Prupe.3G057200_v2.0.a1

Profilin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000848
Physical Location & Seq
Forward (+)
4050807 .. 4053716
2910 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G057200.3

Sequence Viewer

Length: 396 bp
ATGTCGTGGCAGGTTTACGTCGACGATCACTTGATGTGCGACATCGACGGCCACCATCTGGCCTCCGCGGCCATCGTCGGTCACGACGGTAGTGTGTGGGCCCAGAGTTCCGCCTTCCCTAAGTTCAAGCCCGAAGAAATTACGGCGATAATGAAAGATTTCGATGAGCCAGGGTCTCTTGCTCCAACTGGGTTACATCTTGGTGGCACAAAGTACATGGTTATTCAGGGAGAGGGTGGAGCTGTCATTCGTGGAAAGAAGGGCTCTAGTGGCATTACTGTGAAGAAAACTGGCCAGGCTCTGGTTTTCGGTATATATGACGAGCCCTTGACTCCAGGACAATGTAATATTATTGTGGAGAGGCTGGGGGACTACCTAATTGACCAGGGGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132
Pfam Domains
Protein Families
Profilin

Protein Analysis

132

Amino Acids

14.02

Weight (kDa)

5.17

Isoelectric Point (pI)

28.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 58, 301
AccI GTMKAC 1 cut(s) 21
AccII CGCG 1 cut(s) 68
AciI CCGC 3 cut(s) 66, 68, 111
AcoI YGGCCR 3 cut(s) 49, 69, 292
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 58, 301
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 4 cut(s) 169, 294, 334, 384
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 180
AlwNI CAGNNNCTG 2 cut(s) 301, 391
AoxI GGCC 5 cut(s) 49, 60, 69, 99, 292
ApaI GGGCCC 1 cut(s) 103
Asp700I GAANNNNTTC 1 cut(s) 158
AspS9I GGNCC 2 cut(s) 99, 100
BaeGI GKGCMC 1 cut(s) 103
BalI TGGCCA 1 cut(s) 294
BanII GRGCYC 3 cut(s) 103, 266, 327
BccI CCATC 2 cut(s) 63, 80
BceAI ACGGC 2 cut(s) 64, 159
BciT130I CCWGG 4 cut(s) 171, 296, 336, 386
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 392
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 4 cut(s) 171, 296, 336, 386
BmgT120I GGNCC 2 cut(s) 99, 100
BmiI GGNNCC 1 cut(s) 101
BmrFI CCNGG 4 cut(s) 171, 296, 336, 386
BmrI ACTGGG 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 66, 170, 385
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 301
Bse1I ACTGG 2 cut(s) 193, 295
BseBI CCWGG 4 cut(s) 171, 296, 336, 386
BseDI CCNNGG 3 cut(s) 66, 170, 385
BseLI CCNNNNNNNGG 2 cut(s) 58, 301
BseNI ACTGG 2 cut(s) 193, 295
BseSI GKGCMC 1 cut(s) 103
BseYI CCCAGC 1 cut(s) 364
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 5 cut(s) 51, 62, 71, 101, 294
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 2 cut(s) 58, 301
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 383
BsnI GGCC 5 cut(s) 51, 62, 71, 101, 294
Bso31I GGTCTC 1 cut(s) 180
Bsp120I GGGCCC 1 cut(s) 99
Bsp1286I GDGCHC 3 cut(s) 103, 266, 327
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 3 cut(s) 66, 68, 111
BspANI GGCC 5 cut(s) 51, 62, 71, 101, 294
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 180
BsrI ACTGG 2 cut(s) 193, 295
BssECI CCNNGG 3 cut(s) 66, 170, 385
BssMI GATC 1 cut(s) 25
Bst2UI CCWGG 4 cut(s) 171, 296, 336, 386
Bst4CI ACNGT 2 cut(s) 89, 280
BstDEI CTNAG 1 cut(s) 120
BstDSI CCRYGG 1 cut(s) 66
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 2 cut(s) 68, 270
BstNI CCWGG 4 cut(s) 171, 296, 336, 386
BstSCI CCNGG 4 cut(s) 169, 294, 334, 384
BstSFI CTRYAG 1 cut(s) 392
BstSLI GKGCMC 1 cut(s) 103
BstUI CGCG 1 cut(s) 68
BsuRI GGCC 5 cut(s) 51, 62, 71, 101, 294
BtgI CCRYGG 1 cut(s) 66
CaiI CAGNNNCTG 2 cut(s) 301, 391
Cfr13I GGNCC 2 cut(s) 99, 100
Cfr42I CCGCGG 1 cut(s) 69
Csp6I GTAC 1 cut(s) 214
