RchiOBHm_Chr2g0175841

Truncated transcription factor CAULIFLOWER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001081
Physical Location & Seq
Reverse (-)
87827239 .. 87830484
3246 bp
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UTR
Exon/CDS
Intron
PRQ54288

Sequence Viewer

Length: 363 bp
ATGATTCAAAGTGAACTAGAAGCACAGAACATTGAAAATCTGGATGTGACAGAGCTCACTCAACTTGAGAAGCAACTGGATGCTATATTAAGACAAACAAGATCAAGAAAGATGCAGCTCATGATGGAAACAATAACAGCTCTCATTGAGAAGGGAAAGAAGCTGGGAGAAGAGAAGGATCTCATGGAAAAGGAGATTGCAGCACTGATGGTGGAGAAGGCGAACCAGCAGGAACAGCCAACTGCGATTGCTGCTGCTAATGATAATCACGTTGATGAGGAAATGGAAGGAGAACGAGAAGGAGAAGCAGATGAGCGCAGCAGTTGTGCCCACACCAAACATCCCGTGCTTAATTTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

120

Amino Acids

13.63

Weight (kDa)

4.64

Isoelectric Point (pI)

55.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 8 - 66 1.5e-10 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 186
AgsI TTSAA 2 cut(s) 8, 35
AluBI AGCT 4 cut(s) 55, 118, 140, 163
AluI AGCT 4 cut(s) 55, 118, 140, 163
Alw21I GWGCWC 1 cut(s) 57
AlwI GGATC 1 cut(s) 186
ApeKI GCWGC 5 cut(s) 115, 200, 251, 254, 318
AspLEI GCGC 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 5 cut(s) 127, 212, 238, 241, 330
BccI CCATC 2 cut(s) 118, 202
BfaI CTAG 1 cut(s) 17
BisI GCNGC 5 cut(s) 116, 201, 252, 255, 319
BlsI GCNGC 5 cut(s) 117, 202, 253, 256, 320
BmsI GCATC 2 cut(s) 70, 102
BpuEI CTTGAG 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 81
BseGI GGATG 3 cut(s) 49, 85, 340
BseNI ACTGG 1 cut(s) 81
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 5 cut(s) 127, 212, 238, 241, 330
BseYI CCCAGC 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 57, 331
Bsp143I GATC 2 cut(s) 101, 178
BspHI TCATGA 1 cut(s) 120
BspPI GGATC 1 cut(s) 186
BsrI ACTGG 1 cut(s) 81
BssMI GATC 2 cut(s) 101, 178
Bst6I CTCTTC 1 cut(s) 165
BstF5I GGATG 3 cut(s) 49, 85, 340
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 2 cut(s) 104, 181
BstMBI GATC 2 cut(s) 101, 178
BstMWI GCNNNNNNNGC 2 cut(s) 235, 251
BstSLI GKGCMC 1 cut(s) 331
BstV1I GCAGC 5 cut(s) 127, 212, 238, 241, 330
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BtsCI GGATG 3 cut(s) 49, 85, 340
BtsIMutI CAGTG 1 cut(s) 203
CciI TCATGA 1 cut(s) 120
CfoI GCGC 1 cut(s) 318
CviAII CATG 2 cut(s) 121, 184
CviJI RGCY 5 cut(s) 55, 118, 140, 163, 238
CviKI_1 RGCY 5 cut(s) 55, 118, 140, 163, 238
DpnI GATC 2 cut(s) 103, 180
DpnII GATC 2 cut(s) 101, 178
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 2 cut(s) 124, 187
FaiI YATR 3 cut(s) 86, 122, 185
FatI CATG 2 cut(s) 120, 183
Fnu4HI GCNGC 5 cut(s) 116, 201, 252, 255, 319
FokI GGATG 3 cut(s) 56, 92, 327
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 5 cut(s) 116, 201, 252, 255, 319
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 317
GluI GCNGC 5 cut(s) 116, 201, 252, 255, 319
GsaI CCCAGC 1 cut(s) 167
HhaI GCGC 1 cut(s) 318
Hin1II CATG 2 cut(s) 124, 187
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 14
Hpy188III TCNNGA 3 cut(s) 41, 105, 121
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 5 cut(s) 145, 169, 211, 281, 293
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 115, 200
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 251
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 2 cut(s) 124, 187
HspAI GCGC 1 cut(s) 316
Kzo9I GATC 2 cut(s) 101, 178
LpnPI CCDG 5 cut(s) 26, 62, 149, 215, 239
Lsp1109I GCAGC 5 cut(s) 127, 212, 238, 241, 330
LweI GCATC 2 cut(s) 70, 102
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 46
MalI GATC 2 cut(s) 103, 180
MboI GATC 2 cut(s) 101, 178
MboII GAAGA 1 cut(s) 182
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 2 cut(s) 57, 331
MluCI AATT 1 cut(s) 352
MnlI CCTC 1 cut(s) 271
MseI TTAA 2 cut(s) 89, 351
MslI CAYNNNNRTG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 235, 251
NdeII GATC 2 cut(s) 101, 178
NlaIII CATG 2 cut(s) 124, 187
NmuCI GTSAC 1 cut(s) 46
PagI TCATGA 1 cut(s) 120
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 5 cut(s) 117, 202, 253, 256, 320
Psp124BI GAGCTC 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 2 cut(s) 89, 351
SatI GCNGC 5 cut(s) 116, 201, 252, 255, 319
Sau3AI GATC 2 cut(s) 101, 178
SduI GDGCHC 2 cut(s) 57, 331
SetI ASST 5 cut(s) 57, 120, 142, 165, 273
SfaNI GCATC 2 cut(s) 70, 102
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 1 cut(s) 352
SspMI CTAG 1 cut(s) 17
SstI GAGCTC 1 cut(s) 57
TaiI ACGT 1 cut(s) 273
TasI AATT 1 cut(s) 352
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 89, 351
Tru9I TTAA 2 cut(s) 89, 351
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 5 cut(s) 115, 200, 251, 254, 318
Tsp45I GTSAC 1 cut(s) 46
TspRI CASTG 1 cut(s) 210
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.