Rmu_sc0017786.1_g000002

Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017786.1
OG0000848
Physical Location & Seq
Forward (+)
5430 .. 6506
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017786.1_g000002.1.cds

Sequence Viewer

Length: 366 bp
atgtcgtggcagcagtacgtggacgagcacttgatgtgcgaaatcgacggcaacgccctcacggccgccgccatcctcggccaagacggcagcgtttggtccaagagcgccaactttcctcagtttaagccggaagagattgcggccattatgaaagattttgatcaacccggaacgcttgcccccactggattattccttggagggactaagtatatggtgattcaaggtgaagccggagcagtaattcgtggaaagaagggctctggtggcattactgttaagaagaccaggtctgtaattgcactgttactatttcatggtgaactaggagtgagaacgaagttgttgctgcttggaatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0005938 GO:0006996 GO:0007010 GO:0007015 GO:0007275 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0008154 GO:0009506 GO:0009507 GO:0009524 GO:0009536 GO:0009653 GO:0009791 GO:0009826 GO:0009987 GO:0010229 GO:0010639 GO:0015629 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022622 GO:0030029 GO:0030036 GO:0030054 GO:0030312 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0031974 GO:0031981 GO:0032271 GO:0032272 GO:0032501 GO:0032502 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0033036 GO:0033043 GO:0034613 GO:0040007 GO:0042989 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045185 GO:0048046 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0055044 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0090567 GO:0090696 GO:0097435 GO:0099402 GO:0099568 GO:0110053 GO:1902903 GO:1902904
KEGG Pathways
Metabolic & Signaling
ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132
Pfam Domains
Protein Families
Profilin

Protein Analysis

121

Amino Acids

12.95

Weight (kDa)

7.87

Isoelectric Point (pI)

