Rmu_sc0003558.1_g000005

Truncated transcription factor CAULIFLOWER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003558.1
OG0001081
Physical Location & Seq
Forward (+)
17629 .. 20289
2661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003558.1_g000005.1.cds

Sequence Viewer

Length: 507 bp
atgggtagagggaaggtgcaactgaagcgaatcgaggacaagatcaggcgccaagtgactttctccaagagaaggactgggctgatgaagaaggctcgcgagctctccgtgctgtgcggcgtcgaggttgggctcatcatcttctccgccaaagggaggctctacgagttctgtagcggcgatagaaaggatggttatttacccgaggccccgagcttaggagaggaggcatcaatgcatggctggccgaaaccgatggacactgatatgtttgatgacaccgagcgtcattcatggaaagatatcacgcccgcctgggctgtgggaagcaattactgtctaaccgctgttggaatgttgcctggagcatgtgattctctgcttcaatctcggcgagctgattttgggcagcaagtgtcgcgacgtgctccggaacggcctgttgtttcaatgtctcactttgagttcgatcgctgccactgggtcgttaacaagcctttcagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

168

Amino Acids

19.14

Weight (kDa)

9.34

Isoelectric Point (pI)

58.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 48
AccII CGCG 2 cut(s) 99, 421
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 5 cut(s) 117, 147, 177, 312, 345
AcoI YGGCCR 1 cut(s) 245
AcuI CTGAAG 1 cut(s) 44
AcyI GRCGYC 2 cut(s) 49, 120
AfiI CCNNNNNNNGG 4 cut(s) 72, 153, 156, 218
AgsI TTSAA 2 cut(s) 386, 450
AjiI CACGTC 1 cut(s) 425
AjnI CCWGG 2 cut(s) 314, 361
AluBI AGCT 3 cut(s) 103, 216, 398
AluI AGCT 3 cut(s) 103, 216, 398
Alw21I GWGCWC 2 cut(s) 105, 430
Alw26I GTCTC 1 cut(s) 459
Ama87I CYCGRG 2 cut(s) 203, 211
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 3 cut(s) 207, 245, 437
ApeKI GCWGC 2 cut(s) 409, 474
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 208
AvaI CYCGRG 2 cut(s) 203, 211
BanI GGYRCC 1 cut(s) 48
BanII GRGCYC 2 cut(s) 105, 135
Bbv12I GWGCWC 2 cut(s) 105, 430
BbvI GCAGC 2 cut(s) 421, 461
BccI CCATC 2 cut(s) 185, 250
BceAI ACGGC 1 cut(s) 452
BciT130I CCWGG 2 cut(s) 316, 363
BcoDI GTCTC 1 cut(s) 459
BfmI CTRYAG 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 52
BisI GCNGC 4 cut(s) 118, 178, 410, 475
BlsI GCNGC 4 cut(s) 119, 179, 411, 476
Bme1390I CCNGG 2 cut(s) 316, 363
BmeT110I CYCGRG 2 cut(s) 203, 211
BmgBI CACGTC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 2 cut(s) 50, 210
BmrFI CCNGG 2 cut(s) 316, 363
BmrI ACTGGG 2 cut(s) 87, 490
BmsI GCATC 1 cut(s) 239
BmuI ACTGGG 2 cut(s) 87, 490
BpmI CTGGAG 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 217
BsaHI GRCGYC 2 cut(s) 49, 120
BsaJI CCNNGG 2 cut(s) 204, 315
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 153, 156, 218
Bse1I ACTGG 2 cut(s) 82, 485
BseAI TCCGGA 1 cut(s) 430
BseBI CCWGG 2 cut(s) 316, 363
BseDI CCNNGG 2 cut(s) 204, 315
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 4 cut(s) 72, 153, 156, 218
BseNI ACTGG 2 cut(s) 82, 485
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 2 cut(s) 421, 461
Bsh1236I CGCG 2 cut(s) 99, 421
Bsh1285I CGRYCG 1 cut(s) 472
BshFI GGCC 3 cut(s) 209, 247, 439
