Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000848

Physical Location & Seq

Genomic Coordinates Forward (+)

86953628 .. 86954730

Gene Structure 1103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00149360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTCGTGGCAGACTTATGTAGATGAACACTTGATGTGTGACATTGATGGCAATGGCCAGCATCTTGCTGCTGCGGCCATTGTTGGTCATGATGGCAGCCCCTGGGCCAAGAGTGCTAACTTCCCTCAGTTTAAACCTGAGGAGATCACTGCTATCATGAAAGATTTCGATGAACCTGGAACCCTTGCTCCGACTGGCTTGCACCTTGGGGGAGTAAAGTACATGGTAATCCAGGGAGAGCCCGGTGCTGTTATCCGTGGGAAAAAGGGCTCTGGAGGCATCACTATAAAGAAAACTGGACAAGCACTAGTATTCGGAATCTATGAAGAACCAGTGACTCCAGGACAGTGCAACATGGTTGTTGAGAGGTTGGGAGATTACCTTGCTGATCAAGGCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0042989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0065007 GO:0065008 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0099568 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

133

Amino Acids

14.2

Weight (kDa)

5.04

Isoelectric Point (pI)

22.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	1 - 133	9.5e-45	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19770 AT4G29340
fragaria_vesca	FvH4_1g06470 FvH4_2g26231 FvH4_2g35200 FvH4_6g32550
malus_domestica	MD02G1068000.v1.1 MD08G1109600.v1.1 MD09G1201100.v1.1 MD09G1201400.v1.1 MD15G1089500.v1.1 MD15G1199600.v1.1
prunus_persica	Prupe.1G444100_v2.0.a1 Prupe.1G444100_v2.0.a1 Prupe.1G444100_v2.0.a1 Prupe.1G504400_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.7G217600_v2.0.a1 Prupe.7G217600_v2.0.a1
pyrus_communis	pycom02g05380 pycom09g11810 pycom15g08390 pycom15g17710
rosa_chinensis	RchiOBHm_Chr1g0361111 RchiOBHm_Chr2g0092221 RchiOBHm_Chr2g0140921 RchiOBHm_Chr6g0294811 RchiOBHm_Chr6g0306741
rosa_laevigata	RLG00000010769 RLG00000011838 RLG00000016287 RLG00000019902
rosa_multiflora	Rmu_co8510555.1_g000001 Rmu_sc0000524.1_g000025 Rmu_sc0001331.1_g000001 Rmu_sc0003848.1_g000011 Rmu_sc0017785.1_g000002 Rmu_sc0017786.1_g000002
rosa_roxburghii	Rroxscaffold_2G00104380 Rroxscaffold_2G00149360 Rroxscaffold_7G00161500 Rroxscaffold_7G00172990
rosa_rugosa	Rorug01G0285600 Rorug02G0023800 Rorug02G0365700 Rorug06G0247000 Rorug06G0352300
rosa_samantha	Rh2AG069500 Rh2AG069600 Rh2AG417100 Rh2BG069100 Rh2BG427000 Rh2CG070200 Rh2CG070300 Rh2CG403400 Rh6AG360600 Rh6AG464400 Rh6CG374300 Rh6CG478700 Rh6DG360800 Rh6DG465800
rosa_wichuraiana	Rw2G006260 Rw2G034130 Rw6G031460 Rw6G040470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	2 cut(s)	55, 75
AfaI	GTAC	1 cut(s)	221
AhlI	ACTAGT	1 cut(s)	307
AjnI	CCWGG	4 cut(s)	101, 175, 231, 340
AloI	GAACNNNNNNTCC	2 cut(s)	172, 204
AlwNI	CAGNNNCTG	1 cut(s)	102
AoxI	GGCC	4 cut(s)	55, 75, 105, 394
ApeKI	GCWGC	3 cut(s)	68, 71, 96
Asp700I	GAANNNNTTC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	243
AxyI	CCTNAGG	1 cut(s)	138
BalI	TGGCCA	1 cut(s)	57
BanII	GRGCYC	2 cut(s)	243, 272
BbvI	GCAGC	3 cut(s)	55, 58, 108
BccI	CCATC	2 cut(s)	41, 86
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	4 cut(s)	103, 177, 233, 342
