Rroxscaffold_7G00161500

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000848
Physical Location & Seq
Forward (+)
4231912 .. 4233951
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161500.1

Sequence Viewer

Length: 396 bp
ATGTCGTGGCAGCAGTACGTGGACGAGCACTTGATGTGCGAAATCGACGGCAACGCCCTCACGGCCGCCGCCATCCTCGGCCAAGACGGCAGCGTTTGGTCCAAGAGCGCCAACTTTCCTCAGTTTAAGCCGGAAGAGATTGCGGCCATTATGAAAGATTTTGATCAACCCGGAACGCTTGCCCCCACTGGATTATTCCTTGGAGGGACTAAGTATATGGTGATTCAAGGTGAAGCCGGAGCGGTAATTCGTGGAAAGAAGGGCTCTGGTGGAATTACTATTAAGAAGACCAGTCAGGCCTTGATCATTGGCATATATGATGAGCCTTTGACTCCTGGGCAGTGCAACATGATAGTTGAAAGGCTGGGCGATTATCTTATTGAACAGGGTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0007275 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0008154 GO:0009506 GO:0009507 GO:0009524 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009987 GO:0010229 GO:0010639 GO:0015629 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022622 GO:0030029 GO:0030036 GO:0030054 GO:0030312 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0031974 GO:0031981 GO:0032271 GO:0032272 GO:0032501 GO:0032502 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0033036 GO:0033043 GO:0034613 GO:0040007 GO:0042989 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045185 GO:0048046 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0055044 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0090567 GO:0090696 GO:0097435 GO:0099402 GO:0099568 GO:0110053 GO:1902903 GO:1902904
KEGG Pathways
Metabolic & Signaling
ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132
Pfam Domains
Protein Families
Profilin

Protein Analysis

131

Amino Acids

14.08

Weight (kDa)

