Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Reverse (-)

39332824 .. 39343351

Gene Structure 10528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g53741.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGGAAGAGGGAAGGTGCAACTGAAGCGAATCGAGGATAAGATCAGGCGCCAAGTGACTTTCTCAAAGCGAAGGAGTGGGCTGATGAAGAAGGCTCGCGAGCTCTCTGTGCTCTGCGGCGTCGAGGTTGGGCTCATCATCTTCTCCGCCAAAGGGAGGCTGTACGAGTTCTGTAGCGGCGATAGTTTAGGGAATGTTCTCGAGCGTTACCAAATACATACTGAGGAGGAAATAGCTGTTCCCAAGAATTCCAAGAAACAAAATTTGGAATTGACTGGTAATGGCACATGCGCTAAGAAATCCCTGAAAATGATTCAAAGTGAACTAGAGGCACAGAACATTGAAAATCTGGATGTGACAGAGCTCACTCAACTTGAGAAGCAACTGGATGGAGCATTAAGACAAGCAAGATCAAGAAAGTCGCATCTCATGATTGAAACCATATCAACTCTCATTGAGAAGGGAAAGAAGCTGGGAGAAGAGAAGGAACTCATGGAAAAGCAGATTGCAGCACTGATGGCTGAGCAGGCGAACCAGCAGGAAGAGGCAGCTATTGCTGCTGCTAATGACAATGGTGATGAAGATGAGGATATGGAAGGAGAAGCAGATGAGCAGAGCAGTCGTGGCAACAGCAAACATCCAGTGCTTAATTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

220

Amino Acids

24.5

Weight (kDa)

