FriOI GRGCYC 2 cut(s) 105, 135
Fsp4HI GCNGC 2 cut(s) 118, 178
FspBI CTAG 1 cut(s) 300
GlaI GCGC 1 cut(s) 50
GluI GCNGC 2 cut(s) 118, 178
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 1 cut(s) 221
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 51
Hin1I GRCGYC 2 cut(s) 49, 120
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HinfI GANTC 1 cut(s) 30
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 1 cut(s) 98
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 7, 66, 85
HpyCH4V TGCA 2 cut(s) 19, 289
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 109, 231
Hsp92I GRCGYC 2 cut(s) 49, 120
HspAI GCGC 1 cut(s) 49
KasI GGCGCC 1 cut(s) 48
Kzo9I GATC 2 cut(s) 42, 197
LpnPI CCDG 3 cut(s) 31, 63, 235
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 2 cut(s) 55, 302
MalI GATC 2 cut(s) 44, 199
MboI GATC 2 cut(s) 42, 197
MboII GAAGA 2 cut(s) 100, 133
MhlI GDGCHC 2 cut(s) 105, 135
MluCI AATT 1 cut(s) 211
Mly113I GGCGCC 1 cut(s) 49
MnlI CCTC 3 cut(s) 28, 118, 150
MseI TTAA 2 cut(s) 210, 267
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 3 cut(s) 25, 109, 231
NarI GGCGCC 1 cut(s) 49
NdeII GATC 2 cut(s) 42, 197
NlaIV GGNNCC 1 cut(s) 50
NmeAIII GCCGAG 1 cut(s) 197
NmuCI GTSAC 2 cut(s) 55, 302
NruI TCGCGA 1 cut(s) 99
PfeI GAWTC 1 cut(s) 30
PkrI GCNGC 2 cut(s) 119, 179
PluTI GGCGCC 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 50
RruI TCGCGA 1 cut(s) 99
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 2 cut(s) 210, 267
SatI GCNGC 2 cut(s) 118, 178
Sau3AI GATC 2 cut(s) 42, 197
SduI GDGCHC 2 cut(s) 105, 135
SetI ASST 4 cut(s) 18, 105, 129, 188
SfcI CTRYAG 1 cut(s) 172
SfoI GGCGCC 1 cut(s) 50
Sse9I AATT 1 cut(s) 211
SsiI CCGC 4 cut(s) 117, 147, 177, 259
SspDI GGCGCC 1 cut(s) 48
SspMI CTAG 1 cut(s) 300
SstI GAGCTC 1 cut(s) 105
TaqI TCGA 2 cut(s) 33, 123
TasI AATT 1 cut(s) 211
TauI GCSGC 2 cut(s) 120, 180
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 2 cut(s) 210, 267
Tru9I TTAA 2 cut(s) 210, 267
TseFI GTSAC 2 cut(s) 55, 302
Tsp45I GTSAC 2 cut(s) 55, 302
TspDTI ATGAA 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 97
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.