CviAII CATG 1 cut(s) 217
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EaeI YGGCCR 3 cut(s) 49, 69, 292
EciI GGCGGA 1 cut(s) 100
Eco24I GRGCYC 3 cut(s) 103, 266, 327
Eco31I GGTCTC 1 cut(s) 180
EcoRII CCWGG 4 cut(s) 169, 294, 334, 384
EcoT38I GRGCYC 3 cut(s) 103, 266, 327
FaeI CATG 1 cut(s) 220
FaiI YATR 4 cut(s) 218, 314, 316, 318
FaqI GGGAC 1 cut(s) 383
FatI CATG 1 cut(s) 216
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 69
FriOI GRGCYC 3 cut(s) 103, 266, 327
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 267
GluI GCNGC 1 cut(s) 69
GsaI CCCAGC 1 cut(s) 368
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 5 cut(s) 51, 62, 71, 101, 294
Hin1II CATG 1 cut(s) 220
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 1 cut(s) 331
Hpy166II GTNNAC 2 cut(s) 16, 22
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 2 cut(s) 16, 22
Hpy99I CGWCG 5 cut(s) 23, 26, 50, 80, 89
HpyAV CCTTC 2 cut(s) 124, 253
HpyCH4III ACNGT 2 cut(s) 89, 280
HpyCH4IV ACGT 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 270
HpyF3I CTNAG 1 cut(s) 120
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 220
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 2 cut(s) 187, 239
MaeI CTAG 1 cut(s) 267
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 80, 192
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 2 cut(s) 146, 295
MhlI GDGCHC 3 cut(s) 103, 266, 327
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 2 cut(s) 138, 378
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 3 cut(s) 73, 226, 354
Mox20I TGGCCA 1 cut(s) 294
MroXI GAANNNNTTC 1 cut(s) 158
MscI TGGCCA 1 cut(s) 294
MslI CAYNNNNRTG 2 cut(s) 201, 278
Msp20I TGGCCA 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 68
MspR9I CCNGG 4 cut(s) 171, 296, 336, 386
MvaI CCWGG 4 cut(s) 171, 296, 336, 386
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 68, 270
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 158
PflMI CCANNNNNTGG 2 cut(s) 58, 301
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
Psp6I CCWGG 4 cut(s) 169, 294, 334, 384
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 4 cut(s) 169, 294, 334, 384
PspN4I GGNNCC 1 cut(s) 101
PspOMI GGGCCC 1 cut(s) 99
PspPI GGNCC 2 cut(s) 99, 100
PstNI CAGNNNCTG 2 cut(s) 301, 391
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 2 cut(s) 201, 278
SacII CCGCGG 1 cut(s) 69
SalI GTCGAC 1 cut(s) 20
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 25
Sau96I GGNCC 2 cut(s) 99, 100
SchI GAGTC 1 cut(s) 325
ScrFI CCNGG 4 cut(s) 171, 296, 336, 386
SduI GDGCHC 3 cut(s) 103, 266, 327
SetI ASST 4 cut(s) 15, 21, 244, 378
SfcI CTRYAG 1 cut(s) 392
SfiI GGCCNNNNNGGCC 1 cut(s) 68
Sfr303I CCGCGG 1 cut(s) 69
SgrBI CCGCGG 1 cut(s) 69
SgrDI CGTCGACG 1 cut(s) 20
SmiMI CAYNNNNRTG 2 cut(s) 201, 278
Sse9I AATT 2 cut(s) 138, 378
SsiI CCGC 3 cut(s) 66, 68, 111
SspI AATATT 1 cut(s) 349
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 4 cut(s) 169, 294, 334, 384
TaaI ACNGT 2 cut(s) 89, 280
TaiI ACGT 1 cut(s) 21
TaqI TCGA 3 cut(s) 21, 45, 162
TaqII GACCGA 1 cut(s) 68
TasI AATT 2 cut(s) 138, 378
TatI WGTACW 1 cut(s) 213
TauI GCSGC 1 cut(s) 71
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 167
Van91I CCANNNNNTGG 2 cut(s) 58, 301
XmiI GTMKAC 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.