Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000848

Physical Location & Seq

Genomic Coordinates Forward (+)

21092094 .. 21093478

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26231.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCGTGGCAGGCGTATGTGGACGATCACTTGATGTGTGACATCGAAGGTCACCACCTGACTGCGGCGGCCATCGTCGGTCACGACAGTAGTGTGTGGGCTCAGAGCTCCAGCTTCCCTCAGTTCAAGCCGGAAGAAGTTGCAGCGATTATGAAGGATTTTGATGAGCCAGGGTCTCTTGCCCCGACTGGACTGCACCTTGGTGGCACAAAGTACATGGTTATTCAAGGGGAGAGTGGAGCTGTGATTCGTGGAAAGAAGGGTTCTGGTGGCATTACTGTGAAGAAAACCGGGCAGGCTATGATTTTAGGTATATACGATGAGCCGATTACTCCTGGACAGTGTAACATGATCGTGGAAAGGTTGGGAGACTATCTGATTGATCAAGGCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

132

Amino Acids

14.03

Weight (kDa)

5.0

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	1 - 131	2.3e-45	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19770 AT4G29340
fragaria_vesca	FvH4_1g06470 FvH4_2g26231 FvH4_2g35200 FvH4_6g32550
malus_domestica	MD02G1068000.v1.1 MD08G1109600.v1.1 MD09G1201100.v1.1 MD09G1201400.v1.1 MD15G1089500.v1.1 MD15G1199600.v1.1
prunus_persica	Prupe.1G444100_v2.0.a1 Prupe.1G444100_v2.0.a1 Prupe.1G444100_v2.0.a1 Prupe.1G504400_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.7G217600_v2.0.a1 Prupe.7G217600_v2.0.a1
pyrus_communis	pycom02g05380 pycom09g11810 pycom15g08390 pycom15g17710
rosa_chinensis	RchiOBHm_Chr1g0361111 RchiOBHm_Chr2g0092221 RchiOBHm_Chr2g0140921 RchiOBHm_Chr6g0294811 RchiOBHm_Chr6g0306741
rosa_laevigata	RLG00000010769 RLG00000011838 RLG00000016287 RLG00000019902
rosa_multiflora	Rmu_co8510555.1_g000001 Rmu_sc0000524.1_g000025 Rmu_sc0001331.1_g000001 Rmu_sc0003848.1_g000011 Rmu_sc0017785.1_g000002 Rmu_sc0017786.1_g000002
rosa_roxburghii	Rroxscaffold_2G00104380 Rroxscaffold_2G00149360 Rroxscaffold_7G00161500 Rroxscaffold_7G00172990
rosa_rugosa	Rorug01G0285600 Rorug02G0023800 Rorug02G0365700 Rorug06G0247000 Rorug06G0352300
rosa_samantha	Rh2AG069500 Rh2AG069600 Rh2AG417100 Rh2BG069100 Rh2BG427000 Rh2CG070200 Rh2CG070300 Rh2CG403400 Rh6AG360600 Rh6AG464400 Rh6CG374300 Rh6CG478700 Rh6DG360800 Rh6DG465800
rosa_wichuraiana	Rw2G006260 Rw2G034130 Rw6G031460 Rw6G040470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	65, 68
AcoI	YGGCCR	1 cut(s)	69
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	64
AgsI	TTSAA	2 cut(s)	127, 227
AjnI	CCWGG	2 cut(s)	169, 334
AleI	CACNNNNGTG	1 cut(s)	201
AluBI	AGCT	3 cut(s)	108, 114, 242
AluI	AGCT	3 cut(s)	108, 114, 242
Alw21I	GWGCWC	1 cut(s)	110
Alw26I	GTCTC	2 cut(s)	180, 363
AoxI	GGCC	2 cut(s)	69, 388
ApeKI	GCWGC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	44
BanII	GRGCYC	2 cut(s)	103, 110
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	80
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	2 cut(s)	171, 336
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	180, 363
BfmI	CTRYAG	1 cut(s)	392
BisI	GCNGC	3 cut(s)	66, 69, 144
BlsI	GCNGC	3 cut(s)	67, 70, 145
Bme1390I	CCNGG	3 cut(s)	171, 292, 336
BmrFI	CCNGG	3 cut(s)	171, 292, 336
BpmI	CTGGAG	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	292
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	170, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	2 cut(s)	171, 336
BseDI	CCNNGG	2 cut(s)	170, 199
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	116, 134
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	155
BsgI	GTGCAG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	71, 390
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	2 cut(s)	131, 291
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	2 cut(s)	180, 363
BsnI	GGCC	2 cut(s)	71, 390
Bso31I	GGTCTC	1 cut(s)	180
Bsp1286I	GDGCHC	2 cut(s)	103, 110
Bsp143I	GATC	3 cut(s)	25, 351, 382
BspACI	CCGC	2 cut(s)	65, 68
BspANI	GGCC	2 cut(s)	71, 390
BspCNI	CTCAG	2 cut(s)	115, 133
