Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000848

Physical Location & Seq

Genomic Coordinates Forward (+)

19619022 .. 19620401

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G217600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTCGTGGCAGACCTACGTGGATGACCACTTGATGTGTGACATTGACGGCCAAGGCCAGCATCTCTCCGCGGCTGCCATTATCGGTCTCGATGGCAGTGTCTGGGCCAAGAGCGCTTCCTTCCCCCAGTTCAAGCCAGAGGAGATGACTGGGATCAACAAGGATTTCGAAGAACCGGGTCATCTTGCTCCAACCGGGTTGCACCTTGGGGGCGCAAAGTACATGGTAATCCAGGGAGAGCCTGGCGCTGTCATCCGTGGAAAGAAGGGCTCTGGAGGTATCACTATAAAGAAAACTGGACAAGCTCTAGTATTTGGACTCTATGAAGAACCTGTGACTCCAGGGCAGTGCAACATGGTTGTTGAGAGGTTGGGGGATTACCTCATTGACCAGGGCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003785 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005938 GO:0008064 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030832 GO:0030833 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032507 GO:0032535 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0034613 GO:0042989 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045185 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051179 GO:0051235 GO:0051493 GO:0051494 GO:0051641 GO:0051651 GO:0065007 GO:0065008 GO:0070727 GO:0071840 GO:0071944 GO:0090066 GO:0099568 GO:0110053 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

134

Amino Acids

14.23

Weight (kDa)

5.04

Isoelectric Point (pI)

