Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Reverse (-)

5962638 .. 5979542

Gene Structure 16905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1037100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGGCGAGGGAAGGTGCAGCTGAAGCGAATCGACGACAAGATCAGGCGGCAAGTGACGTTTTCGAAGCGGAGAACCGGGCTGATAAAGAAGGCACGTGAGCTGTCCGTGCTCTGCGGGGTGGACGTCGGCCTTGTCATCTTCTCCCCCAAGGGGAGGCTCTACGAGTTCTGTAGCGGCGAGAGTTTTGGAAAGCTTGTCGAGCGTTACCAGATACATAATGATGAGGAAATTGGTACTTCCAAGGATGCTGGTGGTACTGACAAGAAGAATAATTCCGAAGGGAGTGGTCTCCGCACAGGCGCTAACCAATCTCTGAAAATGATTCAAAGTGATATGGAAGCACAAGACATTGAAAATCTAGATATTCCAGAGCTTACCCAGCTTGAGGAGGAATTGGATGCAGTTTTAAGACGAACAAGATCAAGAAAGACACAGCTGATGACGGAAACCTGTACAGCTCTTATCGAGACGGAAAAACAGCTGAAAGAAGAGAAGCTTCTCCTAGAAAATGAGATTGCAGCACTGAAGCTGAAGCAGCAGCAGAGCAAGGACCGAGCTGCCGACGAGGAACCAGATCAGCAGAGCACTTTCGCCGCTAATAACACCACCACCACCACCACCAACAGCTGCTGCAGCGACGACAATGTTCCGGCCATCAAACTTCATTTATTTCTTTCTGAAAAAAGAAAACATAACGCGGACACGGACACGGACCAAACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

243

Amino Acids

27.21

Weight (kDa)

