Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000848

Physical Location & Seq

Genomic Coordinates Reverse (-)

8519485 .. 8521275

Gene Structure 1791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCGTGGCAAGCATACGTTGATGAGCATTTGATGTGTGATGTCGGCGACGGCCAAGGTCACCACCTTACCGCCGCCGCTATCATCGGCCATGATGGTAGCGTTTGGGCTCAGAGCGCTAATTTTCCTCAGTTCAAACCTCAAGAGATCACAGACATTATGAAGGATTTCGATGAGCCTGGTCACCTCGCTCCCACGGGTATGTTCCTCGCAGGGCTAAAGTATATGGTCATCCAAGGCGAGCCTAATGCTGTCATCCGTGGCAAGAAGGGAGCTGGGGGAATCACGATCAAGAAAACAGGACAATCAATGGTGTTTGGTCTGTACGAAGAGCCAGTGACTCCAGGACAATGCAACATGGTTGTCGAGAGGTTGGGTGATTACTTGATCGAACAGGGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005938 GO:0006996 GO:0007010 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0042989 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0065007 GO:0065008 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0099568 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

134

Amino Acids

14.55

Weight (kDa)

5.02

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	1 - 134	1.5e-44	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19770 AT4G29340
fragaria_vesca	FvH4_1g06470 FvH4_2g26231 FvH4_2g35200 FvH4_6g32550
malus_domestica	MD02G1068000.v1.1 MD08G1109600.v1.1 MD09G1201100.v1.1 MD09G1201400.v1.1 MD15G1089500.v1.1 MD15G1199600.v1.1
prunus_persica	Prupe.1G444100_v2.0.a1 Prupe.1G444100_v2.0.a1 Prupe.1G444100_v2.0.a1 Prupe.1G504400_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.7G217600_v2.0.a1 Prupe.7G217600_v2.0.a1
pyrus_communis	pycom02g05380 pycom09g11810 pycom15g08390 pycom15g17710
rosa_chinensis	RchiOBHm_Chr1g0361111 RchiOBHm_Chr2g0092221 RchiOBHm_Chr2g0140921 RchiOBHm_Chr6g0294811 RchiOBHm_Chr6g0306741
rosa_laevigata	RLG00000010769 RLG00000011838 RLG00000016287 RLG00000019902
rosa_multiflora	Rmu_co8510555.1_g000001 Rmu_sc0000524.1_g000025 Rmu_sc0001331.1_g000001 Rmu_sc0003848.1_g000011 Rmu_sc0017785.1_g000002 Rmu_sc0017786.1_g000002
rosa_roxburghii	Rroxscaffold_2G00104380 Rroxscaffold_2G00149360 Rroxscaffold_7G00161500 Rroxscaffold_7G00172990
rosa_rugosa	Rorug01G0285600 Rorug02G0023800 Rorug02G0365700 Rorug06G0247000 Rorug06G0352300
rosa_samantha	Rh2AG069500 Rh2AG069600 Rh2AG417100 Rh2BG069100 Rh2BG427000 Rh2CG070200 Rh2CG070300 Rh2CG403400 Rh6AG360600 Rh6AG464400 Rh6CG374300 Rh6CG478700 Rh6DG360800 Rh6DG465800
rosa_wichuraiana	Rw2G006260 Rw2G034130 Rw6G031460 Rw6G040470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	72, 75, 78
AcoI	YGGCCR	2 cut(s)	52, 88
AfaI	GTAC	1 cut(s)	326
AfeI	AGCGCT	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	178, 343
AluBI	AGCT	1 cut(s)	275
AluI	AGCT	1 cut(s)	275
Aor51HI	AGCGCT	1 cut(s)	118
AoxI	GGCC	2 cut(s)	52, 88
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	119
AsuHPI	GGTGA	3 cut(s)	53, 176, 389
BanII	GRGCYC	1 cut(s)	112
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	67
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	2 cut(s)	180, 345
BfoI	RGCGCY	1 cut(s)	120
BisI	GCNGC	2 cut(s)	75, 78
BlsI	GCNGC	2 cut(s)	76, 79
Bme1390I	CCNGG	2 cut(s)	180, 345
BmrFI	CCNGG	2 cut(s)	180, 345
BpmI	CTGGAG	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	126
BsaJI	CCNNGG	4 cut(s)	55, 195, 235, 259
Bse1I	ACTGG	1 cut(s)	335
BseBI	CCWGG	2 cut(s)	180, 345
BseDI	CCNNGG	4 cut(s)	55, 195, 235, 259
BseGI	GGATG	2 cut(s)	231, 255
BseMII	CTCAG	2 cut(s)	125, 143
BseNI	ACTGG	1 cut(s)	335
BseYI	CCCAGC	1 cut(s)	275
BshFI	GGCC	2 cut(s)	54, 90
BsnI	GGCC	2 cut(s)	54, 90
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	147, 288, 387
BspACI	CCGC	3 cut(s)	72, 75, 78
BspANI	GGCC	2 cut(s)	54, 90
BspCNI	CTCAG	2 cut(s)	124, 142
BspQI	GCTCTTC	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	335
BssECI	CCNNGG	4 cut(s)	55, 195, 235, 259
BssMI	GATC	3 cut(s)	147, 288, 387
BssT1I	CCWWGG	2 cut(s)	55, 235
Bst2UI	CCWGG	2 cut(s)	180, 345
Bst6I	CTCTTC	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	12, 242
BstDEI	CTNAG	2 cut(s)	111, 129
BstDSI	CCRYGG	2 cut(s)	195, 259
