Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001081

Physical Location & Seq

Genomic Coordinates Forward (+)

25987309 .. 25991412

Gene Structure 4104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGGAAGAAGAAAAGTCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAAGGTCTCATCGAAAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTGTTGTCGCCGTCTCCGGTTCCGGAAAACTCTACGACTCTGCCTCCGGTGACAACATGTCAAAGATCATTGATCGTTATGAAATACATCATGCTGATGAACTTAAAGCCTTAGATCTTGCAGAAAAAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTGAAGAATCAAATGTCGATAATGTAAGTGTAGATTCTCTAATATCTATGGAGGAACAGCTCGAGACTGCTCTGTCAGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGATATGAAGTCACTTCAAGAAAGGGAGAAGTTGCTGATAGAAGAGAACCAGATTCTGGCTAGCCAGGTGGGGAAGAAGACGTTTCTGGTTATAGAAGGTGACAGAGGAATGTCACGGGAAAATGGCTCCGGCAACAAAGTACCGGAGACTCTTTCGCTGCTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009909 GO:0009910 GO:0010048 GO:0010219 GO:0010221 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048573 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048587 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

196

Amino Acids

22.13

Weight (kDa)

7.79

Isoelectric Point (pI)

57.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 55	9.4e-21	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	96 - 164	4.4e-11	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT1G77080 AT5G10140 AT5G10140 AT5G10140 AT5G10140 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65050 AT5G65060 AT5G65060 AT5G65060 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65070 AT5G65080 AT5G65080 AT5G65080
fragaria_vesca	FvH4_6g53741 FvH4_6g53741
malus_domestica	MD05G1037100.v1.1 MD07G1086100.v1.1 MD09G1009100.v1.1 MD10G1041100.v1.1 MD17G1001300.v1.1
prunus_persica	Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1 Prupe.3G307800_v2.0.a1
pyrus_communis	pycom05g02750 pycom17g00780 pycom17g00790
rosa_chinensis	RchiOBHm_Chr2g0175841 RchiOBHm_Chr2g0175851
rosa_laevigata	RLG00000022359
rosa_multiflora	Rmu_sc0000998.1_g000001 Rmu_sc0003558.1_g000005 Rmu_sc0003558.1_g000006
rosa_roxburghii	Rroxscaffold_2G00077000
rosa_rugosa	Rorug02G0588000 Rorug02G0588100
rosa_samantha	Rh2AG667000 Rh2BG678500 Rh2CG641500 Rh2DG692200
rosa_wichuraiana	Rw2G054700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	78, 382
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	49
AccIII	TCCGGA	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	258
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	1 cut(s)	478
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	3 cut(s)	108, 314, 440
AhdI	GACNNNNNGTC	1 cut(s)	187
AjnI	CCWGG	1 cut(s)	486
AluBI	AGCT	4 cut(s)	95, 310, 370, 398
AluI	AGCT	4 cut(s)	95, 310, 370, 398
Alw26I	GTCTC	4 cut(s)	86, 148, 368, 563
AlwNI	CAGNNNCTG	1 cut(s)	478
Ama87I	CYCGRG	1 cut(s)	371
Aor13HI	TCCGGA	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	580
ApoI	RAATTY	1 cut(s)	258
Asp700I	GAANNNNTTC	1 cut(s)	258
AsuHPI	GGTGA	2 cut(s)	191, 533
AsuNHI	GCTAGC	1 cut(s)	482
AvaI	CYCGRG	1 cut(s)	371
BbsI	GAAGAC	2 cut(s)	410, 506
BbvI	GCAGC	1 cut(s)	567
BccI	CCATC	2 cut(s)	134, 412
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	488
BcoDI	GTCTC	4 cut(s)	86, 148, 368, 563
BfaI	CTAG	2 cut(s)	290, 483
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	1 cut(s)	581
BlsI	GCNGC	1 cut(s)	582
Bme1390I	CCNGG	1 cut(s)	488
BmeRI	GACNNNNNGTC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	151, 550
BmrFI	CCNGG	1 cut(s)	488
BmtI	GCTAGC	1 cut(s)	486
BpiI	GAAGAC	2 cut(s)	410, 506
BpuEI	CTTGAG	1 cut(s)	569
BsaI	GGTCTC	1 cut(s)	86
BsaWI	WCCGGW	4 cut(s)	146, 152, 176, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	478
BseAI	TCCGGA	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	488
BseLI	CCNNNNNNNGG	1 cut(s)	478
BseXI	GCAGC	1 cut(s)	567
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	5 cut(s)	147, 153, 177, 552, 566
BslI	CCNNNNNNNGG	1 cut(s)	478
BsmAI	GTCTC	4 cut(s)	86, 148, 368, 563
BsmBI	CGTCTC	1 cut(s)	148
Bso31I	GGTCTC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	371
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	4 cut(s)	21, 195, 202, 244
BspEI	TCCGGA	1 cut(s)	152
BspLI	GGNNCC	2 cut(s)	151, 550
BspOI	GCTAGC	1 cut(s)	486
BspTNI	GGTCTC	1 cut(s)	86
BssMI	GATC	4 cut(s)	21, 195, 202, 244
Bst2UI	CCWGG	1 cut(s)	488