BshNI GGYRCC 1 cut(s) 48
BsiEI CGRYCG 1 cut(s) 472
BsiHKAI GWGCWC 2 cut(s) 105, 430
BsiHKCI CYCGRG 2 cut(s) 203, 211
BsiSI CCGG 1 cut(s) 431
BslI CCNNNNNNNGG 4 cut(s) 72, 153, 156, 218
BsmAI GTCTC 1 cut(s) 459
BsnI GGCC 3 cut(s) 209, 247, 439
BsoBI CYCGRG 2 cut(s) 203, 211
Bsp1286I GDGCHC 3 cut(s) 105, 135, 430
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 2 cut(s) 42, 469
Bsp68I TCGCGA 2 cut(s) 99, 421
BspACI CCGC 5 cut(s) 117, 147, 177, 312, 345
BspANI GGCC 3 cut(s) 209, 247, 439
BspEI TCCGGA 1 cut(s) 430
BspFNI CGCG 2 cut(s) 99, 421
BspLI GGNNCC 2 cut(s) 50, 210
BspT107I GGYRCC 1 cut(s) 48
BsrI ACTGG 2 cut(s) 82, 485
BssECI CCNNGG 2 cut(s) 204, 315
BssMI GATC 2 cut(s) 42, 469
BssNI GRCGYC 2 cut(s) 49, 120
Bst2UI CCWGG 2 cut(s) 316, 363
Bst4CI ACNGT 1 cut(s) 338
BstACI GRCGYC 2 cut(s) 49, 120
BstC8I GCNNGC 5 cut(s) 97, 101, 245, 312, 396
BstDEI CTNAG 1 cut(s) 217
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 2 cut(s) 99, 421
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 2 cut(s) 45, 472
BstMAI GTCTC 1 cut(s) 459
BstMBI GATC 2 cut(s) 42, 469
BstMCI CGRYCG 1 cut(s) 472
BstMWI GCNNNNNNNGC 4 cut(s) 25, 109, 244, 418
BstNI CCWGG 2 cut(s) 316, 363
BstNSI RCATGY 1 cut(s) 372
BstSCI CCNGG 2 cut(s) 314, 361
BstSFI CTRYAG 1 cut(s) 172
BstUI CGCG 2 cut(s) 99, 421
BstV1I GCAGC 2 cut(s) 421, 461
BsuRI GGCC 3 cut(s) 209, 247, 439
BtrI CACGTC 1 cut(s) 425
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 261, 478
BtuMI TCGCGA 2 cut(s) 99, 421
Cac8I GCNNGC 5 cut(s) 97, 101, 245, 312, 396
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 208
CseI GACGC 2 cut(s) 109, 275
CviAII CATG 3 cut(s) 239, 294, 369
DdeI CTNAG 1 cut(s) 217
DinI GGCGCC 1 cut(s) 50
DpnI GATC 2 cut(s) 44, 471
DpnII GATC 2 cut(s) 42, 469
EaeI YGGCCR 1 cut(s) 245
EciI GGCGGA 1 cut(s) 136
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 2 cut(s) 105, 135
Eco32I GATATC 1 cut(s) 304
Eco53kI GAGCTC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 44
Eco88I CYCGRG 2 cut(s) 203, 211
EcoICRI GAGCTC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 314, 361
EcoRV GATATC 1 cut(s) 304
EcoT22I ATGCAT 1 cut(s) 240
EcoT38I GRGCYC 2 cut(s) 105, 135
EgeI GGCGCC 1 cut(s) 50
EheI GGCGCC 1 cut(s) 50
FaeI CATG 3 cut(s) 242, 297, 372
FaiI YATR 4 cut(s) 240, 269, 295, 370
FatI CATG 3 cut(s) 238, 293, 368
FauI CCCGC 1 cut(s) 319
Fnu4HI GCNGC 4 cut(s) 118, 178, 410, 475
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 2 cut(s) 105, 135
Fsp4HI GCNGC 4 cut(s) 118, 178, 410, 475
GlaI GCGC 1 cut(s) 50
GluI GCNGC 4 cut(s) 118, 178, 410, 475
GsuI CTGGAG 1 cut(s) 384
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 3 cut(s) 209, 247, 439
HapII CCGG 1 cut(s) 431
HgaI GACGC 2 cut(s) 109, 275
HhaI GCGC 1 cut(s) 51
Hin1I GRCGYC 2 cut(s) 49, 120
Hin1II CATG 3 cut(s) 242, 297, 372
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HinfI GANTC 2 cut(s) 30, 374