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	243
BcuI	ACTAGT	1 cut(s)	307
BfaI	CTAG	2 cut(s)	308, 400
BisI	GCNGC	4 cut(s)	69, 72, 75, 97
BlsI	GCNGC	4 cut(s)	70, 73, 76, 98
Bme1390I	CCNGG	5 cut(s)	103, 177, 233, 243, 342
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	5 cut(s)	103, 177, 233, 243, 342
BmsI	GCATC	2 cut(s)	70, 288
BpmI	CTGGAG	2 cut(s)	294, 324
BpuMI	CCSGG	1 cut(s)	243
BsaJI	CCNNGG	5 cut(s)	101, 102, 205, 232, 256
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bse1I	ACTGG	3 cut(s)	199, 301, 332
Bse21I	CCTNAGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	58
BseBI	CCWGG	4 cut(s)	103, 177, 233, 342
BseDI	CCNNGG	5 cut(s)	101, 102, 205, 232, 256
BseMI	GCAATG	1 cut(s)	58
BseMII	CTCAG	2 cut(s)	129, 140
BseNI	ACTGG	3 cut(s)	199, 301, 332
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	3 cut(s)	55, 58, 108
BshFI	GGCC	4 cut(s)	57, 77, 107, 396
BsiSI	CCGG	1 cut(s)	243
BsnI	GGCC	4 cut(s)	57, 77, 107, 396
Bsp1286I	GDGCHC	2 cut(s)	243, 272
Bsp143I	GATC	2 cut(s)	144, 388
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	4 cut(s)	57, 77, 107, 396
BspCNI	CTCAG	2 cut(s)	130, 139
BspHI	TCATGA	2 cut(s)	88, 156
BspLI	GGNNCC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	58
BsrI	ACTGG	3 cut(s)	199, 301, 332
BssECI	CCNNGG	5 cut(s)	101, 102, 205, 232, 256
BssMI	GATC	2 cut(s)	144, 388
BssT1I	CCWWGG	1 cut(s)	205
Bst2UI	CCWGG	4 cut(s)	103, 177, 233, 342
Bst4CI	ACNGT	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	59, 200
BstDEI	CTNAG	2 cut(s)	126, 138
BstDSI	CCRYGG	1 cut(s)	256
BstKTI	GATC	2 cut(s)	147, 391
BstMBI	GATC	2 cut(s)	144, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 113, 276
BstNI	CCWGG	4 cut(s)	103, 177, 233, 342
BstSCI	CCNGG	5 cut(s)	101, 175, 231, 241, 340
BstV1I	GCAGC	3 cut(s)	55, 58, 108
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	4 cut(s)	57, 77, 107, 396
BtgI	CCRYGG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	3 cut(s)	147, 339, 353
Cac8I	GCNNGC	2 cut(s)	59, 200
CaiI	CAGNNNCTG	1 cut(s)	102
CciI	TCATGA	2 cut(s)	88, 156
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	4 cut(s)	89, 157, 223, 355
CviJI	RGCY	8 cut(s)	57, 77, 99, 107, 198, 241, 270, 396
CviKI_1	RGCY	8 cut(s)	57, 77, 99, 107, 198, 241, 270, 396
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	126, 138
DpnI	GATC	2 cut(s)	146, 390
DpnII	GATC	2 cut(s)	144, 388
DraI	TTTAAA	1 cut(s)	133
EaeI	YGGCCR	2 cut(s)	55, 75
Eco130I	CCWWGG	1 cut(s)	205
Eco147I	AGGCCT	1 cut(s)	396
Eco24I	GRGCYC	2 cut(s)	243, 272
Eco81I	CCTNAGG	1 cut(s)	138
EcoRII	CCWGG	4 cut(s)	101, 175, 231, 340
EcoT14I	CCWWGG	1 cut(s)	205
EcoT38I	GRGCYC	2 cut(s)	243, 272
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	4 cut(s)	92, 160, 226, 358
FaiI	YATR	7 cut(s)	18, 90, 158, 224, 287, 324, 356
FatI	CATG	4 cut(s)	88, 156, 222, 354
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	4 cut(s)	69, 72, 75, 97
FriOI	GRGCYC	2 cut(s)	243, 272
Fsp4HI	GCNGC	4 cut(s)	69, 72, 75, 97
FspBI	CTAG	2 cut(s)	308, 400