25.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19770 AT4G29340
fragaria_vesca	FvH4_1g06470 FvH4_2g26231 FvH4_2g35200 FvH4_6g32550
malus_domestica	MD02G1068000.v1.1 MD08G1109600.v1.1 MD09G1201100.v1.1 MD09G1201400.v1.1 MD15G1089500.v1.1 MD15G1199600.v1.1
prunus_persica	Prupe.1G444100_v2.0.a1 Prupe.1G444100_v2.0.a1 Prupe.1G444100_v2.0.a1 Prupe.1G504400_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.7G217600_v2.0.a1 Prupe.7G217600_v2.0.a1
pyrus_communis	pycom02g05380 pycom09g11810 pycom15g08390 pycom15g17710
rosa_chinensis	RchiOBHm_Chr1g0361111 RchiOBHm_Chr2g0092221 RchiOBHm_Chr2g0140921 RchiOBHm_Chr6g0294811 RchiOBHm_Chr6g0306741
rosa_laevigata	RLG00000010769 RLG00000011838 RLG00000016287 RLG00000019902
rosa_multiflora	Rmu_co8510555.1_g000001 Rmu_sc0000524.1_g000025 Rmu_sc0001331.1_g000001 Rmu_sc0003848.1_g000011 Rmu_sc0017785.1_g000002 Rmu_sc0017786.1_g000002
rosa_roxburghii	Rroxscaffold_2G00104380 Rroxscaffold_2G00149360 Rroxscaffold_7G00161500 Rroxscaffold_7G00172990
rosa_rugosa	Rorug01G0285600 Rorug02G0023800 Rorug02G0365700 Rorug06G0247000 Rorug06G0352300
rosa_samantha	Rh2AG069500 Rh2AG069600 Rh2AG417100 Rh2BG069100 Rh2BG427000 Rh2CG070200 Rh2CG070300 Rh2CG403400 Rh6AG360600 Rh6AG464400 Rh6CG374300 Rh6CG478700 Rh6DG360800 Rh6DG465800
rosa_wichuraiana	Rw2G006260 Rw2G034130 Rw6G031460 Rw6G040470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	71
AciI	CCGC	2 cut(s)	69, 71
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	49
AfaI	GTAC	1 cut(s)	221
AfeI	AGCGCT	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	133
AjnI	CCWGG	4 cut(s)	231, 241, 340, 390
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	161
AlwNI	CAGNNNCTG	2 cut(s)	102, 397
Aor51HI	AGCGCT	1 cut(s)	115
AoxI	GGCC	4 cut(s)	49, 55, 105, 394
ApeKI	GCWGC	1 cut(s)	74
AspLEI	GCGC	3 cut(s)	116, 215, 248
AspS9I	GGNCC	2 cut(s)	105, 394
AsuC2I	CCSGG	2 cut(s)	177, 196
AsuII	TTCGAA	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	4 cut(s)	233, 243, 342, 392
BcnI	CCSGG	2 cut(s)	177, 196
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	398
BfoI	RGCGCY	2 cut(s)	117, 249
BisI	GCNGC	2 cut(s)	72, 75
BlsI	GCNGC	2 cut(s)	73, 76
Bme1390I	CCNGG	6 cut(s)	177, 196, 233, 243, 342, 392
BmgT120I	GGNCC	2 cut(s)	105, 394
BmrFI	CCNGG	6 cut(s)	177, 196, 233, 243, 342, 392
BmrI	ACTGGG	2 cut(s)	121, 159
BmsI	GCATC	1 cut(s)	70
BmuI	ACTGGG	2 cut(s)	121, 159
BpmI	CTGGAG	2 cut(s)	294, 324
Bpu14I	TTCGAA	1 cut(s)	168
BpuMI	CCSGG	2 cut(s)	177, 196
BsaAI	YACGTR	1 cut(s)	19
BsaI	GGTCTC	1 cut(s)	92
BsaJI	CCNNGG	7 cut(s)	52, 69, 205, 232, 256, 341, 391
Bse1I	ACTGG	3 cut(s)	127, 154, 301
BseBI	CCWGG	4 cut(s)	233, 243, 342, 392
BseDI	CCNNGG	7 cut(s)	52, 69, 205, 232, 256, 341, 391
BseGI	GGATG	2 cut(s)	28, 252
BseNI	ACTGG	3 cut(s)	127, 154, 301
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	4 cut(s)	51, 57, 107, 396
BsiSI	CCGG	2 cut(s)	176, 195
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	4 cut(s)	51, 57, 107, 396
Bso31I	GGTCTC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	2 cut(s)	69, 71
BspANI	GGCC	4 cut(s)	51, 57, 107, 396
BspFNI	CGCG	1 cut(s)	71
BspPI	GGATC	1 cut(s)	161
BspT104I	TTCGAA	1 cut(s)	168
BspTNI	GGTCTC	1 cut(s)	92
BsrI	ACTGG	3 cut(s)	127, 154, 301
BssECI	CCNNGG	7 cut(s)	52, 69, 205, 232, 256, 341, 391
BssMI	GATC	1 cut(s)	153
BssT1I	CCWWGG	2 cut(s)	52, 205
Bst2UI	CCWGG	4 cut(s)	233, 243, 342, 392
BstBAI	YACGTR	1 cut(s)	19
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	59
BstDSI	CCRYGG	2 cut(s)	69, 256
BstF5I	GGATG	2 cut(s)	28, 252
BstFNI	CGCG	1 cut(s)	71
BstH2I	RGCGCY	2 cut(s)	117, 249
BstHHI	GCGC	3 cut(s)	116, 215, 248
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	4 cut(s)	233, 243, 342, 392
BstSCI	CCNGG	6 cut(s)	175, 194, 231, 241, 340, 390
BstSFI	CTRYAG	1 cut(s)	398