BspTNI	GGTCTC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	170, 199
BssMI	GATC	3 cut(s)	25, 351, 382
BssT1I	CCWWGG	1 cut(s)	199
Bst2UI	CCWGG	2 cut(s)	171, 336
Bst4CI	ACNGT	3 cut(s)	89, 280, 342
BstC8I	GCNNGC	2 cut(s)	12, 297
BstDEI	CTNAG	2 cut(s)	102, 120
BstEII	GGTNACC	1 cut(s)	50
BstKTI	GATC	3 cut(s)	28, 354, 385
BstMAI	GTCTC	2 cut(s)	180, 363
BstMBI	GATC	3 cut(s)	25, 351, 382
BstNI	CCWGG	2 cut(s)	171, 336
BstPI	GGTNACC	1 cut(s)	50
BstSCI	CCNGG	3 cut(s)	169, 290, 334
BstSFI	CTRYAG	1 cut(s)	392
BstV1I	GCAGC	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	71, 390
BtsIMutI	CAGTG	1 cut(s)	347
Cac8I	GCNNGC	2 cut(s)	12, 297
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	217, 349
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	102, 120
DpnI	GATC	3 cut(s)	27, 353, 384
DpnII	GATC	3 cut(s)	25, 351, 382
EaeI	YGGCCR	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	199
Eco147I	AGGCCT	1 cut(s)	390
Eco24I	GRGCYC	2 cut(s)	103, 110
Eco31I	GGTCTC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	108
EcoO65I	GGTNACC	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	169, 334
EcoT14I	CCWWGG	1 cut(s)	199
EcoT38I	GRGCYC	2 cut(s)	103, 110
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	2 cut(s)	220, 352
FaiI	YATR	8 cut(s)	18, 152, 218, 302, 314, 316, 350, 394
FatI	CATG	2 cut(s)	216, 348
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	3 cut(s)	66, 69, 144
FriOI	GRGCYC	2 cut(s)	103, 110
Fsp4HI	GCNGC	3 cut(s)	66, 69, 144
GluI	GCNGC	3 cut(s)	66, 69, 144
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	2 cut(s)	71, 390
HapII	CCGG	2 cut(s)	131, 291
Hin1II	CATG	2 cut(s)	220, 352
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	2 cut(s)	131, 291
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	105, 378
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	41, 148, 253
HpyCH4III	ACNGT	3 cut(s)	89, 280, 342
HpyCH4V	TGCA	2 cut(s)	143, 196
HpyF3I	CTNAG	2 cut(s)	102, 120
Hsp92II	CATG	2 cut(s)	220, 352
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	25, 351, 382
LmnI	GCTCC	2 cut(s)	113, 239
Lsp1109I	GCAGC	1 cut(s)	155
MaeIII	GTNAC	4 cut(s)	38, 50, 80, 344
MalI	GATC	3 cut(s)	27, 353, 384
MboI	GATC	3 cut(s)	25, 351, 382
MboII	GAAGA	2 cut(s)	146, 295
MhlI	GDGCHC	2 cut(s)	103, 110
MnlI	CCTC	1 cut(s)	129
MslI	CAYNNNNRTG	3 cut(s)	201, 278, 353
MspI	CCGG	2 cut(s)	131, 291
MspR9I	CCNGG	3 cut(s)	171, 292, 336
MvaI	CCWGG	2 cut(s)	171, 336
NciI	CCSGG	1 cut(s)	292
NdeII	GATC	3 cut(s)	25, 351, 382
NlaIII	CATG	2 cut(s)	220, 352
NmuCI	GTSAC	3 cut(s)	38, 50, 80
OliI	CACNNNNGTG	1 cut(s)	201
PceI	AGGCCT	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 81
PfeI	GAWTC	1 cut(s)	247
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	67, 70, 145
Psp124BI	GAGCTC	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	169, 334
PspEI	GGTNACC	1 cut(s)	50
PspGI	CCWGG	2 cut(s)	169, 334
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	3 cut(s)	201, 278, 353
SacI	GAGCTC	1 cut(s)	110
SatI	GCNGC	3 cut(s)	66, 69, 144
Sau3AI	GATC	3 cut(s)	25, 351, 382
ScrFI	CCNGG	3 cut(s)	171, 292, 336
SduI	GDGCHC	2 cut(s)	103, 110
SetI	ASST	8 cut(s)	52, 60, 110, 116, 201, 244, 313, 365
SfcI	CTRYAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	3 cut(s)	201, 278, 353
SseBI	AGGCCT	1 cut(s)	390
SsiI	CCGC	2 cut(s)	65, 68
SstI	GAGCTC	1 cut(s)	110
StuI	AGGCCT	1 cut(s)	390
StyD4I	CCNGG	3 cut(s)	169, 290, 334
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	3 cut(s)	89, 280, 342
TaqI	TCGA	1 cut(s)	45
TaqII	GACCGA	1 cut(s)	68
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	2 cut(s)	68, 71
TfiI	GAWTC	1 cut(s)	247
TscAI	CASTG	1 cut(s)	347
TseFI	GTSAC	3 cut(s)	38, 50, 80
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	3 cut(s)	38, 50, 80
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.