AT4G29340

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14447338 .. 14448698
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29340.1

Sequence Viewer

Length: 405 bp
ATGTCGTGGCAAACTTACGTTGATGAGCATTTGATGTGTGATGTTGGCGATGGTCAAGGACACCACCTTACTGCTGCCGCTATCGTTGGTCATGACGGTAGCGTTTGGGCTCAGAGCGCCAACTTCCCTCAGTTCAAGGGACAGGAGTTCAGTGATATTATGAAAGATTTCGACGAACCGGGTCACTTGGCACCCACGGGATTATTCATGGCAGGAGCAAAGTACATGGTGATCCAAGGTGAGCCCGGGGCTGTAATCCGTGGCAAGAAGGGAGCAGGAGGCATAACGATAAAGAAAACAGGACAGTCATGTGTGTTTGGGATCTATGAAGAGCCAGTGACACCAGGACAGTGCAACATGGTCGTCGAGAGGTTGGGTGATTACCTCCTCGAACAGGGTCTCTAG

Protein Analysis

134

Amino Acids

14.42

Weight (kDa)

5.02

Isoelectric Point (pI)

26.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Profilin PF00235 1 - 134 1e-41 Profilin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 190
AciI CCGC 1 cut(s) 78
AclWI GGATC 2 cut(s) 226, 329
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 394
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 343
AlwI GGATC 2 cut(s) 226, 329
Ama87I CYCGRG 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 74
Asp700I GAANNNNTTC 1 cut(s) 167
AspLEI GCGC 1 cut(s) 119
AsuC2I CCSGG 3 cut(s) 180, 246, 247
AsuHPI GGTGA 3 cut(s) 241, 251, 389
AvaI CYCGRG 1 cut(s) 245
BanI GGYRCC 1 cut(s) 190
BanII GRGCYC 2 cut(s) 112, 246
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 44
BcgI CGANNNNNNTGC 2 cut(s) 343, 377
BciT130I CCWGG 1 cut(s) 345
BcnI CCSGG 3 cut(s) 180, 246, 247
BfaI CTAG 1 cut(s) 403
BfoI RGCGCY 1 cut(s) 120
BisI GCNGC 2 cut(s) 75, 78
BlsI GCNGC 2 cut(s) 76, 79
Bme1390I CCNGG 4 cut(s) 180, 246, 247, 345
BmeT110I CYCGRG 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 4 cut(s) 180, 246, 247, 345
BpuMI CCSGG 3 cut(s) 180, 246, 247
BsaJI CCNNGG 5 cut(s) 195, 235, 245, 246, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 335
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 5 cut(s) 195, 235, 245, 246, 259
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMII CTCAG 2 cut(s) 125, 143
BseNI ACTGG 1 cut(s) 335
BseRI GAGGAG 1 cut(s) 377
BseXI GCAGC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 2 cut(s) 179, 246
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 394
BsmFI GGGAC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 2 cut(s) 112, 246
Bsp143I GATC 2 cut(s) 231, 321
BspACI CCGC 1 cut(s) 78
BspCNI CTCAG 2 cut(s) 124, 142
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 2 cut(s) 226, 329
BspQI GCTCTTC 1 cut(s) 324
BspT107I GGYRCC 1 cut(s) 190
BsrI ACTGG 1 cut(s) 335
BssECI CCNNGG 5 cut(s) 195, 235, 245, 246, 259
BssMI GATC 2 cut(s) 231, 321
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 3 cut(s) 98, 306, 351
Bst6I CTCTTC 1 cut(s) 324
BstDEI CTNAG 2 cut(s) 111, 129
BstDSI CCRYGG 2 cut(s) 195, 259
BstENI CCTNNNNNAGG 1 cut(s) 392
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 2 cut(s) 234, 324
BstMBI GATC 2 cut(s) 231, 321
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 1 cut(s) 345
BstSCI CCNGG 4 cut(s) 178, 244, 245, 343
BstV1I GCAGC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BtgI CCRYGG 2 cut(s) 195, 259
BtgZI GCGATG 1 cut(s) 63
BtsIMutI CAGTG 3 cut(s) 157, 342, 356
CciI TCATGA 1 cut(s) 91
CfoI GCGC 1 cut(s) 119
Cfr9I CCCGGG 1 cut(s) 245
Csp6I GTAC 1 cut(s) 223
CviAII CATG 5 cut(s) 92, 208, 226, 309, 358
