Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Reverse (-)

5359858 .. 5368782

Gene Structure 8925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1041100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGGCGAGGGAAGGTAGAGCTGAAGCTAATCGACGACAAGCTCAGGCGGCAAGTGACGTTTTCCAAGCGGAGAAGCGGACTGATCAAGAAGGCACGTGAGCTGTCCGTGCTCTGCGGGGTGGAGGTGGGCCTCGTCATCTTCTCCGCCAAGGGGAGGCTCTACGAGTTCTGTAGCGGCGAGAGTTTGGGAAAGCTTCTGGAGCGTTACCAGATGCATAGTGAAGAGGAAATTGGTGCTTCCAAGAATGCTGGTGGTACTGACAAGAAGCATAATTCGGAATGTAGTGATCTCCGCGCAGGCGCTAACCGATCTCCGAAAATGATTCAAAGTGGTAGGGAGGCACAAGACCTTGAAAATCTAGATGTTCCAGAGCTCACCCAGCTTGAAGAGGAATTAGATGCACTTTTAAGACAAACAAGATCGAGAAAGACACAGCTGATGATGGAAAACCTTACAGCTCTTATCGAGACGGAAAAACAGCTGAAAGAAGAGAAGCGTCTCATAGAAAATGAGATTGCAGCACTGAAGCTGAAGGAGCAAGCAGAGCAAGGACTGAGCTGCCGACGAGGAACCGGATCAGCAGAGCACTTCCTCCGACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

202

Amino Acids

22.69

Weight (kDa)

8.63

Isoelectric Point (pI)

