Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Reverse (-)

8956093 .. 8956404

Gene Structure 312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1086100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGGCGAGGGAAGGTAGAGCTGAAGCTAATCGACAACAAGCTCAGGCGTCAAGTGATGTTTTCCAAGCGGAGAAGCGAGCTGATCAAAAAGGCACATAAGCTGTCCGTGCTCGGCGGGGTGGAACTGGGCCTCGTCATCTTATCCGCCAAGGAGAGGCTCTACAAGTTCTGTAGCGGCGAGAGTGAAATGTTTGGAATGTTGATCCGTTTCGACAGCGCCGATCCGTTTCGACCCCACTGCCCGAGTCGACTCAGCAATCCCTGTTCTCCGCCGTCAGATCTCAACCGAGTCATATTCTCCGAGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

104

Amino Acids

11.7

Weight (kDa)

9.87

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	11 - 57	2.4e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	250
AciI	CCGC	5 cut(s)	70, 117, 147, 177, 272
AclWI	GGATC	2 cut(s)	199, 218
AcuI	CTGAAG	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	156
AluBI	AGCT	5 cut(s)	22, 28, 43, 82, 103
AluI	AGCT	5 cut(s)	22, 28, 43, 82, 103
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	2 cut(s)	199, 218
Ama87I	CYCGRG	1 cut(s)	244
AoxI	GGCC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	114
BceAI	ACGGC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	222, 256
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	222
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	130
BmrI	ACTGGG	1 cut(s)	137
BmuI	ACTGGG	1 cut(s)	137
Bpu10I	CCTNAGC	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	49
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse1I	ACTGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMII	CTCAG	2 cut(s)	58, 268
BseNI	ACTGG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	132
Bso31I	GGTCTC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	84, 204, 223, 280
BspACI	CCGC	5 cut(s)	70, 117, 147, 177, 272
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	2 cut(s)	57, 267
BspPI	GGATC	2 cut(s)	199, 218
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	4 cut(s)	84, 204, 223, 280
BssNI	GRCGYC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	44, 254
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	4 cut(s)	87, 207, 226, 283
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	4 cut(s)	84, 204, 223, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	80
CfoI	GCGC	1 cut(s)	221
Cfr13I	GGNCC	1 cut(s)	130
CseI	GACGC	1 cut(s)	38
CviJI	RGCY	7 cut(s)	22, 28, 43, 82, 103, 132, 160
CviKI_1	RGCY	7 cut(s)	22, 28, 43, 82, 103, 132, 160
DdeI	CTNAG	2 cut(s)	44, 254
DpnI	GATC	4 cut(s)	86, 206, 225, 282
DpnII	GATC	4 cut(s)	84, 204, 223, 280
EciI	GGCGGA	2 cut(s)	136, 261
Eco130I	CCWWGG	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaiI	YATR	2 cut(s)	99, 296
FauI	CCCGC	1 cut(s)	110
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	178
Fsp4HI	GCNGC	1 cut(s)	178
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	1 cut(s)	178
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	132
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HincII	GTYRAC	1 cut(s)	251
HindII	GTYRAC	1 cut(s)	251
HinfI	GANTC	3 cut(s)	247, 252, 291
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	2 cut(s)	280, 304
Hpy8I	GTNNAC	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	2 cut(s)	44, 254
Hsp92I	GRCGYC	1 cut(s)	49
HspAI	GCGC	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	84, 204, 223, 280
LpnPI	CCDG	3 cut(s)	31, 113, 277
MalI	GATC	4 cut(s)	86, 206, 225, 282
MboI	GATC	4 cut(s)	84, 204, 223, 280
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	114
MlyI	GAGTC	3 cut(s)	246, 256, 300
MnlI	CCTC	2 cut(s)	143, 150
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	4 cut(s)	84, 204, 223, 280
NmeAIII	GCCGAG	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PkrI	GCNGC	1 cut(s)	179
PleI	GAGTC	3 cut(s)	246, 255, 299
PpsI	GAGTC	3 cut(s)	246, 255, 299
PspPI	GGNCC	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	280
SalI	GTCGAC	1 cut(s)	249
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	4 cut(s)	84, 204, 223, 280
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	3 cut(s)	246, 256, 300
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	7 cut(s)	18, 24, 30, 45, 84, 105, 311
SfcI	CTRYAG	1 cut(s)	172
SsiI	CCGC	5 cut(s)	70, 117, 147, 177, 272
StyI	CCWWGG	1 cut(s)	150
TaqI	TCGA	4 cut(s)	33, 213, 232, 250
TauI	GCSGC	1 cut(s)	180
TscAI	CASTG	1 cut(s)	245
TspGWI	ACGGA	3 cut(s)	97, 197, 216
TspRI	CASTG	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.