CviJI RGCY 4 cut(s) 110, 244, 251, 334
CviKI_1 RGCY 4 cut(s) 110, 244, 251, 334
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 2 cut(s) 111, 129
DpnI GATC 2 cut(s) 233, 323
DpnII GATC 2 cut(s) 231, 321
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 235
Eco24I GRGCYC 2 cut(s) 112, 246
Eco88I CYCGRG 1 cut(s) 245
EcoNI CCTNNNNNAGG 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 343
EcoT14I CCWWGG 1 cut(s) 235
EcoT38I GRGCYC 2 cut(s) 112, 246
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 5 cut(s) 95, 211, 229, 312, 361
FaiI YATR 8 cut(s) 93, 161, 209, 227, 284, 310, 327, 359
FaqI GGGAC 1 cut(s) 153
FatI CATG 5 cut(s) 91, 207, 225, 308, 357
Fnu4HI GCNGC 2 cut(s) 75, 78
FriOI GRGCYC 2 cut(s) 112, 246
Fsp4HI GCNGC 2 cut(s) 75, 78
FspBI CTAG 1 cut(s) 403
GlaI GCGC 1 cut(s) 118
GluI GCNGC 2 cut(s) 75, 78
HaeII RGCGCY 1 cut(s) 120
HapII CCGG 2 cut(s) 179, 246
HhaI GCGC 1 cut(s) 119
Hin1II CATG 5 cut(s) 95, 211, 229, 312, 361
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HpaII CCGG 2 cut(s) 179, 246
HphI GGTGA 3 cut(s) 241, 251, 389
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 2 cut(s) 92, 367
Hpy99I CGWCG 2 cut(s) 176, 368
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 3 cut(s) 98, 306, 351
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 2 cut(s) 111, 129
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 5 cut(s) 95, 211, 229, 312, 361
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 2 cut(s) 231, 321
LguI GCTCTTC 1 cut(s) 324
LmnI GCTCC 2 cut(s) 215, 272
Lsp1109I GCAGC 1 cut(s) 61
MaeI CTAG 1 cut(s) 403
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 2 cut(s) 182, 337
MalI GATC 2 cut(s) 233, 323
MboI GATC 2 cut(s) 231, 321
MboII GAAGA 1 cut(s) 341
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 2 cut(s) 112, 246
MnlI CCTC 5 cut(s) 138, 272, 363, 395, 398
MroXI GAANNNNTTC 1 cut(s) 167
MspI CCGG 2 cut(s) 179, 246
MspR9I CCNGG 4 cut(s) 180, 246, 247, 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 116
NciI CCSGG 3 cut(s) 180, 246, 247
NdeII GATC 2 cut(s) 231, 321
NlaIII CATG 5 cut(s) 95, 211, 229, 312, 361
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 2 cut(s) 182, 337
PagI TCATGA 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 324
PdmI GAANNNNTTC 1 cut(s) 167
PkrI GCNGC 2 cut(s) 76, 79
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 192
PsuI RGATCY 1 cut(s) 321
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SapI GCTCTTC 1 cut(s) 324
SatI GCNGC 2 cut(s) 75, 78
Sau3AI GATC 2 cut(s) 231, 321
ScrFI CCNGG 4 cut(s) 180, 246, 247, 345
SduI GDGCHC 2 cut(s) 112, 246
SetI ASST 5 cut(s) 21, 69, 241, 374, 387
SmaI CCCGGG 1 cut(s) 247
SsiI CCGC 1 cut(s) 78
SspMI CTAG 1 cut(s) 403
StyD4I CCNGG 4 cut(s) 178, 244, 245, 343
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 3 cut(s) 98, 306, 351
TaiI ACGT 1 cut(s) 21
TaqI TCGA 3 cut(s) 171, 366, 390
TatI WGTACW 1 cut(s) 222
TauI GCSGC 1 cut(s) 80
TscAI CASTG 3 cut(s) 157, 342, 356
TseFI GTSAC 2 cut(s) 182, 337
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 2 cut(s) 182, 337
TspDTI ATGAA 3 cut(s) 176, 196, 342
TspGWI ACGGA 1 cut(s) 248
TspMI CCCGGG 1 cut(s) 245
TspRI CASTG 3 cut(s) 157, 342, 356
XagI CCTNNNNNAGG 1 cut(s) 392
XmaI CCCGGG 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.