HpaI GTTAAC 1 cut(s) 490
HpaII CCGG 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 1 cut(s) 503
Hpy188III TCNNGA 3 cut(s) 98, 420, 431
Hpy8I GTNNAC 1 cut(s) 490
Hpy99I CGWCG 2 cut(s) 125, 426
HpyAV CCTTC 3 cut(s) 7, 66, 85
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 2 cut(s) 19, 238
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 109, 244, 418
HpyF3I CTNAG 1 cut(s) 217
HpySE526I ACGT 1 cut(s) 424
Hsp92I GRCGYC 2 cut(s) 49, 120
Hsp92II CATG 3 cut(s) 242, 297, 372
HspAI GCGC 1 cut(s) 49
KasI GGCGCC 1 cut(s) 48
Kpn2I TCCGGA 1 cut(s) 430
KspAI GTTAAC 1 cut(s) 490
Kzo9I GATC 2 cut(s) 42, 469
LmnI GCTCC 2 cut(s) 365, 433
Lsp1109I GCAGC 2 cut(s) 421, 461
LweI GCATC 1 cut(s) 239
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 44, 471
MboI GATC 2 cut(s) 42, 469
MboII GAAGA 2 cut(s) 100, 133
MhlI GDGCHC 3 cut(s) 105, 135, 430
MluCI AATT 1 cut(s) 331
Mly113I GGCGCC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 6 cut(s) 28, 118, 150, 199, 217, 220
Mph1103I ATGCAT 1 cut(s) 240
MroI TCCGGA 1 cut(s) 430
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 2 cut(s) 316, 363
MvaI CCWGG 2 cut(s) 316, 363
MvnI CGCG 2 cut(s) 99, 421
MwoI GCNNNNNNNGC 4 cut(s) 25, 109, 244, 418
NarI GGCGCC 1 cut(s) 49
NdeII GATC 2 cut(s) 42, 469
NlaIII CATG 3 cut(s) 242, 297, 372
NlaIV GGNNCC 2 cut(s) 50, 210
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 55
NruI TCGCGA 2 cut(s) 99, 421
NsiI ATGCAT 1 cut(s) 240
NspI RCATGY 1 cut(s) 372
PfeI GAWTC 2 cut(s) 30, 374
PkrI GCNGC 4 cut(s) 119, 179, 411, 476
Ple19I CGATCG 1 cut(s) 472
PluTI GGCGCC 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 314, 361
PspGI CCWGG 2 cut(s) 314, 361
PspN4I GGNNCC 2 cut(s) 50, 210
PspPI GGNCC 1 cut(s) 208
PvuI CGATCG 1 cut(s) 472
RruI TCGCGA 2 cut(s) 99, 421
RseI CAYNNNNRTG 1 cut(s) 266
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 4 cut(s) 118, 178, 410, 475
Sau3AI GATC 2 cut(s) 42, 469
Sau96I GGNCC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 316, 363
SduI GDGCHC 3 cut(s) 105, 135, 430
SetI ASST 6 cut(s) 18, 105, 129, 218, 400, 427
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 1 cut(s) 172
SfoI GGCGCC 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 1 cut(s) 331
SsiI CCGC 5 cut(s) 117, 147, 177, 312, 345
SspDI GGCGCC 1 cut(s) 48
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 314, 361
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 1 cut(s) 427
TaqI TCGA 3 cut(s) 33, 123, 468
TasI AATT 1 cut(s) 331
TauI GCSGC 2 cut(s) 120, 180
TfiI GAWTC 2 cut(s) 30, 374
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 2 cut(s) 268, 485
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 409, 474
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 101, 282
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 2 cut(s) 268, 485
XceI RCATGY 1 cut(s) 372
Zsp2I ATGCAT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.