5.82

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.2e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	114 - 181	3.9e-10	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	48
AccII	CGCG	1 cut(s)	99
AciI	CCGC	3 cut(s)	117, 147, 177
AcsI	RAATTY	2 cut(s)	247, 262
AcuI	CTGAAG	1 cut(s)	44
AcyI	GRCGYC	2 cut(s)	49, 120
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	153, 156
AgsI	TTSAA	3 cut(s)	317, 344, 437
AjuI	GAANNNNNNNTTGG	2 cut(s)	248, 280
AluBI	AGCT	5 cut(s)	103, 236, 364, 472, 551
AluI	AGCT	5 cut(s)	103, 236, 364, 472, 551
Alw21I	GWGCWC	3 cut(s)	105, 114, 366
Ama87I	CYCGRG	1 cut(s)	200
ApeKI	GCWGC	4 cut(s)	509, 548, 557, 560
ApoI	RAATTY	2 cut(s)	247, 262
AspLEI	GCGC	2 cut(s)	51, 293
AsuHPI	GGTGA	1 cut(s)	587
AvaI	CYCGRG	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	48
BanII	GRGCYC	3 cut(s)	105, 135, 366
Bbv12I	GWGCWC	3 cut(s)	105, 114, 366
BbvI	GCAGC	4 cut(s)	521, 544, 547, 560
BccI	CCATC	2 cut(s)	383, 511
BcgI	CGANNNNNNTGC	2 cut(s)	602, 636
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	1 cut(s)	52
BisI	GCNGC	6 cut(s)	118, 178, 510, 549, 558, 561
BlpI	GCTNAGC	1 cut(s)	522
BlsI	GCNGC	6 cut(s)	119, 179, 511, 550, 559, 562
BmeT110I	CYCGRG	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	50
BmsI	GCATC	1 cut(s)	433
Bpu1102I	GCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	395
BsaHI	GRCGYC	2 cut(s)	49, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 156
Bse1I	ACTGG	3 cut(s)	280, 390, 641
BseGI	GGATG	3 cut(s)	358, 394, 637
BseLI	CCNNNNNNNGG	2 cut(s)	153, 156
BseMII	CTCAG	2 cut(s)	213, 513
BseNI	ACTGG	3 cut(s)	280, 390, 641
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	4 cut(s)	521, 544, 547, 560
BseYI	CCCAGC	1 cut(s)	472
Bsh1236I	CGCG	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	48
BsiHKAI	GWGCWC	3 cut(s)	105, 114, 366
BsiHKCI	CYCGRG	1 cut(s)	200
BslI	CCNNNNNNNGG	2 cut(s)	153, 156
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	4 cut(s)	105, 114, 135, 366
Bsp143I	GATC	2 cut(s)	42, 410
Bsp1720I	GCTNAGC	1 cut(s)	522
Bsp68I	TCGCGA	1 cut(s)	99
BspACI	CCGC	3 cut(s)	117, 147, 177
BspCNI	CTCAG	2 cut(s)	214, 514
BspFNI	CGCG	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	48
BsrI	ACTGG	3 cut(s)	280, 390, 641
BssMI	GATC	2 cut(s)	42, 410
BssNI	GRCGYC	2 cut(s)	49, 120
Bst6I	CTCTTC	2 cut(s)	474, 537
BstACI	GRCGYC	2 cut(s)	49, 120
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	3 cut(s)	97, 101, 528
BstDEI	CTNAG	3 cut(s)	222, 294, 522
BstF5I	GGATG	3 cut(s)	358, 394, 637
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	52
BstHHI	GCGC	2 cut(s)	51, 293
BstKTI	GATC	2 cut(s)	45, 413
BstMBI	GATC	2 cut(s)	42, 410
BstMWI	GCNNNNNNNGC	7 cut(s)	25, 109, 518, 527, 554, 557, 624
BstNSI	RCATGY	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	4 cut(s)	521, 544, 547, 560
BtsCI	GGATG	3 cut(s)	358, 394, 637
BtsIMutI	CAGTG	2 cut(s)	512, 648
BtuMI	TCGCGA	1 cut(s)	99
Cac8I	GCNNGC	3 cut(s)	97, 101, 528
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	2 cut(s)	51, 293
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	3 cut(s)	288, 430, 493
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	3 cut(s)	222, 294, 522
DinI	GGCGCC	1 cut(s)	50
DpnI	GATC	2 cut(s)	44, 412
DpnII	GATC	2 cut(s)	42, 410
Eam1104I	CTCTTC	2 cut(s)	474, 537
EarI	CTCTTC	2 cut(s)	474, 537
EciI	GGCGGA	1 cut(s)	136
Ecl136II	GAGCTC	2 cut(s)	103, 364
Eco24I	GRGCYC	3 cut(s)	105, 135, 366
Eco53kI	GAGCTC	2 cut(s)	103, 364
Eco57I	CTGAAG	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	200
EcoICRI	GAGCTC	2 cut(s)	103, 364