26.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 66, 69, 143
AcoI YGGCCR 3 cut(s) 63, 79, 144
AfaI GTAC 1 cut(s) 17
AgsI TTSAA 1 cut(s) 227
AjnI CCWGG 1 cut(s) 290
Alw21I GWGCWC 1 cut(s) 30
AoxI GGCC 3 cut(s) 63, 79, 144
ApeKI GCWGC 3 cut(s) 10, 90, 352
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 3 cut(s) 232, 242, 335
AvaII GGWCC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 3 cut(s) 22, 102, 339
BccI CCATC 1 cut(s) 80
BceAI ACGGC 3 cut(s) 64, 78, 103
BcgI CGANNNNNNTGC 2 cut(s) 331, 365
BciT130I CCWGG 1 cut(s) 292
BclI TGATCA 1 cut(s) 163
BcnI CCSGG 1 cut(s) 171
BfaI CTAG 1 cut(s) 329
BfoI RGCGCY 1 cut(s) 111
BglI GCCNNNNNGGC 2 cut(s) 62, 87
BisI GCNGC 6 cut(s) 11, 66, 69, 91, 144, 353
BlsI GCNGC 6 cut(s) 12, 67, 70, 92, 145, 354
Bme1390I CCNGG 2 cut(s) 171, 292
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BmrFI CCNGG 2 cut(s) 171, 292
BpiI GAAGAC 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 19
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 76, 199
Bse1I ACTGG 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 76, 199
BseGI GGATG 1 cut(s) 72
BseJI GATNNNNATC 1 cut(s) 162
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 1 cut(s) 193
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 3 cut(s) 22, 102, 339
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 3 cut(s) 65, 81, 146
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 30
BsiSI CCGG 3 cut(s) 131, 171, 237
BslFI GGGAC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 220
BsnI GGCC 3 cut(s) 65, 81, 146
Bsp1286I GDGCHC 2 cut(s) 30, 266
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 3 cut(s) 66, 69, 143
BspANI GGCC 3 cut(s) 65, 81, 146
BspCNI CTCAG 1 cut(s) 133
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 76, 199
BssMI GATC 1 cut(s) 163
BssT1I CCWWGG 1 cut(s) 199
Bst2UI CCWGG 1 cut(s) 292
Bst4CI ACNGT 2 cut(s) 280, 309
Bst6I CTCTTC 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 120, 210
BstF5I GGATG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 62, 87, 270
BstNI CCWGG 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 169, 290
BstV1I GCAGC 3 cut(s) 22, 102, 339
BstV2I GAAGAC 1 cut(s) 293
BstZI CGGCCG 1 cut(s) 63
BsuRI GGCC 3 cut(s) 65, 81, 146
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 2 cut(s) 186, 305
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 99
CsiI ACCWGGT 1 cut(s) 290
Csp6I GTAC 1 cut(s) 16
CviAII CATG 1 cut(s) 320
CviJI RGCY 6 cut(s) 65, 81, 130, 146, 236, 264
CviKI_1 RGCY 6 cut(s) 65, 81, 130, 146, 236, 264
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 2 cut(s) 120, 210
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 3 cut(s) 63, 79, 144
EagI CGGCCG 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EclXI CGGCCG 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 99
Eco52I CGGCCG 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 266
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 1 cut(s) 323
FaiI YATR 4 cut(s) 152, 216, 218, 321
FaqI GGGAC 1 cut(s) 220
FatI CATG 1 cut(s) 319
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 6 cut(s) 11, 66, 69, 91, 144, 353
FokI GGATG 1 cut(s) 59
FriOI GRGCYC 1 cut(s) 266
Fsp4HI GCNGC 6 cut(s) 11, 66, 69, 91, 144, 353
FspBI CTAG 1 cut(s) 329
GlaI GCGC 1 cut(s) 109
GluI GCNGC 6 cut(s) 11, 66, 69, 91, 144, 353
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 3 cut(s) 65, 81, 146
HapII CCGG 3 cut(s) 131, 171, 237
HhaI GCGC 1 cut(s) 110
Hin1II CATG 1 cut(s) 323
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HinfI GANTC 1 cut(s) 223
HpaII CCGG 3 cut(s) 131, 171, 237
HphI GGTGA 3 cut(s) 232, 242, 335
Hpy166II GTNNAC 2 cut(s) 22, 326
Hpy8I GTNNAC 2 cut(s) 22, 326
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 253
HpyCH4III ACNGT 2 cut(s) 280, 309
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 87, 270
HpyF3I CTNAG 2 cut(s) 120, 210
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 1 cut(s) 323
HspAI GCGC 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 7 cut(s) 144, 174, 184, 250, 252, 277, 304
Lsp1109I GCAGC 3 cut(s) 22, 102, 339
MabI ACCWGGT 1 cut(s) 290
MaeI CTAG 1 cut(s) 329
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 309
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 2 cut(s) 146, 298
MhlI GDGCHC 2 cut(s) 30, 266
MluCI AATT 2 cut(s) 246, 300
MnlI CCTC 4 cut(s) 68, 86, 129, 197
MseI TTAA 2 cut(s) 126, 282
MspI CCGG 3 cut(s) 131, 171, 237
MspR9I CCNGG 2 cut(s) 171, 292
MvaI CCWGG 1 cut(s) 292
MwoI GCNNNNNNNGC 3 cut(s) 62, 87, 270
NciI CCSGG 1 cut(s) 171
NdeII GATC 1 cut(s) 163
NlaIII CATG 1 cut(s) 323
NmeAIII GCCGAG 1 cut(s) 57
PfeI GAWTC 1 cut(s) 223
PflFI GACNNNGTC 1 cut(s) 292
PkrI GCNGC 6 cut(s) 12, 67, 70, 92, 145, 354
Ppu21I YACGTR 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 290
PspPI GGNCC 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 292
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SaqAI TTAA 2 cut(s) 126, 282
SatI GCNGC 6 cut(s) 11, 66, 69, 91, 144, 353
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 99
ScrFI CCNGG 2 cut(s) 171, 292
SduI GDGCHC 2 cut(s) 30, 266
SetI ASST 3 cut(s) 21, 232, 296
SexAI ACCWGGT 1 cut(s) 290
SinI GGWCC 1 cut(s) 99
Sse9I AATT 2 cut(s) 246, 300
SsiI CCGC 3 cut(s) 66, 69, 143
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 2 cut(s) 169, 290
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 2 cut(s) 280, 309
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 45
TasI AATT 2 cut(s) 246, 300
TauI GCSGC 3 cut(s) 68, 71, 146
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 2 cut(s) 126, 282
Tru9I TTAA 2 cut(s) 126, 282
TscAI CASTG 2 cut(s) 193, 312
TseI GCWGC 3 cut(s) 10, 90, 352
TspDTI ATGAA 2 cut(s) 167, 308
TspRI CASTG 2 cut(s) 193, 312
Tth111I GACNNNGTC 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 99
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.