60.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 57	1.1e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	114 - 173	2.2e-09	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	297
AciI	CCGC	7 cut(s)	49, 70, 78, 117, 147, 177, 295
AclWI	GGATC	1 cut(s)	586
AcuI	CTGAAG	3 cut(s)	44, 548, 554
AcvI	CACGTG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	153, 156
AgsI	TTSAA	3 cut(s)	329, 356, 389
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
Alw21I	GWGCWC	3 cut(s)	114, 378, 591
Alw26I	GTCTC	2 cut(s)	464, 506
AlwI	GGATC	1 cut(s)	586
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	521, 561
AspLEI	GCGC	2 cut(s)	299, 305
AspS9I	GGNCC	1 cut(s)	130
AsuHPI	GGTGA	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	378
BbrPI	CACGTG	1 cut(s)	98
Bbv12I	GWGCWC	3 cut(s)	114, 378, 591
BbvI	GCAGC	2 cut(s)	533, 548
BccI	CCATC	1 cut(s)	439
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	464, 506
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	306
BisI	GCNGC	4 cut(s)	50, 178, 522, 562
BlsI	GCNGC	4 cut(s)	51, 179, 523, 563
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	574
BmsI	GCATC	2 cut(s)	204, 391
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 156
BseDI	CCNNGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	153, 156
BseMII	CTCAG	2 cut(s)	58, 548
BseXI	GCAGC	2 cut(s)	533, 548
BseYI	CCCAGC	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	3 cut(s)	114, 378, 591
BsiSI	CCGG	1 cut(s)	576
BslI	CCNNNNNNNGG	2 cut(s)	153, 156
BsmAI	GTCTC	2 cut(s)	464, 506
BsmBI	CGTCTC	2 cut(s)	464, 506
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	3 cut(s)	114, 378, 591
Bsp143I	GATC	5 cut(s)	84, 289, 311, 422, 578
BspACI	CCGC	7 cut(s)	49, 70, 78, 117, 147, 177, 295
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	57, 549
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	574
BspPI	GGATC	1 cut(s)	586
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	5 cut(s)	84, 289, 311, 422, 578
BssT1I	CCWWGG	1 cut(s)	150
Bst6I	CTCTTC	3 cut(s)	219, 384, 486
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	301, 543
BstDEI	CTNAG	2 cut(s)	44, 557
BstFNI	CGCG	1 cut(s)	297
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	2 cut(s)	299, 305
BstKTI	GATC	5 cut(s)	87, 292, 314, 425, 581
BstMAI	GTCTC	2 cut(s)	464, 506
BstMBI	GATC	5 cut(s)	84, 289, 311, 422, 578
BstMWI	GCNNNNNNNGC	6 cut(s)	49, 109, 202, 382, 538, 547
BstSFI	CTRYAG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	533, 548
BsuRI	GGCC	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	524
Cac8I	GCNNGC	2 cut(s)	301, 543
CfoI	GCGC	2 cut(s)	299, 305
Cfr13I	GGNCC	1 cut(s)	130
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	258
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	2 cut(s)	44, 557
DpnI	GATC	5 cut(s)	86, 291, 313, 424, 580
DpnII	GATC	5 cut(s)	84, 289, 311, 422, 578
Eam1104I	CTCTTC	3 cut(s)	219, 384, 486
EarI	CTCTTC	3 cut(s)	219, 384, 486
EciI	GGCGGA	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	378
Eco53kI	GAGCTC	1 cut(s)	376
Eco57I	CTGAAG	3 cut(s)	44, 548, 554
Eco72I	CACGTG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	150
Esp3I	CGTCTC	2 cut(s)	464, 506
FaiI	YATR	4 cut(s)	219, 273, 506, 604
FauI	CCCGC	1 cut(s)	110
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	50, 178, 522, 562
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	4 cut(s)	50, 178, 522, 562
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	2 cut(s)	298, 304
GluI	GCNGC	4 cut(s)	50, 178, 522, 562
GsaI	CCCAGC	1 cut(s)	385
GsuI	CTGGAG	1 cut(s)	221
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	576
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	2 cut(s)	299, 305
Hin6I	GCGC	2 cut(s)	297, 303
HinP1I	GCGC	2 cut(s)	297, 303
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	1 cut(s)	576
HphI	GGTGA	1 cut(s)	370
Hpy188I	TCNGA	3 cut(s)	280, 318, 599
Hpy188III	TCNNGA	6 cut(s)	88, 200, 362, 371, 426, 469
Hpy99I	CGWCG	2 cut(s)	38, 570
HpyAV	CCTTC	3 cut(s)	7, 85, 529
HpyCH4IV	ACGT	2 cut(s)	59, 97
HpyCH4V	TGCA	3 cut(s)	217, 404, 521
HpyF10VI	GCNNNNNNNGC	6 cut(s)	49, 109, 202, 382, 538, 547
HpyF3I	CTNAG	2 cut(s)	44, 557
HpySE526I	ACGT	2 cut(s)	59, 97
HspAI	GCGC	2 cut(s)	297, 303
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	5 cut(s)	84, 289, 311, 422, 578
LmnI	GCTCC	2 cut(s)	202, 538
LpnPI	CCDG	8 cut(s)	31, 185, 224, 237, 285, 384, 395, 589
Lsp1109I	GCAGC	2 cut(s)	533, 548
LweI	GCATC	2 cut(s)	204, 391
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	2 cut(s)	59, 97
MaeIII	GTNAC	2 cut(s)	55, 206
MalI	GATC	5 cut(s)	86, 291, 313, 424, 580
MboI	GATC	5 cut(s)	84, 289, 311, 422, 578
MboII	GAAGA	4 cut(s)	133, 236, 401, 503
MhlI	GDGCHC	3 cut(s)	114, 378, 591
MluCI	AATT	3 cut(s)	231, 274, 395
MnlI	CCTC	8 cut(s)	118, 143, 150, 220, 334, 385, 563, 605
Mph1103I	ATGCAT	1 cut(s)	219
MseI	TTAA	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	439, 484
MspI	CCGG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	253
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	6 cut(s)	49, 109, 202, 382, 538, 547
NdeII	GATC	5 cut(s)	84, 289, 311, 422, 578
NlaIV	GGNNCC	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	219
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	4 cut(s)	51, 179, 523, 563
PmaCI	CACGTG	1 cut(s)	98
PmlI	CACGTG	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	378
PspCI	CACGTG	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	574
PspPI	GGNCC	1 cut(s)	130
PvuII	CAGCTG	2 cut(s)	439, 484
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	4 cut(s)	50, 178, 522, 562
Sau3AI	GATC	5 cut(s)	84, 289, 311, 422, 578
Sau96I	GGNCC	1 cut(s)	130
SduI	GDGCHC	3 cut(s)	114, 378, 591
SfaNI	GCATC	2 cut(s)	204, 391
SfcI	CTRYAG	1 cut(s)	172
Sse9I	AATT	3 cut(s)	231, 274, 395
SsiI	CCGC	7 cut(s)	49, 70, 78, 117, 147, 177, 295
SspMI	CTAG	1 cut(s)	362
SstI	GAGCTC	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	150
TaiI	ACGT	2 cut(s)	62, 100
TaqI	TCGA	3 cut(s)	33, 425, 468
TasI	AATT	3 cut(s)	231, 274, 395
TauI	GCSGC	2 cut(s)	52, 180
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	521, 561
Tsp45I	GTSAC	1 cut(s)	55
TspGWI	ACGGA	2 cut(s)	97, 488
TspRI	CASTG	1 cut(s)	531
XbaI	TCTAGA	1 cut(s)	361
XspI	CTAG	1 cut(s)	362
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.