EcoRI	GAATTC	1 cut(s)	247
EcoT38I	GRGCYC	3 cut(s)	105, 135, 366
EgeI	GGCGCC	1 cut(s)	50
EheI	GGCGCC	1 cut(s)	50
FaeI	CATG	3 cut(s)	291, 433, 496
FaiI	YATR	6 cut(s)	219, 289, 431, 443, 494, 593
FatI	CATG	3 cut(s)	287, 429, 492
Fnu4HI	GCNGC	6 cut(s)	118, 178, 510, 549, 558, 561
FokI	GGATG	3 cut(s)	365, 401, 624
FriOI	GRGCYC	3 cut(s)	105, 135, 366
Fsp4HI	GCNGC	6 cut(s)	118, 178, 510, 549, 558, 561
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	2 cut(s)	50, 292
GluI	GCNGC	6 cut(s)	118, 178, 510, 549, 558, 561
GsaI	CCCAGC	1 cut(s)	476
HaeII	RGCGCY	1 cut(s)	52
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	2 cut(s)	51, 293
Hin1I	GRCGYC	2 cut(s)	49, 120
Hin1II	CATG	3 cut(s)	291, 433, 496
Hin6I	GCGC	2 cut(s)	49, 291
HinP1I	GCGC	2 cut(s)	49, 291
HinfI	GANTC	2 cut(s)	30, 313
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188III	TCNNGA	5 cut(s)	98, 200, 350, 414, 430
Hpy8I	GTNNAC	1 cut(s)	323
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	6 cut(s)	7, 66, 85, 454, 478, 590
HpyCH4V	TGCA	2 cut(s)	19, 509
HpyF10VI	GCNNNNNNNGC	7 cut(s)	25, 109, 518, 527, 554, 557, 624
HpyF3I	CTNAG	3 cut(s)	222, 294, 522
Hsp92I	GRCGYC	2 cut(s)	49, 120
Hsp92II	CATG	3 cut(s)	291, 433, 496
HspAI	GCGC	2 cut(s)	49, 291
KasI	GGCGCC	1 cut(s)	48
Kzo9I	GATC	2 cut(s)	42, 410
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	4 cut(s)	521, 544, 547, 560
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	1 cut(s)	326
MaeIII	GTNAC	3 cut(s)	55, 206, 355
MalI	GATC	2 cut(s)	44, 412
MboI	GATC	2 cut(s)	42, 410
MboII	GAAGA	6 cut(s)	18, 100, 133, 491, 554, 593
MhlI	GDGCHC	4 cut(s)	105, 114, 135, 366
MluCI	AATT	4 cut(s)	247, 262, 269, 649
Mly113I	GGCGCC	1 cut(s)	49
MnlI	CCTC	8 cut(s)	28, 118, 150, 217, 220, 322, 538, 580
MseI	TTAA	2 cut(s)	398, 648
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	7 cut(s)	25, 109, 518, 527, 554, 557, 624
NarI	GGCGCC	1 cut(s)	49
NdeII	GATC	2 cut(s)	42, 410
NlaIII	CATG	3 cut(s)	291, 433, 496
NlaIV	GGNNCC	1 cut(s)	50
NmuCI	GTSAC	2 cut(s)	55, 355
NruI	TCGCGA	1 cut(s)	99
NspI	RCATGY	1 cut(s)	291
PaeR7I	CTCGAG	1 cut(s)	200
PagI	TCATGA	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	30, 313
PkrI	GCNGC	6 cut(s)	119, 179, 511, 550, 559, 562
PluTI	GGCGCC	1 cut(s)	52
Psp124BI	GAGCTC	2 cut(s)	105, 366
PspFI	CCCAGC	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	50
RruI	TCGCGA	1 cut(s)	99
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SacI	GAGCTC	2 cut(s)	105, 366
SaqAI	TTAA	2 cut(s)	398, 648
SatI	GCNGC	6 cut(s)	118, 178, 510, 549, 558, 561
Sau3AI	GATC	2 cut(s)	42, 410
SduI	GDGCHC	4 cut(s)	105, 114, 135, 366
SetI	ASST	7 cut(s)	18, 105, 129, 238, 366, 474, 553
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	172
SfoI	GGCGCC	1 cut(s)	50
Sfr274I	CTCGAG	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	200
SmlI	CTYRAG	2 cut(s)	200, 374
SmoI	CTYRAG	2 cut(s)	200, 374
Sse9I	AATT	4 cut(s)	247, 262, 269, 649
SsiI	CCGC	3 cut(s)	117, 147, 177
SspDI	GGCGCC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	326
SstI	GAGCTC	2 cut(s)	105, 366
TaqI	TCGA	3 cut(s)	33, 123, 201
TasI	AATT	4 cut(s)	247, 262, 269, 649
TauI	GCSGC	2 cut(s)	120, 180
TfiI	GAWTC	2 cut(s)	30, 313
Tru1I	TTAA	2 cut(s)	398, 648
Tru9I	TTAA	2 cut(s)	398, 648
TscAI	CASTG	2 cut(s)	519, 648
TseFI	GTSAC	2 cut(s)	55, 355
TseI	GCWGC	4 cut(s)	509, 548, 557, 560
Tsp45I	GTSAC	2 cut(s)	55, 355
TspDTI	ATGAA	2 cut(s)	101, 594
TspRI	CASTG	2 cut(s)	519, 648
XapI	RAATTY	2 cut(s)	247, 262
XceI	RCATGY	1 cut(s)	291
XhoI	CTCGAG	1 cut(s)	200
XspI	CTAG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.