4.72

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 1 - 131 1.5e-44 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 242
AciI CCGC 4 cut(s) 66, 69, 143, 242
AcoI YGGCCR 3 cut(s) 63, 79, 144
AfaI GTAC 1 cut(s) 17
AgsI TTSAA 3 cut(s) 227, 359, 383
AjnI CCWGG 1 cut(s) 334
Alw21I GWGCWC 1 cut(s) 30
AlwNI CAGNNNCTG 1 cut(s) 391
AoxI GGCC 4 cut(s) 63, 79, 144, 297
ApeKI GCWGC 2 cut(s) 10, 90
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 2 cut(s) 232, 242
AvaII GGWCC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 22, 102
BccI CCATC 1 cut(s) 80
BceAI ACGGC 3 cut(s) 64, 78, 103
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 2 cut(s) 163, 303
BcnI CCSGG 1 cut(s) 171
BfoI RGCGCY 1 cut(s) 111
BglI GCCNNNNNGGC 2 cut(s) 62, 87
BisI GCNGC 5 cut(s) 11, 66, 69, 91, 144
BlsI GCNGC 5 cut(s) 12, 67, 70, 92, 145
Bme1390I CCNGG 2 cut(s) 171, 336
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmrFI CCNGG 2 cut(s) 171, 336
BpiI GAAGAC 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 19
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 3 cut(s) 76, 199, 335
Bse1I ACTGG 2 cut(s) 193, 291
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 3 cut(s) 76, 199, 335
BseGI GGATG 1 cut(s) 72
BseJI GATNNNNATC 1 cut(s) 162
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 193, 291
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 2 cut(s) 22, 102
BseYI CCCAGC 1 cut(s) 364
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 4 cut(s) 65, 81, 146, 299
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 3 cut(s) 131, 171, 237
BslFI GGGAC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 4 cut(s) 65, 81, 146, 299
Bsp1286I GDGCHC 2 cut(s) 30, 266
Bsp143I GATC 2 cut(s) 163, 303
BspACI CCGC 4 cut(s) 66, 69, 143, 242
BspANI GGCC 4 cut(s) 65, 81, 146, 299
BspCNI CTCAG 1 cut(s) 133
BsrBI CCGCTC 1 cut(s) 242
BsrI ACTGG 2 cut(s) 193, 291
BssECI CCNNGG 3 cut(s) 76, 199, 335
BssMI GATC 2 cut(s) 163, 303
BssT1I CCWWGG 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 336
Bst6I CTCTTC 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 120, 210
BstF5I GGATG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 2 cut(s) 166, 306
BstMBI GATC 2 cut(s) 163, 303
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 2 cut(s) 62, 87
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 2 cut(s) 169, 334
BstV1I GCAGC 2 cut(s) 22, 102
BstV2I GAAGAC 1 cut(s) 293
BstZI CGGCCG 1 cut(s) 63
BsuRI GGCC 4 cut(s) 65, 81, 146, 299
BtsCI GGATG 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 347
BtsIMutI CAGTG 2 cut(s) 186, 347
Cac8I GCNNGC 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 391
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 16
CviAII CATG 1 cut(s) 349
CviJI RGCY 9 cut(s) 65, 81, 130, 146, 236, 264, 299, 325, 364
CviKI_1 RGCY 9 cut(s) 65, 81, 130, 146, 236, 264, 299, 325, 364
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 2 cut(s) 120, 210
DpnI GATC 2 cut(s) 165, 305
DpnII GATC 2 cut(s) 163, 303
EaeI YGGCCR 3 cut(s) 63, 79, 144
EagI CGGCCG 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EclXI CGGCCG 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 199
Eco147I AGGCCT 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 99
Eco52I CGGCCG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 1 cut(s) 352
FaiI YATR 7 cut(s) 152, 216, 218, 314, 316, 318, 350
FaqI GGGAC 1 cut(s) 220
FatI CATG 1 cut(s) 348
FbaI TGATCA 2 cut(s) 163, 303
Fnu4HI GCNGC 5 cut(s) 11, 66, 69, 91, 144
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 5 cut(s) 11, 66, 69, 91, 144
GlaI GCGC 1 cut(s) 109
GluI GCNGC 5 cut(s) 11, 66, 69, 91, 144
GsaI CCCAGC 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 4 cut(s) 65, 81, 146, 299
HapII CCGG 3 cut(s) 131, 171, 237
HhaI GCGC 1 cut(s) 110
Hin1II CATG 1 cut(s) 352
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HinfI GANTC 2 cut(s) 223, 331
HpaII CCGG 3 cut(s) 131, 171, 237
HphI GGTGA 2 cut(s) 232, 242
Hpy166II GTNNAC 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 253
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 87
HpyF3I CTNAG 2 cut(s) 120, 210
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 352
HspAI GCGC 1 cut(s) 108
Ksp22I TGATCA 2 cut(s) 163, 303
Kzo9I GATC 2 cut(s) 163, 303
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 2 cut(s) 22, 102
MaeII ACGT 1 cut(s) 18
MalI GATC 2 cut(s) 165, 305
MbiI CCGCTC 1 cut(s) 242
MboI GATC 2 cut(s) 163, 303
MboII GAAGA 2 cut(s) 146, 298
MhlI GDGCHC 2 cut(s) 30, 266
MluCI AATT 2 cut(s) 246, 273
MlyI GAGTC 1 cut(s) 325
MnlI CCTC 4 cut(s) 68, 86, 129, 197
MseI TTAA 2 cut(s) 126, 282
MspI CCGG 3 cut(s) 131, 171, 237
MspR9I CCNGG 2 cut(s) 171, 336
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 2 cut(s) 62, 87
NciI CCSGG 1 cut(s) 171
NdeII GATC 2 cut(s) 163, 303
NlaIII CATG 1 cut(s) 352
NmeAIII GCCGAG 1 cut(s) 57
PceI AGGCCT 1 cut(s) 299
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 5 cut(s) 12, 67, 70, 92, 145
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 1 cut(s) 334
PspPI GGNCC 1 cut(s) 99
PstNI CAGNNNCTG 1 cut(s) 391
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SaqAI TTAA 2 cut(s) 126, 282
SatI GCNGC 5 cut(s) 11, 66, 69, 91, 144
Sau3AI GATC 2 cut(s) 163, 303
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 2 cut(s) 171, 336
SduI GDGCHC 2 cut(s) 30, 266
SetI ASST 2 cut(s) 21, 232
SinI GGWCC 1 cut(s) 99
Sse9I AATT 2 cut(s) 246, 273
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 4 cut(s) 66, 69, 143, 242
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 2 cut(s) 169, 334
StyI CCWWGG 1 cut(s) 199
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 45
TasI AATT 2 cut(s) 246, 273
TauI GCSGC 3 cut(s) 68, 71, 146
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 2 cut(s) 126, 282
Tru9I TTAA 2 cut(s) 126, 282
TscAI CASTG 2 cut(s) 193, 347
TseI GCWGC 2 cut(s) 10, 90
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 2 cut(s) 193, 347
VpaK11BI GGWCC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.