5.81

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	102 - 173	1.2e-09	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccII	CGCG	1 cut(s)	701
AciI	CCGC	7 cut(s)	49, 70, 117, 177, 295, 597, 701
AcoI	YGGCCR	1 cut(s)	654
AcuI	CTGAAG	3 cut(s)	44, 548, 554
AcvI	CACGTG	1 cut(s)	98
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	3 cut(s)	238, 259, 457
AfiI	CCNNNNNNNGG	3 cut(s)	153, 156, 388
AgsI	TTSAA	2 cut(s)	329, 356
Alw21I	GWGCWC	2 cut(s)	114, 590
Alw26I	GTCTC	2 cut(s)	296, 464
AlwNI	CAGNNNCTG	1 cut(s)	633
AoxI	GGCC	2 cut(s)	130, 654
ApeKI	GCWGC	8 cut(s)	19, 521, 538, 541, 560, 630, 633, 636
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	553, 715
AsuC2I	CCSGG	1 cut(s)	79
AsuII	TTCGAA	1 cut(s)	65
AvaII	GGWCC	2 cut(s)	553, 715
BbrPI	CACGTG	1 cut(s)	98
Bbv12I	GWGCWC	2 cut(s)	114, 590
BbvI	GCAGC	8 cut(s)	31, 533, 547, 550, 553, 617, 620, 648
BccI	CCATC	1 cut(s)	665
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	296, 464
BfaI	CTAG	2 cut(s)	362, 506
BfmI	CTRYAG	2 cut(s)	172, 634
BfoI	RGCGCY	1 cut(s)	306
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	2 cut(s)	553, 715
BmgT120I	GGNCC	2 cut(s)	553, 715
BmiI	GGNNCC	1 cut(s)	573
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	2 cut(s)	238, 391
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	150, 243
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 156, 388
BseDI	CCNNGG	2 cut(s)	150, 243
BseGI	GGATG	2 cut(s)	253, 406
BseLI	CCNNNNNNNGG	3 cut(s)	153, 156, 388
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	8 cut(s)	31, 533, 547, 550, 553, 617, 620, 648
BseYI	CCCAGC	1 cut(s)	381
BsgI	GTGCAG	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	701
BshFI	GGCC	2 cut(s)	132, 656
BsiHKAI	GWGCWC	2 cut(s)	114, 590
BsiSI	CCGG	2 cut(s)	78, 653
BslI	CCNNNNNNNGG	3 cut(s)	153, 156, 388
BsmAI	GTCTC	2 cut(s)	296, 464
BsmBI	CGTCTC	1 cut(s)	464
BsnI	GGCC	2 cut(s)	132, 656
Bso31I	GGTCTC	1 cut(s)	296
Bsp119I	TTCGAA	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	114, 590
Bsp1407I	TGTACA	1 cut(s)	455
Bsp143I	GATC	3 cut(s)	42, 422, 577
BspACI	CCGC	7 cut(s)	49, 70, 117, 177, 295, 597, 701
BspANI	GGCC	2 cut(s)	132, 656
BspFNI	CGCG	1 cut(s)	701
BspLI	GGNNCC	1 cut(s)	573
BspMAI	CTGCAG	1 cut(s)	638
BspT104I	TTCGAA	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	296
BsrGI	TGTACA	1 cut(s)	455
BssECI	CCNNGG	2 cut(s)	150, 243
BssMI	GATC	3 cut(s)	42, 422, 577
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	2 cut(s)	150, 243
Bst6I	CTCTTC	1 cut(s)	486
BstACI	GRCGYC	1 cut(s)	126
BstAUI	TGTACA	1 cut(s)	455
BstBAI	YACGTR	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	253, 406
BstFNI	CGCG	1 cut(s)	701
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	3 cut(s)	45, 425, 580
BstMAI	GTCTC	2 cut(s)	296, 464
BstMBI	GATC	3 cut(s)	42, 422, 577
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 109, 202, 382, 538, 636
BstSCI	CCNGG	1 cut(s)	77
BstSFI	CTRYAG	2 cut(s)	172, 634
BstUI	CGCG	1 cut(s)	701
BstV1I	GCAGC	8 cut(s)	31, 533, 547, 550, 553, 617, 620, 648
BsuRI	GGCC	2 cut(s)	132, 656
BtsCI	GGATG	2 cut(s)	253, 406
BtsIMutI	CAGTG	1 cut(s)	524
CaiI	CAGNNNCTG	1 cut(s)	633
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	553, 715
Csp6I	GTAC	3 cut(s)	237, 258, 456
CviQI	GTAC	3 cut(s)	237, 258, 456
DpnI	GATC	3 cut(s)	44, 424, 579
DpnII	GATC	3 cut(s)	42, 422, 577
EaeI	YGGCCR	1 cut(s)	654
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco130I	CCWWGG	2 cut(s)	150, 243
Eco31I	GGTCTC	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	553, 715
Eco57I	CTGAAG	3 cut(s)	44, 548, 554
Eco72I	CACGTG	1 cut(s)	98
EcoT14I	CCWWGG	2 cut(s)	150, 243
ErhI	CCWWGG	2 cut(s)	150, 243
Esp3I	CGTCTC	1 cut(s)	464
FaiI	YATR	3 cut(s)	219, 338, 696
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FauI	CCCGC	1 cut(s)	110
FokI	GGATG	2 cut(s)	260, 413
FspBI	CTAG	2 cut(s)	362, 506
GlaI	GCGC	1 cut(s)	304
GsaI	CCCAGC	1 cut(s)	385
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	132, 656
HapII	CCGG	2 cut(s)	78, 653
HhaI	GCGC	1 cut(s)	305
Hin1I	GRCGYC	1 cut(s)	126
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HindIII	AAGCTT	2 cut(s)	194, 497
HinfI	GANTC	2 cut(s)	30, 325
HpaII	CCGG	2 cut(s)	78, 653
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	280, 318, 682
Hpy188III	TCNNGA	4 cut(s)	362, 371, 426, 469
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	4 cut(s)	38, 131, 569, 644
HpyAV	CCTTC	3 cut(s)	7, 85, 275
HpyCH4IV	ACGT	3 cut(s)	59, 97, 126
HpyCH4V	TGCA	4 cut(s)	19, 404, 521, 636
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 109, 202, 382, 538, 636
HpySE526I	ACGT	3 cut(s)	59, 97, 126
Hsp92I	GRCGYC	1 cut(s)	126
HspAI	GCGC	1 cut(s)	303
Kzo9I	GATC	3 cut(s)	42, 422, 577
Lsp1109I	GCAGC	8 cut(s)	31, 533, 547, 550, 553, 617, 620, 648
LweI	GCATC	2 cut(s)	238, 391
MaeI	CTAG	2 cut(s)	362, 506
MaeII	ACGT	3 cut(s)	59, 97, 126
MaeIII	GTNAC	2 cut(s)	55, 206
MalI	GATC	3 cut(s)	44, 424, 579
MboI	GATC	3 cut(s)	42, 422, 577
MboII	GAAGA	3 cut(s)	133, 280, 503
MhlI	GDGCHC	2 cut(s)	114, 590
MluCI	AATT	3 cut(s)	231, 274, 395
MnlI	CCTC	5 cut(s)	150, 220, 382, 385, 562
MseI	TTAA	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	4 cut(s)	22, 439, 484, 630
MspI	CCGG	2 cut(s)	78, 653
MspR9I	CCNGG	1 cut(s)	79
MvnI	CGCG	1 cut(s)	701
MwoI	GCNNNNNNNGC	6 cut(s)	25, 109, 202, 382, 538, 636
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	3 cut(s)	42, 422, 577
NlaIV	GGNNCC	1 cut(s)	573
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	30, 325
PmaCI	CACGTG	1 cut(s)	98
PmlI	CACGTG	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	98
PspCI	CACGTG	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	573
PspPI	GGNCC	2 cut(s)	553, 715
PstI	CTGCAG	1 cut(s)	638
PstNI	CAGNNNCTG	1 cut(s)	633
PvuII	CAGCTG	4 cut(s)	22, 439, 484, 630
RsaI	GTAC	3 cut(s)	238, 259, 457
RsaNI	GTAC	3 cut(s)	237, 258, 456
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	1 cut(s)	410
Sau3AI	GATC	3 cut(s)	42, 422, 577
Sau96I	GGNCC	2 cut(s)	553, 715
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	2 cut(s)	114, 590
SfaNI	GCATC	2 cut(s)	238, 391
SfcI	CTRYAG	2 cut(s)	172, 634
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	2 cut(s)	553, 715
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	3 cut(s)	231, 274, 395
SsiI	CCGC	7 cut(s)	49, 70, 117, 177, 295, 597, 701
SspMI	CTAG	2 cut(s)	362, 506
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	2 cut(s)	150, 243
TaiI	ACGT	3 cut(s)	62, 100, 129
TaqI	TCGA	4 cut(s)	33, 65, 201, 468
TaqII	GACCGA	1 cut(s)	570
TasI	AATT	3 cut(s)	231, 274, 395
TatI	WGTACW	1 cut(s)	455
TauI	GCSGC	3 cut(s)	52, 180, 599
TfiI	GAWTC	2 cut(s)	30, 325
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	8 cut(s)	19, 521, 538, 541, 560, 630, 633, 636
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	656
TspGWI	ACGGA	5 cut(s)	97, 461, 488, 722, 728
TspRI	CASTG	1 cut(s)	531
VpaK11BI	GGWCC	2 cut(s)	553, 715
XbaI	TCTAGA	1 cut(s)	361
XspI	CTAG	2 cut(s)	362, 506
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.