Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000848

Physical Location & Seq

Genomic Coordinates Reverse (-)

25605812 .. 25608398

Gene Structure 2587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCGTGGCAGGCTTACGTCGACGATCACTTGCTGTGCGACATCGACGGCAACCATCTCGCCTCCGCTGCCATCGTCGGACACGACGGCAGCGTCTGGGCTCAGAGCTCTAACTTCCCCAAGTTTAAGCCCGAGGAAATTACGGCGATCATGAAAGATTTCGATGAGCCCGGGACTCTTGCACCGACTGGTCTGCACCTTGCTGGCACAAAGTACATGGTTATTCAAGGCGAGGGTGGAGCTGTTATTCGTGGCAAGAAGGGCTCCGGAGGTGTTACTGTGAAGAAAACTGGCCAAGCTTTGGTTTTTGGTATATATGAGGAGCCTTTGACACCAGGACAGTGTAATATGATTGTGGAGAGGTTGGGAGATTACCTGATTGATCAGGGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04013 ko04015 ko04810 ko05131 ko05132 map04013 map04015 map04810 map05131 map05132

Pfam Domains

Protein Families

Profilin

Protein Analysis

132

Amino Acids

14.01

Weight (kDa)

5.02

Isoelectric Point (pI)

22.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Profilin	PF00235	1 - 131	4.6e-45	Profilin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19770 AT4G29340
fragaria_vesca	FvH4_1g06470 FvH4_2g26231 FvH4_2g35200 FvH4_6g32550
malus_domestica	MD02G1068000.v1.1 MD08G1109600.v1.1 MD09G1201100.v1.1 MD09G1201400.v1.1 MD15G1089500.v1.1 MD15G1199600.v1.1
prunus_persica	Prupe.1G444100_v2.0.a1 Prupe.1G444100_v2.0.a1 Prupe.1G444100_v2.0.a1 Prupe.1G504400_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.3G057200_v2.0.a1 Prupe.7G217600_v2.0.a1 Prupe.7G217600_v2.0.a1
pyrus_communis	pycom02g05380 pycom09g11810 pycom15g08390 pycom15g17710
rosa_chinensis	RchiOBHm_Chr1g0361111 RchiOBHm_Chr2g0092221 RchiOBHm_Chr2g0140921 RchiOBHm_Chr6g0294811 RchiOBHm_Chr6g0306741
rosa_laevigata	RLG00000010769 RLG00000011838 RLG00000016287 RLG00000019902
rosa_multiflora	Rmu_co8510555.1_g000001 Rmu_sc0000524.1_g000025 Rmu_sc0001331.1_g000001 Rmu_sc0003848.1_g000011 Rmu_sc0017785.1_g000002 Rmu_sc0017786.1_g000002
rosa_roxburghii	Rroxscaffold_2G00104380 Rroxscaffold_2G00149360 Rroxscaffold_7G00161500 Rroxscaffold_7G00172990
rosa_rugosa	Rorug01G0285600 Rorug02G0023800 Rorug02G0365700 Rorug06G0247000 Rorug06G0352300
rosa_samantha	Rh2AG069500 Rh2AG069600 Rh2AG417100 Rh2BG069100 Rh2BG427000 Rh2CG070200 Rh2CG070300 Rh2CG403400 Rh6AG360600 Rh6AG464400 Rh6CG374300 Rh6CG478700 Rh6DG360800 Rh6DG465800
rosa_wichuraiana	Rw2G006260 Rw2G034130 Rw6G031460 Rw6G040470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	266
AciI	CCGC	1 cut(s)	66
AcoI	YGGCCR	1 cut(s)	292
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	3 cut(s)	108, 242, 299
AluI	AGCT	3 cut(s)	108, 242, 299
Alw21I	GWGCWC	1 cut(s)	110
AlwNI	CAGNNNCTG	2 cut(s)	96, 391
Ama87I	CYCGRG	2 cut(s)	131, 170
Aor13HI	TCCGGA	1 cut(s)	266
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	68, 90
Asp700I	GAANNNNTTC	1 cut(s)	158
AsuC2I	CCSGG	2 cut(s)	171, 172
AvaI	CYCGRG	2 cut(s)	131, 170
BalI	TGGCCA	1 cut(s)	294
BanII	GRGCYC	4 cut(s)	103, 110, 171, 266
Bbv12I	GWGCWC	1 cut(s)	110
BbvI	GCAGC	2 cut(s)	55, 102
BccI	CCATC	2 cut(s)	63, 80
BceAI	ACGGC	3 cut(s)	64, 103, 159
BcgI	CGANNNNNNTGC	4 cut(s)	40, 74, 175, 209
BciT130I	CCWGG	1 cut(s)	336
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	2 cut(s)	171, 172
BfmI	CTRYAG	1 cut(s)	392
BisI	GCNGC	2 cut(s)	69, 91
BlsI	GCNGC	2 cut(s)	70, 92
Bme1390I	CCNGG	3 cut(s)	171, 172, 336
BmeT110I	CYCGRG	2 cut(s)	131, 170
BmiI	GGNNCC	2 cut(s)	265, 324
BmrFI	CCNGG	3 cut(s)	171, 172, 336
BpuMI	CCSGG	2 cut(s)	171, 172
BsaJI	CCNNGG	2 cut(s)	132, 170
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	193, 295
BseAI	TCCGGA	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	132, 170
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	2 cut(s)	193, 295
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	55, 102
BsgI	GTGCAG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	110
BsiHKCI	CYCGRG	2 cut(s)	131, 170
BsiSI	CCGG	2 cut(s)	171, 267
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	294
BsoBI	CYCGRG	2 cut(s)	131, 170
Bsp1286I	GDGCHC	4 cut(s)	103, 110, 171, 266
Bsp13I	TCCGGA	1 cut(s)	266
Bsp143I	GATC	3 cut(s)	25, 147, 382
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	115
BspEI	TCCGGA	1 cut(s)	266
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	265, 324
BsrI	ACTGG	2 cut(s)	193, 295
BssECI	CCNNGG	2 cut(s)	132, 170