Bst6I	CTCTTC	1 cut(s)	459
BstC8I	GCNNGC	2 cut(s)	308, 484
BstDEI	CTNAG	2 cut(s)	241, 399
BstKTI	GATC	4 cut(s)	24, 198, 205, 247
BstMAI	GTCTC	4 cut(s)	86, 148, 368, 563
BstMBI	GATC	4 cut(s)	21, 195, 202, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	488
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	567
BstV2I	GAAGAC	2 cut(s)	410, 506
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BtgZI	GCGATG	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	308, 484
CaiI	CAGNNNCTG	1 cut(s)	478
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	2 cut(s)	187, 221
CviJI	RGCY	8 cut(s)	95, 239, 310, 370, 398, 482, 486, 549
CviKI_1	RGCY	8 cut(s)	95, 239, 310, 370, 398, 482, 486, 549
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	2 cut(s)	241, 399
DpnI	GATC	4 cut(s)	23, 197, 204, 246
DpnII	GATC	4 cut(s)	21, 195, 202, 244
DrdI	GACNNNNNNGTC	2 cut(s)	78, 382
DriI	GACNNNNNGTC	1 cut(s)	187
DseDI	GACNNNNNNGTC	2 cut(s)	78, 382
Eam1104I	CTCTTC	1 cut(s)	459
Eam1105I	GACNNNNNGTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	486
Esp3I	CGTCTC	1 cut(s)	148
FaeI	CATG	2 cut(s)	190, 224
FaiI	YATR	6 cut(s)	188, 210, 222, 359, 428, 515
FatI	CATG	2 cut(s)	186, 220
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	1 cut(s)	581
Fsp4HI	GCNGC	1 cut(s)	581
FspBI	CTAG	2 cut(s)	290, 483
GluI	GCNGC	1 cut(s)	581
HapII	CCGG	5 cut(s)	147, 153, 177, 552, 566
HgaI	GACGC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	190, 224
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	7 cut(s)	30, 119, 167, 317, 344, 475, 571
HpaII	CCGG	5 cut(s)	147, 153, 177, 552, 566
HphI	GGTGA	2 cut(s)	191, 533
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	5 cut(s)	19, 34, 153, 373, 440
Hpy8I	GTNNAC	1 cut(s)	50
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	512
HpyCH4IV	ACGT	1 cut(s)	503
HpyCH4V	TGCA	1 cut(s)	251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	241, 399
HpySE526I	ACGT	1 cut(s)	503
Hsp92II	CATG	2 cut(s)	190, 224
Kpn2I	TCCGGA	1 cut(s)	152
Kzo9I	GATC	4 cut(s)	21, 195, 202, 244
LmnI	GCTCC	1 cut(s)	554
Lsp1109I	GCAGC	1 cut(s)	567
MaeI	CTAG	2 cut(s)	290, 483
MaeII	ACGT	1 cut(s)	503
MaeIII	GTNAC	6 cut(s)	55, 179, 285, 432, 521, 534
MalI	GATC	4 cut(s)	23, 197, 204, 246
MboI	GATC	4 cut(s)	21, 195, 202, 244
MboII	GAAGA	9 cut(s)	18, 21, 114, 263, 326, 415, 476, 508, 511
MflI	RGATCY	1 cut(s)	244
MluCI	AATT	4 cut(s)	108, 258, 265, 390
MlyI	GAGTC	2 cut(s)	161, 565
MnlI	CCTC	4 cut(s)	184, 355, 415, 521
MroI	TCCGGA	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	5 cut(s)	147, 153, 177, 552, 566
MspR9I	CCNGG	1 cut(s)	488
MvaI	CCWGG	1 cut(s)	488
MwoI	GCNNNNNNNGC	1 cut(s)	137
NdeII	GATC	4 cut(s)	21, 195, 202, 244
NheI	GCTAGC	1 cut(s)	482
NlaIII	CATG	2 cut(s)	190, 224
NlaIV	GGNNCC	2 cut(s)	151, 550
NmuCI	GTSAC	5 cut(s)	55, 179, 432, 521, 534
NspI	RCATGY	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	371
PciI	ACATGT	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	5 cut(s)	30, 119, 317, 344, 475
PflMI	CCANNNNNTGG	1 cut(s)	478
PkrI	GCNGC	1 cut(s)	582
PleI	GAGTC	2 cut(s)	161, 565
PpsI	GAGTC	2 cut(s)	161, 565
PscI	ACATGT	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	486
PspN4I	GGNNCC	2 cut(s)	151, 550
PstNI	CAGNNNCTG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
RseI	CAYNNNNRTG	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	1 cut(s)	581
Sau3AI	GATC	4 cut(s)	21, 195, 202, 244
SchI	GAGTC	2 cut(s)	161, 565
ScrFI	CCNGG	1 cut(s)	488
SetI	ASST	8 cut(s)	82, 97, 312, 372, 400, 492, 506, 523
Sfr274I	CTCGAG	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	2 cut(s)	371, 584
SmoI	CTYRAG	2 cut(s)	371, 584
Sse9I	AATT	4 cut(s)	108, 258, 265, 390
SspMI	CTAG	2 cut(s)	290, 483
StyD4I	CCNGG	1 cut(s)	486
TaiI	ACGT	1 cut(s)	506
TaqI	TCGA	7 cut(s)	18, 33, 49, 87, 97, 327, 372
TasI	AATT	4 cut(s)	108, 258, 265, 390
TfiI	GAWTC	5 cut(s)	30, 119, 317, 344, 475
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseFI	GTSAC	5 cut(s)	55, 179, 432, 521, 534
TseI	GCWGC	1 cut(s)	580
Tsp45I	GTSAC	5 cut(s)	55, 179, 432, 521, 534
TspDTI	ATGAA	3 cut(s)	225, 243, 443
Van91I	CCANNNNNTGG	1 cut(s)	478
XapI	RAATTY	1 cut(s)	258
XceI	RCATGY	1 cut(s)	190
XhoI	CTCGAG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	2 cut(s)	290, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.