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	61
BsuRI	GGCC	4 cut(s)	51, 57, 107, 396
BtgI	CCRYGG	2 cut(s)	69, 256
BtsCI	GGATG	2 cut(s)	28, 252
BtsI	GCAGTG	2 cut(s)	103, 353
BtsIMutI	CAGTG	2 cut(s)	103, 353
Cac8I	GCNNGC	1 cut(s)	59
CaiI	CAGNNNCTG	2 cut(s)	102, 397
CfoI	GCGC	3 cut(s)	116, 215, 248
Cfr13I	GGNCC	2 cut(s)	105, 394
Cfr42I	CCGCGG	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	2 cut(s)	223, 355
CviJI	RGCY	9 cut(s)	51, 57, 74, 107, 136, 241, 270, 305, 396
CviKI_1	RGCY	9 cut(s)	51, 57, 74, 107, 136, 241, 270, 305, 396
CviQI	GTAC	1 cut(s)	220
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
EaeI	YGGCCR	1 cut(s)	49
Eco130I	CCWWGG	2 cut(s)	52, 205
Eco24I	GRGCYC	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	92
Eco47III	AGCGCT	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	394
EcoRII	CCWGG	4 cut(s)	231, 241, 340, 390
EcoT14I	CCWWGG	2 cut(s)	52, 205
EcoT38I	GRGCYC	1 cut(s)	272
ErhI	CCWWGG	2 cut(s)	52, 205
FaeI	CATG	2 cut(s)	226, 358
FaiI	YATR	4 cut(s)	224, 287, 324, 356
FatI	CATG	2 cut(s)	222, 354
Fnu4HI	GCNGC	2 cut(s)	72, 75
FokI	GGATG	2 cut(s)	35, 239
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	72, 75
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	3 cut(s)	115, 214, 247
GluI	GCNGC	2 cut(s)	72, 75
GsuI	CTGGAG	2 cut(s)	294, 324
HaeII	RGCGCY	2 cut(s)	117, 249
HaeIII	GGCC	4 cut(s)	51, 57, 107, 396
HapII	CCGG	2 cut(s)	176, 195
HhaI	GCGC	3 cut(s)	116, 215, 248
Hin1II	CATG	2 cut(s)	226, 358
Hin6I	GCGC	3 cut(s)	114, 213, 246
HinP1I	GCGC	3 cut(s)	114, 213, 246
HinfI	GANTC	2 cut(s)	318, 337
HpaII	CCGG	2 cut(s)	176, 195
Hpy188III	TCNNGA	2 cut(s)	89, 273
HpyAV	CCTTC	2 cut(s)	130, 259
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	202, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	226, 358
HspAI	GCGC	3 cut(s)	114, 213, 246
KspI	CCGCGG	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	38, 334
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	2 cut(s)	182, 338
MhlI	GDGCHC	1 cut(s)	272
MlyI	GAGTC	2 cut(s)	312, 331
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	4 cut(s)	133, 269, 360, 392
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	176, 195
MspR9I	CCNGG	6 cut(s)	177, 196, 233, 243, 342, 392
MvaI	CCWGG	4 cut(s)	233, 243, 342, 392
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	2 cut(s)	177, 196
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	2 cut(s)	226, 358
NmuCI	GTSAC	2 cut(s)	38, 334
NspV	TTCGAA	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	73, 76
PleI	GAGTC	2 cut(s)	312, 331
PpsI	GAGTC	2 cut(s)	312, 331
Ppu21I	YACGTR	1 cut(s)	19
Psp6I	CCWGG	4 cut(s)	231, 241, 340, 390
PspGI	CCWGG	4 cut(s)	231, 241, 340, 390
PspPI	GGNCC	2 cut(s)	105, 394
PstNI	CAGNNNCTG	2 cut(s)	102, 397
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SacII	CCGCGG	1 cut(s)	72
SatI	GCNGC	2 cut(s)	72, 75
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	2 cut(s)	105, 394
SchI	GAGTC	2 cut(s)	312, 331
ScrFI	CCNGG	6 cut(s)	177, 196, 233, 243, 342, 392
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	8 cut(s)	17, 21, 207, 280, 307, 334, 371, 384
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	398
Sfr303I	CCGCGG	1 cut(s)	72
SfuI	TTCGAA	1 cut(s)	168
SgrBI	CCGCGG	1 cut(s)	72
SsiI	CCGC	2 cut(s)	69, 71
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	6 cut(s)	175, 194, 231, 241, 340, 390
StyI	CCWWGG	2 cut(s)	52, 205
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	90, 168
TaqII	GACCGA	1 cut(s)	74
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	74
TscAI	CASTG	2 cut(s)	103, 353
TseFI	GTSAC	2 cut(s)	38, 334
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	2 cut(s)	38, 334
TspDTI	ATGAA	1 cut(s)	339
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	2 cut(s)	103, 353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.