GluI	GCNGC	4 cut(s)	69, 72, 75, 97
GsuI	CTGGAG	2 cut(s)	294, 324
HaeIII	GGCC	4 cut(s)	57, 77, 107, 396
HapII	CCGG	1 cut(s)	243
Hin1II	CATG	4 cut(s)	92, 160, 226, 358
HinfI	GANTC	2 cut(s)	318, 337
HpaII	CCGG	1 cut(s)	243
Hpy188I	TCNGA	2 cut(s)	192, 317
Hpy188III	TCNNGA	3 cut(s)	89, 157, 273
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4V	TGCA	2 cut(s)	202, 351
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 113, 276
HpyF3I	CTNAG	2 cut(s)	126, 138
Hsp92II	CATG	4 cut(s)	92, 160, 226, 358
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	2 cut(s)	144, 388
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	3 cut(s)	55, 58, 108
LweI	GCATC	2 cut(s)	70, 288
MaeI	CTAG	2 cut(s)	308, 400
MaeIII	GTNAC	2 cut(s)	38, 334
MalI	GATC	2 cut(s)	146, 390
MboI	GATC	2 cut(s)	144, 388
MboII	GAAGA	1 cut(s)	338
MhlI	GDGCHC	2 cut(s)	243, 272
MlsI	TGGCCA	1 cut(s)	57
MluNI	TGGCCA	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	4 cut(s)	133, 135, 269, 360
Mox20I	TGGCCA	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	1 cut(s)	132
Msp20I	TGGCCA	1 cut(s)	57
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	5 cut(s)	103, 177, 233, 243, 342
MssI	GTTTAAAC	1 cut(s)	133
MvaI	CCWGG	4 cut(s)	103, 177, 233, 342
MwoI	GCNNNNNNNGC	3 cut(s)	74, 113, 276
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	2 cut(s)	144, 388
NlaIII	CATG	4 cut(s)	92, 160, 226, 358
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	2 cut(s)	38, 334
PagI	TCATGA	2 cut(s)	88, 156
PasI	CCCWGGG	1 cut(s)	102
PceI	AGGCCT	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	318
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	4 cut(s)	70, 73, 76, 98
PleI	GAGTC	1 cut(s)	331
PmeI	GTTTAAAC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	331
Psp6I	CCWGG	4 cut(s)	101, 175, 231, 340
PspGI	CCWGG	4 cut(s)	101, 175, 231, 340
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	105
PstNI	CAGNNNCTG	1 cut(s)	102
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	4 cut(s)	69, 72, 75, 97
Sau3AI	GATC	2 cut(s)	144, 388
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	5 cut(s)	103, 177, 233, 243, 342
SduI	GDGCHC	2 cut(s)	243, 272
SetI	ASST	5 cut(s)	139, 178, 207, 371, 384
SfaNI	GCATC	2 cut(s)	70, 288
SpeI	ACTAGT	1 cut(s)	307
SseBI	AGGCCT	1 cut(s)	396
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	2 cut(s)	308, 400
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	5 cut(s)	101, 175, 231, 241, 340
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	348
TaqI	TCGA	1 cut(s)	168
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	318
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	3 cut(s)	154, 339, 353
TseFI	GTSAC	2 cut(s)	38, 334
TseI	GCWGC	3 cut(s)	68, 71, 96
Tsp45I	GTSAC	2 cut(s)	38, 334
TspDTI	ATGAA	4 cut(s)	39, 173, 186, 339
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	3 cut(s)	154, 339, 353
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	2 cut(s)	308, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.