BstEII	GGTNACC	2 cut(s)	59, 182
BstF5I	GGATG	2 cut(s)	231, 255
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	3 cut(s)	150, 291, 390
BstMBI	GATC	3 cut(s)	147, 288, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	2 cut(s)	180, 345
BstPI	GGTNACC	2 cut(s)	59, 182
BstSCI	CCNGG	2 cut(s)	178, 343
BsuRI	GGCC	2 cut(s)	54, 90
BtgI	CCRYGG	2 cut(s)	195, 259
BtsCI	GGATG	2 cut(s)	231, 255
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	2 cut(s)	12, 242
CfoI	GCGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	2 cut(s)	92, 358
CviJI	RGCY	8 cut(s)	54, 90, 110, 178, 217, 244, 275, 334
CviKI_1	RGCY	8 cut(s)	54, 90, 110, 178, 217, 244, 275, 334
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	111, 129
DpnI	GATC	3 cut(s)	149, 290, 389
DpnII	GATC	3 cut(s)	147, 288, 387
EaeI	YGGCCR	2 cut(s)	52, 88
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	55, 235
Eco24I	GRGCYC	1 cut(s)	112
Eco47III	AGCGCT	1 cut(s)	118
Eco91I	GGTNACC	2 cut(s)	59, 182
EcoO65I	GGTNACC	2 cut(s)	59, 182
EcoRII	CCWGG	2 cut(s)	178, 343
EcoT14I	CCWWGG	2 cut(s)	55, 235
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	2 cut(s)	55, 235
FaeI	CATG	2 cut(s)	95, 361
FaiI	YATR	7 cut(s)	16, 93, 161, 203, 225, 227, 359
FatI	CATG	2 cut(s)	91, 357
Fnu4HI	GCNGC	2 cut(s)	75, 78
FokI	GGATG	2 cut(s)	218, 242
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	2 cut(s)	75, 78
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	2 cut(s)	75, 78
GsaI	CCCAGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	327
HaeII	RGCGCY	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	54, 90
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	2 cut(s)	95, 361
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	282, 340
HphI	GGTGA	3 cut(s)	53, 176, 389
Hpy188I	TCNGA	1 cut(s)	114
Hpy188III	TCNNGA	4 cut(s)	143, 286, 292, 367
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	157, 262
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	1 cut(s)	354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	2 cut(s)	111, 129
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	95, 361
HspAI	GCGC	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	147, 288, 387
LguI	GCTCTTC	1 cut(s)	324
LmnI	GCTCC	2 cut(s)	196, 272
LpnPI	CCDG	9 cut(s)	165, 192, 198, 261, 285, 330, 348, 357, 380
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	59, 182, 337
MalI	GATC	3 cut(s)	149, 290, 389
MboI	GATC	3 cut(s)	147, 288, 387
MboII	GAAGA	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	1 cut(s)	121
MlyI	GAGTC	1 cut(s)	334
MnlI	CCTC	5 cut(s)	138, 150, 197, 218, 363
MroXI	GAANNNNTTC	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	180, 345
MvaI	CCWGG	2 cut(s)	180, 345
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	3 cut(s)	147, 288, 387
NlaIII	CATG	2 cut(s)	95, 361
NmuCI	GTSAC	3 cut(s)	59, 182, 337
PciSI	GCTCTTC	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	282
PfoI	TCCNGGA	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	76, 79
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Psp6I	CCWGG	2 cut(s)	178, 343
PspEI	GGTNACC	2 cut(s)	59, 182
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	2 cut(s)	178, 343
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	324
SatI	GCNGC	2 cut(s)	75, 78
Sau3AI	GATC	3 cut(s)	147, 288, 387
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	2 cut(s)	180, 345
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	7 cut(s)	21, 61, 69, 142, 189, 277, 374
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	1 cut(s)	121
SsiI	CCGC	3 cut(s)	72, 75, 78
StyD4I	CCNGG	2 cut(s)	178, 343
StyI	CCWWGG	2 cut(s)	55, 235
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	3 cut(s)	171, 366, 390
TasI	AATT	1 cut(s)	121
TauI	GCSGC	2 cut(s)	77, 80
TfiI	GAWTC	1 cut(s)	282
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	3 cut(s)	59, 182, 337
Tsp45I	GTSAC	3 cut(s)	59, 182, 337
TspDTI	ATGAA	1 cut(s)	176
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.