BssMI	GATC	3 cut(s)	25, 147, 382
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	2 cut(s)	280, 342
BstC8I	GCNNGC	2 cut(s)	12, 205
BstDEI	CTNAG	1 cut(s)	102
BstKTI	GATC	3 cut(s)	28, 150, 385
BstMBI	GATC	3 cut(s)	25, 147, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 261
BstNI	CCWGG	1 cut(s)	336
BstSCI	CCNGG	3 cut(s)	169, 170, 334
BstSFI	CTRYAG	1 cut(s)	392
BstV1I	GCAGC	2 cut(s)	55, 102
BsuRI	GGCC	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	347
Cac8I	GCNNGC	2 cut(s)	12, 205
CaiI	CAGNNNCTG	2 cut(s)	96, 391
CciI	TCATGA	1 cut(s)	150
Cfr9I	CCCGGG	1 cut(s)	170
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	151, 217
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	3 cut(s)	27, 149, 384
DpnII	GATC	3 cut(s)	25, 147, 382
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	292
Ecl136II	GAGCTC	1 cut(s)	108
Eco24I	GRGCYC	4 cut(s)	103, 110, 171, 266
Eco53kI	GAGCTC	1 cut(s)	108
Eco88I	CYCGRG	2 cut(s)	131, 170
EcoICRI	GAGCTC	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	334
EcoT38I	GRGCYC	4 cut(s)	103, 110, 171, 266
FaeI	CATG	2 cut(s)	154, 220
FaiI	YATR	6 cut(s)	152, 218, 314, 316, 318, 350
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	2 cut(s)	150, 216
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	69, 91
FriOI	GRGCYC	4 cut(s)	103, 110, 171, 266
Fsp4HI	GCNGC	2 cut(s)	69, 91
GluI	GCNGC	2 cut(s)	69, 91
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	2 cut(s)	171, 267
HgaI	GACGC	1 cut(s)	82
Hin1II	CATG	2 cut(s)	154, 220
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	1 cut(s)	175
HpaII	CCGG	2 cut(s)	171, 267
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	80, 105
Hpy188III	TCNNGA	2 cut(s)	151, 267
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	5 cut(s)	23, 26, 50, 80, 89
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	2 cut(s)	280, 342
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	182, 196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 261
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	154, 220
Kpn2I	TCCGGA	1 cut(s)	266
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	25, 147, 382
LmnI	GCTCC	3 cut(s)	239, 269, 322
Lsp1109I	GCAGC	2 cut(s)	55, 102
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	3 cut(s)	27, 149, 384
MboI	GATC	3 cut(s)	25, 147, 382
MboII	GAAGA	1 cut(s)	295
MhlI	GDGCHC	4 cut(s)	103, 110, 171, 266
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	1 cut(s)	138
MluNI	TGGCCA	1 cut(s)	294
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	6 cut(s)	73, 127, 226, 263, 313, 354
Mox20I	TGGCCA	1 cut(s)	294
MroI	TCCGGA	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	1 cut(s)	126
Msp20I	TGGCCA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	171, 267
MspR9I	CCNGG	3 cut(s)	171, 172, 336
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	2 cut(s)	68, 261
NciI	CCSGG	2 cut(s)	171, 172
NdeII	GATC	3 cut(s)	25, 147, 382
NlaIII	CATG	2 cut(s)	154, 220
NlaIV	GGNNCC	2 cut(s)	265, 324
PagI	TCATGA	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 90
PdmI	GAANNNNTTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	70, 92
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
Psp124BI	GAGCTC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	2 cut(s)	265, 324
PstNI	CAGNNNCTG	2 cut(s)	96, 391
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SacI	GAGCTC	1 cut(s)	110
SalI	GTCGAC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	2 cut(s)	69, 91
Sau3AI	GATC	3 cut(s)	25, 147, 382
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	3 cut(s)	171, 172, 336
SduI	GDGCHC	4 cut(s)	103, 110, 171, 266
SetI	ASST	8 cut(s)	21, 110, 201, 244, 274, 301, 365, 378
SfcI	CTRYAG	1 cut(s)	392
SgrDI	CGTCGACG	1 cut(s)	20
SmaI	CCCGGG	1 cut(s)	172
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	110
StyD4I	CCNGG	3 cut(s)	169, 170, 334
TaaI	ACNGT	2 cut(s)	280, 342
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	3 cut(s)	21, 45, 162
TasI	AATT	1 cut(s)	138
TatI	WGTACW	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	347
TseI	GCWGC	2 cut(s)	68, 90
TspDTI	ATGAA	1 cut(s)	167
TspMI	CCCGGG	1 cut(s)	170
TspRI	CASTG	1 cut(s)	347
Van91I	CCANNNNNTGG	1 cut(s)	301
XmaI	CCCGGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.